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Full-Text Articles in Physical Sciences and Mathematics

Identifying Genes Influencing The Efficiency Of Photosynthesis, Jason M. Rivera, Steven Burgess Apr 2023

Identifying Genes Influencing The Efficiency Of Photosynthesis, Jason M. Rivera, Steven Burgess

PRECS student projects

  • Photosynthesis adapts to environmental conditions over time.¹

  • Varying environmental conditions lead to stress accumulation on the plant.²

  • A genetic library has been assembled for forward genetic screening of Arabidopsis thaliana.³

  • Arabidopsis Thaliana is a model plant used as a model organism in growth experiments.

  • This research project aims to identify and analyze candidate genes that impact the efficiency of photosynthesis.

  • These genes can be transplanted into commercial crops to increase efficiency of photosynthesis and crop yields.


Photorespiration In Eelgrass (Zostera Marina L.): A Photoprotection Mechanism For Survival In A Co₂-Limited World, Billur Celebi-Ergin, Richard C. Zimmerman, Victoria J. Hill Jan 2022

Photorespiration In Eelgrass (Zostera Marina L.): A Photoprotection Mechanism For Survival In A Co₂-Limited World, Billur Celebi-Ergin, Richard C. Zimmerman, Victoria J. Hill

OES Faculty Publications

Photorespiration, commonly viewed as a loss in photosynthetic productivity of C3 plants, is expected to decline with increasing atmospheric CO2, even though photorespiration plays an important role in the oxidative stress responses. This study aimed to quantify the role of photorespiration and alternative photoprotection mechanisms in Zostera marina L. (eelgrass), a carbon-limited marine C3 plant, in response to ocean acidification. Plants were grown in controlled outdoor aquaria at different [CO2]aq ranging from ~55 (ambient) to ~2121 μM for 13 months and compared for differences in leaf photochemistry by simultaneous measurements of O2 flux and …


High-Resolution Cryo-Electron Microscopy Structure Of Photosystem Ii From The Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, Christopher J. Gisriel, Jimin Wang, Jinchan Liu, David A. Flesher, Krystle M. Reiss, Hao-Li Huang, Ke R. Yang, William H. Armstrong, M. R. Gunner, Victor S. Batista, Richard J. Debus, Gary W. Brudvig Dec 2021

High-Resolution Cryo-Electron Microscopy Structure Of Photosystem Ii From The Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, Christopher J. Gisriel, Jimin Wang, Jinchan Liu, David A. Flesher, Krystle M. Reiss, Hao-Li Huang, Ke R. Yang, William H. Armstrong, M. R. Gunner, Victor S. Batista, Richard J. Debus, Gary W. Brudvig

Publications and Research

Photosystem II (PSII) enables global-scale, light-driven water oxidation. Genetic manipulation of PSII from the mesophilic cyanobacterium Synechocystis sp. PCC 6803 has provided insights into the mechanism of water oxidation; however, the lack of a highresolution structure of oxygen-evolving PSII from this organism has limited the interpretation of biophysical data to models based on structures of thermophilic cyanobacterial PSII. Here, we report the cryo-electron microscopy structure of PSII from Synechocystis sp. PCC 6803 at 1.93-Å resolution. A number of differences are observed relative to thermophilic PSII structures, including the following: the extrinsic subunit PsbQ is maintained, the C terminus of the …


How Wetland Plants Deal With Stress, Taylor M. Sloey Jan 2021

How Wetland Plants Deal With Stress, Taylor M. Sloey

Biological Sciences Faculty Publications

We all get stressed. To deal with that stress, some of us may exercise, take a bubble bath, cry, or simply leave the stressful situation. But how can you cope with stress if you are rooted in place? Plants that live in estuaries are exposed to many types of stresses from the environment, including flooding, high salt levels, low soil oxygen, and waves. Fortunately, wetland plants have developed ways to survive within these conditions, from excreting salt, to growing faster, to even breaking down cell walls to maximize air flow. Plants can tolerate different levels of stress depending on their …


Does The Short Term Fluctuation Of Mineral Element Concentrations In The Closed Hydroponic Experimental Facilities Affect The Mineral Concentrations In Cucumber Plants Exposed To Elevated Co2?, Xun Li, Jinlong Dong, Nazim Gruda, Wenying Chu, Zengqiang Duan Jan 2021

Does The Short Term Fluctuation Of Mineral Element Concentrations In The Closed Hydroponic Experimental Facilities Affect The Mineral Concentrations In Cucumber Plants Exposed To Elevated Co2?, Xun Li, Jinlong Dong, Nazim Gruda, Wenying Chu, Zengqiang Duan

Chemistry & Biochemistry Faculty Publications

Aims

Studies dealing with plants’ mineral nutrient status under elevated atmospheric CO2concentration (eCO2) are usually conducted in closed hydroponic systems, in which nutrient solutions are entirely renewed every several days. Here, we investigated the contribution of the fluctuation of concentrations of N ([N]), P ([P]), and K ([K]) in nutrient solutions in this short period on their concentrations in cucumber plants exposed to different [CO2] and N levels.

Methods

Cucumber (Cucumis sativus L.) plants were hydroponically grown under two [CO2] and three N levels. [N], [P], and [K] in nutrient solutions …


Interactive Effects Of The Co2 Enrichment And Nitrogen Supply On The Biomass Accumulation, Gas Exchange Properties, And Mineral Elements Concentrations In Cucumber Plants At Different Growth Stages, Xun Li, Jinlong Dong, Nazim S. Gruda, Wenying Chu, Zengqiang Duan Jan 2020

Interactive Effects Of The Co2 Enrichment And Nitrogen Supply On The Biomass Accumulation, Gas Exchange Properties, And Mineral Elements Concentrations In Cucumber Plants At Different Growth Stages, Xun Li, Jinlong Dong, Nazim S. Gruda, Wenying Chu, Zengqiang Duan

Chemistry & Biochemistry Faculty Publications

The concentration changes of mineral elements in plants at different CO2 concentrations ([CO2]) and nitrogen (N) supplies and the mechanisms which control such changes are not clear. Hydroponic trials on cucumber plants with three [CO2] (400, 625, and 1200 µmol mol−1) and five N supply levels (2, 4, 7, 14, and 21 mmol L−1) were conducted. When plants were in high N supply, the increase in total biomass by elevated [CO2] was 51.7% and 70.1% at the seedling and initial fruiting stages, respectively. An increase in net photosynthetic rate …


Effects Of Rate Of Drying, Life History Phase, And Ecotype On The Ability Of The Moss Bryum Argenteum To Survive Desiccation Events And The Influence On Conservation And Selection Of Material For Restoration, Joshua Lee Greenwood, Lloyd R. Stark, Lindsay P. Chiquoine Oct 2019

Effects Of Rate Of Drying, Life History Phase, And Ecotype On The Ability Of The Moss Bryum Argenteum To Survive Desiccation Events And The Influence On Conservation And Selection Of Material For Restoration, Joshua Lee Greenwood, Lloyd R. Stark, Lindsay P. Chiquoine

Life Sciences Faculty Research

Desiccation stress is frequently experienced by the moss Bryum argenteum and can influence survival, propagation and niche selection. We attempted to disentangle the interacting factors of life history phase (five categories) and rate of desiccation (time allotted for induction of desiccation tolerance) for 13 ecotypes of B. argenteum. Using chlorophyll fluorescence as a stress index, we determined how these parameters influenced desiccation tolerance. Rate of drying and life phase significantly affected desiccation tolerance. The reaction norms of desiccation tolerance displayed by the 13 ecotypes showed a substantial degree of variation in phenotypic plasticity. We observed differences in survival and fluorescence …


Relative Salt Tolerance Of Seven Japanese Spirea Cultivars, Yuxiang Wang, Liqin Li, Youping Sun, Xin Dai Apr 2019

Relative Salt Tolerance Of Seven Japanese Spirea Cultivars, Yuxiang Wang, Liqin Li, Youping Sun, Xin Dai

Plants, Soils, and Climate Faculty Publications

Spirea (Spiraea sp.) plants are commonly used in landscapes in Utah and the intermountain western United States. The relative salt tolerance of seven japanese spirea (Spiraea japonica) cultivars (Galen, Minspi, NCSX1, NCSX2, SMNSJMFP, Tracy, and Yan) were evaluated in a greenhouse. Plants were irrigated with a nutrient solution with an electrical conductivity (EC) of 1.2 dSmL1 (control) or saline solutions with an EC of 3.0 or 6.0 dSmL1 once per week for 8 weeks. At 8 weeks after the initiation of treatment, all japanese spirea cultivars irrigated with saline solution with an EC of 3.0 dSmL1 still exhibited good or …


Ebullition Of Oxygen From Seagrasses Under Supersaturated Conditions, Matthew H. Long, Kevin Sutherland, Scott D. Wankel, David J. Burdige, Richard C. Zimmerman Jan 2019

Ebullition Of Oxygen From Seagrasses Under Supersaturated Conditions, Matthew H. Long, Kevin Sutherland, Scott D. Wankel, David J. Burdige, Richard C. Zimmerman

OES Faculty Publications

Gas ebullition from aquatic systems to the atmosphere represents a potentially important fraction of primary production that goes unquantified by measurements of dissolved gas concentrations. Although gas ebullition from photosynthetic surfaces has often been observed, it is rarely quantified. The resulting underestimation of photosynthetic activity may significantly bias the determination of ecosystem trophic status and estimated rates of biogeochemical cycling from in situ measures of dissolved oxygen. Here, we quantified gas ebullition rates in Zostera marina meadows in Virginia, U.S.A. using simple funnel traps and analyzed the oxygen concentration and isotopic composition of the captured gas. Maximum hourly rates of …


Single-Cell Growth Rates In Photoautotrophic Populations Measured By Stable Isotope Probing And Resonance Raman Microspectrometry, Gordon T. Taylor, Elizabeth A. Suter, Zhuo Q. Li, Stephanie Chow, Dallyce Stinton, Tatiana Zaliznyak, Steven R. Beaupre Aug 2017

Single-Cell Growth Rates In Photoautotrophic Populations Measured By Stable Isotope Probing And Resonance Raman Microspectrometry, Gordon T. Taylor, Elizabeth A. Suter, Zhuo Q. Li, Stephanie Chow, Dallyce Stinton, Tatiana Zaliznyak, Steven R. Beaupre

Faculty Works: Biology, Chemistry, and Environmental Studies

A newmethod tomeasure growth rates of individual photoautotrophic cells by combining stable isotope probing (SIP) and single-cell resonance Raman microspectrometry is introduced. This report explores optimal experimental design and the theoretical underpinnings for quantitative responses of Raman spectra to cellular isotopic composition. Resonance Raman spectra of isogenic cultures of the cyanobacterium, Synechococcus sp., grown in 13C-bicarbonate revealed linear covariance between wavenumber (cm−1) shifts in dominant carotenoid Raman peaks and a broad range of cellular 13C fractional isotopic abundance. Single-cell growth rates were calculated from spectra-derived isotopic content and empirical relationships. Growth rates among any 25 cells in a sample varied …


Experimental Impacts Of Climate Warming And Ocean Carbonation On Eelgrass Zostera Marina, Richard C. Zimmerman, Victoria J. Hill, Malee Jinuntuya, Billur Celebi, David Ruble, Miranda Smith, Tiffany Cedeno, W. Mark Swingle Feb 2017

Experimental Impacts Of Climate Warming And Ocean Carbonation On Eelgrass Zostera Marina, Richard C. Zimmerman, Victoria J. Hill, Malee Jinuntuya, Billur Celebi, David Ruble, Miranda Smith, Tiffany Cedeno, W. Mark Swingle

OES Faculty Publications

CO2 is a critical and potentially limiting substrate for photosynthesis of both terrestrial and aquatic ecosystems. In addition to being a climate-warming greenhouse gas, increasing concentrations of CO2 will dissolve in the oceans, eliciting both negative and positive responses among organisms in a process commonly known as ocean acidification. The dissolution of CO2 into ocean surface waters, however, also increases its availability for photosynthesis, to which the highly successful, and ecologically important, seagrasses respond positively. Thus, the process might be more accurately characterized as ocean carbonation. This experiment demonstrated that CO2 stimulation of primary production enhances …


Evolutionary Responses Of Invasive Grass Species To Variation In Precipitation And Soil Nitrogen, Monica A. Nguyen, Amy E. Ortega, Quoc L. Nguyen, Sarah Kimball, Michael L. Goulden, Jennifer L. Funk Apr 2016

Evolutionary Responses Of Invasive Grass Species To Variation In Precipitation And Soil Nitrogen, Monica A. Nguyen, Amy E. Ortega, Quoc L. Nguyen, Sarah Kimball, Michael L. Goulden, Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

1.Global climate models suggest that many ecosystems will experience reduced precipitation over the next century and the consequences for invasive plant performance are largely unknown. Annual invasive species may be able to quickly evolve traits associated with drought escape or tolerance through rapid genetic changes.

2.We investigated the influence of five years of water and nitrogen manipulations on trait values in a southern California grassland system. Seeds from two annual grass species (Avena barbata, Bromus madritensis) were collected from experimental plots and grown in a common environment over two generations. We measured 14 physiological, morphological, phenological, and …


Skeletal Light-Scattering Accelerates Bleaching Response In Reef-Building Corals, Timothy D. Swain, Emily Dubois, Andrew Gomes, Valentina P. Stoyneva, Andrew J. Radosevich, Jillian Henss, Michelle E. Wagner, Justin Derbas, Hannah Grooms, Elizabeth M. Velazquez, Joshua Traub, Brian J. Kennedy, Arabela A. Grigorescu, Mark W. Westneat, Kevin Sanborn, Shoshana Levine, Mark Schick, George Parsons, Brendan C. Briggs, Jeremy D. Rogers, Vadim Backman, Luisa A. Marcelino Mar 2016

Skeletal Light-Scattering Accelerates Bleaching Response In Reef-Building Corals, Timothy D. Swain, Emily Dubois, Andrew Gomes, Valentina P. Stoyneva, Andrew J. Radosevich, Jillian Henss, Michelle E. Wagner, Justin Derbas, Hannah Grooms, Elizabeth M. Velazquez, Joshua Traub, Brian J. Kennedy, Arabela A. Grigorescu, Mark W. Westneat, Kevin Sanborn, Shoshana Levine, Mark Schick, George Parsons, Brendan C. Briggs, Jeremy D. Rogers, Vadim Backman, Luisa A. Marcelino

Marine & Environmental Sciences Faculty Articles

Background At the forefront of ecosystems adversely affected by climate change, coral reefs are sensitive to anomalously high temperatures which disassociate (bleaching) photosynthetic symbionts (Symbiodinium) from coral hosts and cause increasingly frequent and severe mass mortality events. Susceptibility to bleaching and mortality is variable among corals, and is determined by unknown proportions of environmental history and the synergy of Symbiodinium- and coral-specific properties. Symbiodinium live within host tissues overlaying the coral skeleton, which increases light availability through multiple light-scattering, forming one of the most efficient biological collectors of solar radiation. Light-transport in the upper ~200 μm layer …


Effects Of Elevated Pco2 And Irradiance On Growth, Photosynthesis And Calcification In Halimeda Discoidea, K. E. Peach, M. S. Koch, Patricia Blackwelder Feb 2016

Effects Of Elevated Pco2 And Irradiance On Growth, Photosynthesis And Calcification In Halimeda Discoidea, K. E. Peach, M. S. Koch, Patricia Blackwelder

Marine & Environmental Sciences Faculty Articles

Ocean acidification (OA) effects on photophysiology and calcification were examined in Halimeda discoidea, a calcifying macroalga that produces tropical reef sediments. Photosynthetic parameters, including maximum photosynthetic rate (Pmax), photosynthetic efficiency (α) and compensating irradiance (Ic) were determined in short-term assays on live thalli after a 10 d exposure to 4 levels of CO2 partial pressures (pCO2; 491, 653, 982 and 1201 µatm) under saturating (300 µmol photons m-2 s-1) and sub-saturating (90 µmol photons m-2 s-1) irradiance in an aquaria study. Morphology …


Divergent Responses Of Atlantic Coastal And Oceanic Synechococcus To Iron Limitation, Katherine R. M. Mackey, Anton F. Post, Matthew R. Mcilvin, Gregory A. Cutter, Seth G. John, Mak A. Saito Jan 2015

Divergent Responses Of Atlantic Coastal And Oceanic Synechococcus To Iron Limitation, Katherine R. M. Mackey, Anton F. Post, Matthew R. Mcilvin, Gregory A. Cutter, Seth G. John, Mak A. Saito

OES Faculty Publications

Marine Synechococcus are some of the most diverse and ubiquitous phytoplankton, and iron (Fe) is an essential micronutrient that limits productivity in many parts of the ocean. To investigate how coastal and oceanic Atlantic Synechococcus strains acclimate to Fe availability, we compared the growth, photophysiology, and quantitative proteomics of two Synechococcus strains from different Fe regimes. Synechococcus strain WH8102, from a region in the southern Sargasso Sea that receives substantial dust deposition, showed impaired growth and photophysiology as Fe declined, yet used few acclimation responses. Coastal WH8020, from the dynamic, seasonally variable New England shelf, displayed a multitiered, hierarchical cascade …


Understanding Ocean Acidification Impacts On Organismal To Ecological Scales, Andreas J. Andersson, David I. Kline, Peter J. Edmunds, Stephen D. Archer, Nina Bednarsek, Robert C. Carpenter, Meg Chadsey, Philip Goldstein, Andrea G. Grottoli, Thomas P. Hurst, Andrew L. King, Janet E. Kübler, Ilsa B. Kuffner, Katherine R.M. Mackey, Bruce A. Menge, Adina Paytan, Ulf Riebesell, Astrid Schnetzer, Mark E. Warner, Richard C. Zimmerman Jan 2015

Understanding Ocean Acidification Impacts On Organismal To Ecological Scales, Andreas J. Andersson, David I. Kline, Peter J. Edmunds, Stephen D. Archer, Nina Bednarsek, Robert C. Carpenter, Meg Chadsey, Philip Goldstein, Andrea G. Grottoli, Thomas P. Hurst, Andrew L. King, Janet E. Kübler, Ilsa B. Kuffner, Katherine R.M. Mackey, Bruce A. Menge, Adina Paytan, Ulf Riebesell, Astrid Schnetzer, Mark E. Warner, Richard C. Zimmerman

OES Faculty Publications

Ocean acidification (OA) research seeks to understand how marine ecosystems and global elemental cycles will respond to changes in seawater carbonate chemistry in combination with other environmental perturbations such as warming, eutrophication, and deoxygenation. Here, we discuss the effectiveness and limitations of current research approaches used to address this goal. A diverse combination of approaches is essential to decipher the consequences of OA to marine organisms, communities, and ecosystems. Consequently, the benefits and limitations of each approach must be considered carefully. Major research challenges involve experimentally addressing the effects of OA in the context of large natural variability in seawater …


Predicting Carbon Isotope Discrimination In Eelgrass (Zostera Marina L.) From The Environmental Parameters- Light, Flow, And [Dic], Meredith L. Mcpherson, Richard C. Zimmerman, Victoria J. Hill Jan 2015

Predicting Carbon Isotope Discrimination In Eelgrass (Zostera Marina L.) From The Environmental Parameters- Light, Flow, And [Dic], Meredith L. Mcpherson, Richard C. Zimmerman, Victoria J. Hill

OES Faculty Publications

Isotopic discrimination against 13C during photosynthesis is determined by a combination of environmental conditions and physiological mechanisms that control delivery of CO2 to RUBISCO. This study investigated the effects of light, flow, dissolved inorganic carbon (DIC) concentration, and its speciation, on photosynthetic carbon assimilation of Zostera marinaL. (eelgrass) using a combination of laboratory experiments and theoretical calculations leading to a mechanistic understanding of environmental conditions that influence leaf carbon uptake and determine leaf stable carbon isotope signatures δ13C. Photosynthesis was saturated with respect to flow at low velocity ~ 3 cm s-1, but …


Spring Thaw Ionic Pulses Boost Nutrient Availability And Microbial Growth In Entombed Antarctic Dry Valley Cryoconite Holes, Jon Telling, Alexandre M. Anesio, Martyn Tranter, Andrew G. Fountain, Thomas H. Nylen, Jon Hawkings, Virendra B. Singh, Preeti Kaur, Michaela Musilova, Jemma L. Wadham Dec 2014

Spring Thaw Ionic Pulses Boost Nutrient Availability And Microbial Growth In Entombed Antarctic Dry Valley Cryoconite Holes, Jon Telling, Alexandre M. Anesio, Martyn Tranter, Andrew G. Fountain, Thomas H. Nylen, Jon Hawkings, Virendra B. Singh, Preeti Kaur, Michaela Musilova, Jemma L. Wadham

Geology Faculty Publications and Presentations

The seasonal melting of ice entombed cryoconite holes on McMurdo Dry Valley glaciers provides oases for life in the harsh environmental conditions of the polar desert where surface air temperatures only occasionally exceed 0°C during the Austral summer. Here we follow temporal changes in cryoconite hole biogeochemistry on Canada Glacier from fully frozen conditions through the initial stages of spring thaw toward fully melted holes. The cryoconite holes had a mean isolation age from the glacial drainage system of 3.4 years, with an increasing mass of aqueous nutrients (dissolved organic carbon, total nitrogen, total phosphorus) with longer isolation age. During …


Distributions Of Particulate Heme B In The Atlantic And Southern Oceans- Implications For Electron Transport In Phytoplankton, Martha Gledhill, Eric P. Achterberg, David J. Honey, Maria C. Nielsdottir, Micha J.A. Rijkenberg Jan 2013

Distributions Of Particulate Heme B In The Atlantic And Southern Oceans- Implications For Electron Transport In Phytoplankton, Martha Gledhill, Eric P. Achterberg, David J. Honey, Maria C. Nielsdottir, Micha J.A. Rijkenberg

OES Faculty Publications

Concentrations of heme b, the iron-containing component of b-type hemoproteins, ranged from b concentrations were enhanced in the photic zone and decreased with depth. Heme b concentrations correlated positively with chlorophyll a (chl a) in the TNA (r=0.41, pb did not correlate with chl a in the IB or SS. In the IB and SS, stations with high-chlorophyll and low-nutrient (Fe and/or Si) concentrations exhibited low heme bconcentrations relative to particulate organic carbon (< 0.1 μmolmol-1, and high chl a:heme b ratios (> 500). High chl a:heme b ratios resulted from relative decreases in …


Phosphorus Cycling In The Sargasso Sea: Investigation Using The Oxygen Isotopic Composition Of Phosphate, Enzyme-Labeled Fluorescence, And Turnover Times, Karen Mclaughlin, Jill A. Sohm, Gregory A. Cutter, Michael W. Lomas, Adina Paytan Jan 2013

Phosphorus Cycling In The Sargasso Sea: Investigation Using The Oxygen Isotopic Composition Of Phosphate, Enzyme-Labeled Fluorescence, And Turnover Times, Karen Mclaughlin, Jill A. Sohm, Gregory A. Cutter, Michael W. Lomas, Adina Paytan

OES Faculty Publications

Dissolved inorganic phosphorus (DIP) concentrations in surface water of vast areas of the ocean are extremely low (<10 nM) and phosphorus (P) availability could limit primary productivity in these regions. We explore the use of oxygen isotopic signature of dissolved phosphate (δ18OPO4) to investigate biogeochemical cycling of P in the Sargasso Sea, Atlantic Ocean. Additional techniques for studying P dynamics including 33P-based DIP turnover time estimates and percent of cells expressing alkaline phosphatase (AP) activity as measured by enzyme-labeling fluorescence are also used. In surface waters, δ18OPO4 values were lower than equilibrium by 3–6%, indicative of dissolved organic phosphorous (DOP) remineralization by extracellular enzymes. An isotope mass balance model using a variety of possible combinations of …


Δ13c Is A Signature Of Light Availability And Photosynthesis In Seagrass, Xingping Hu, David J. Burdige, Richard C. Zimmerman Jan 2012

Δ13c Is A Signature Of Light Availability And Photosynthesis In Seagrass, Xingping Hu, David J. Burdige, Richard C. Zimmerman

OES Faculty Publications

We explored the role of light-saturated (carbon-limited) photosynthesis on δ¹³C of turtlegrass (Thalassia testudinum Banks ex Konig) populations from the clear, blue waters of the Great Bahama Bank and the turbid, green waters of Florida Bay using field observations and radiative transfer models. Consistent with numerous previous observations, leaf δ¹³C decreased significantly with water depth in both regions. However the δ¹³C for Bahamas turtlegrass was 3 parts per thousand heavier than that for Florida Bay turtlegrass at equivalent depths, and broadband irradiance explained even less of the δ¹³C variations than depth. Instead, leaf δ¹³C showed a stronger relationship to …


Catalytic Solar Water Splitting Inspired By Photosynthesis. Homogeneous Catalysts With A Mechanical ("Machine-Like") Action, Gerhard F. Swiegers, G Charles Dismukes, Leone Spiccia, Robin Brimblecombe, Annette Koo, Jun Chen, Gordon G. Wallace Jan 2010

Catalytic Solar Water Splitting Inspired By Photosynthesis. Homogeneous Catalysts With A Mechanical ("Machine-Like") Action, Gerhard F. Swiegers, G Charles Dismukes, Leone Spiccia, Robin Brimblecombe, Annette Koo, Jun Chen, Gordon G. Wallace

Faculty of Science - Papers (Archive)

Chemical reactions may be controlled by either: the minimum threshold energy that must be overcome during collisions between reactant molecules / atoms (the Activation Energy, Ea), or: the rate at which reactant collisions occur (the Collision Frequency, A) (for reactions with low Ea). Reactions of type (2) are governed by the physical, mechanical interaction of the reactants. Such mechanical processes are unusual, but not unknown in molecular catalysts. We examine the catalytic action and macroscopic properties of several abiological mechanical catalysts and show that they display distinct similarities to enzymes in general. An abiological model of the Photosystem II Water …


Modeling The Vertical Distributions Of Downwelling Plane Irradiance And Diffuse Attenuation Coefficient In Optically Deep Waters, X. J. Pan, Richard C. Zimmerman Jan 2010

Modeling The Vertical Distributions Of Downwelling Plane Irradiance And Diffuse Attenuation Coefficient In Optically Deep Waters, X. J. Pan, Richard C. Zimmerman

OES Faculty Publications

The diffuse attenuation coefficient Kᵈ is critical to understand the vertical distribution of underwater downwelling irradiance (Eᵈ). Theoretically Eᵈ is composed of the direct solar beam and the diffuse sky irradiance. Applying the statistical results from Hydrolight radiative transfer simulations, Kᵈ is expressed into a mathematical equation (named as PZ06) integrated from the contribution of direct solar beam and diffuse sky irradiance with the knowledge of sky and water conditions. The percent root mean square errors (RMSE) for the vertical distribution of Eᵈ(z) under various sky and water conditions between PZ06 and Hydrolight results are typically less than 4%. Field …


Functional Transition In The Floral Receptacle Of The Sacred Lotus (Nelumbo Nucifera): From Thermogenesis To Photosynthesis, R. E. Miller, J. R. Watling, Sharon A. Robinson Jan 2009

Functional Transition In The Floral Receptacle Of The Sacred Lotus (Nelumbo Nucifera): From Thermogenesis To Photosynthesis, R. E. Miller, J. R. Watling, Sharon A. Robinson

Faculty of Science - Papers (Archive)

The receptacle of the sacred lotus is the main source of heat during the thermogenic stage of floral development. Following anthesis, it enlarges, greens and becomes a fully functional photosynthetic organ. We investigated development of photosynthetic traits during this unusual functional transition. There were two distinct phases of pigment accumulation in receptacles. Lutein and photoprotective xanthophyll cycle pigments accumulated first with 64% and 95% of the maximum, respectively, present prior to anthesis. Lutein epoxide comprised 32% of total carotenoids in yellow receptacles, but declined with development. By contrast, more than 85% of maximum total chlorophyll, β-carotene and Rubisco were produced …


Simulations Of Phytoplankton Species And Carbon Production In The Equatorial Pacific Ocean 1. Model Configuration And Ecosystem Dynamics, Baris Salihoglu, Eileen E. Hofmann Jan 2007

Simulations Of Phytoplankton Species And Carbon Production In The Equatorial Pacific Ocean 1. Model Configuration And Ecosystem Dynamics, Baris Salihoglu, Eileen E. Hofmann

OES Faculty Publications

The primary objective of this research is to investigate phytoplankton community response to variations in physical forcing and biological processes in the Cold Tongue region of the equatorial Pacific Ocean at 0N, 140W. This research objective was addressed using a one-dimensional multicomponent lower trophic level ecosystem model that includes detailed algal physiology, such as spectrally-dependent photosynthetic processes and iron limitation on algal growth. The ecosystem model is forced by a one-year (1992) time series of spectrally-dependent light, temperature, and water column mixing obtained from a Tropical Atmosphere-Ocean (TAO) Array mooring. Autotrophic growth is represented by five algal groups, which have …


Coupling Coherence Distinguishes Structure Sensitivity In Protein Electron Transfer, Tatiana Prytkova, Igor V. Kurnikov, David Beratan Jan 2007

Coupling Coherence Distinguishes Structure Sensitivity In Protein Electron Transfer, Tatiana Prytkova, Igor V. Kurnikov, David Beratan

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Quantum mechanical analysis of electron tunneling in nine thermally fluctuating cytochrome b562 derivatives reveals two distinct protein-mediated coupling limits. A structure-insensitive regime arises for redox partners coupled through dynamically averaged multiple-coupling pathways (in seven of the nine derivatives) where heme-edge coupling leads to the multiple-pathway regime. A structure-dependent limit governs redox partners coupled through a dominant pathway (in two of the nine derivatives) where axial-ligand coupling generates the single-pathway limit and slower rates. This two-regime paradigm provides a unified description of electron transfer rates in 26 ruthenium-modified heme and blue-copper proteins, as well as in numerous photosynthetic proteins.


Ecophysiology Of Two Native Invasive Woody Species And Two Dominant Warm-Season Grasses In The Semiarid Grasslands Of The Nebraska Sandhills, Kathleen D. Eggemeyer, Tala Awada, David A. Wedin, F. Edwin Harvey, Xinhua Zhou Sep 2006

Ecophysiology Of Two Native Invasive Woody Species And Two Dominant Warm-Season Grasses In The Semiarid Grasslands Of The Nebraska Sandhills, Kathleen D. Eggemeyer, Tala Awada, David A. Wedin, F. Edwin Harvey, Xinhua Zhou

School of Natural Resources: Faculty Publications

Populations of Pinus ponderosa and Juniperus virginiana are expanding into semiarid Sandhills grasslands in Nebraska. To evaluate the physiological basis of their success, we measured the seasonal course of leaf gas exchange, plant water status, and carbon isotope discrimination in these two native trees and two native C4 grasses (Schizachyrium scoparium and Panicum virgatum). Compared to the trees, grasses had higher net photosynthetic rates (Anet) and water use efficiency (WUE) and more negative predawn and midday water potentials (Ψ) in June and July. While leaf Ψ and rates of leaf gas exchange declined for all …


Dynamics Of Carbon Allocation In A Deep-Water Population Of The Deciduous Kelp Pleurophycus Gardeneri (Laminariales), Clare M. Dominik, Richard C. Zimmerman Jan 2006

Dynamics Of Carbon Allocation In A Deep-Water Population Of The Deciduous Kelp Pleurophycus Gardeneri (Laminariales), Clare M. Dominik, Richard C. Zimmerman

OES Faculty Publications

Pleurophycus gardneri (Laminariales) is common in the low intertidal of the Northeast Pacific, but dominates many deep (30 to 40 m) rocky reefs in central California. Seasonal dynamics of productivity and resource allocation of a deep-water population of this deciduous, stipitate kelp were studied to understand how blade abscission affects the annual carbon budget. Patterns of growth, metabolism, and carbon storage and mobilization were measured monthly for 1 yr relative to in situ light and temperature, and used to model the annual carbon budget. The resulting carbon budget was used to determine if blade abscission effectively reduced respiratory demand during …


Relationships Between Needle Nitrogen Concentration And Photosynthetic Responses Of Douglas-Fir Seedlings To Elevated Co2 And Temperature, James D. Lewis, Melissa S. Lucash, David M. Olszyk, David T. Tingey Jan 2004

Relationships Between Needle Nitrogen Concentration And Photosynthetic Responses Of Douglas-Fir Seedlings To Elevated Co2 And Temperature, James D. Lewis, Melissa S. Lucash, David M. Olszyk, David T. Tingey

Environmental Science and Management Faculty Publications and Presentations

  • Here we examined correlations between needle nitrogen concentration ([N]) and photosynthetic responses of Douglas-fir (Pseudotsuga menziesii) seedlings to growth in elevated temperatures and atmospheric carbon dioxide concentrations ([CO2]).
  • Seedlings were grown in sunlit, climate-controlled chambers at ambient or ambient+3.5° C and ambient or ambient +180 μmol mol-1 CO2 in a full factorial design. Photosynthetic parameters and needle [N] were measured six times over a 21-month period.
  • Needle [N] varied seasonally, and accounted for 30–50% of the variation in photosynthetic parameters. Across measurement periods, elevated temperature increased needle [N] by 26% and light-saturated …


Stomatal Responses Of Douglas-Fir Seedlings To Elevated Carbon Dioxide And Temperature During The Third And Fourth Years Of Exposure, James D. Lewis, Melissa S. Lucash, David M. Olszyk, David T. Tingey Jan 2002

Stomatal Responses Of Douglas-Fir Seedlings To Elevated Carbon Dioxide And Temperature During The Third And Fourth Years Of Exposure, James D. Lewis, Melissa S. Lucash, David M. Olszyk, David T. Tingey

Environmental Science and Management Faculty Publications and Presentations

Two major components of climate change, increasing atmospheric [CO2] and increasing temperature, may substantially alter the effects of water availability to plants through effects on the rate of water loss from leaves. We examined the interactive effects of elevated [CO2] and temperature on seasonal patterns of stomatal conductance (gs), transpiration (E) and instantaneous transpiration efficiency (ITE) in Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) seedlings. Seedlings were grown in sunlit chambers at either ambient CO2 (AC) or ambient + 180 µmol mol-1 CO2 (EC), and at ambient temperature (AT) or ambient + 3.5° …