Physical Sciences and Mathematics Commons^™

A Review Of Solar And Visible Light Active Tio2 Photocatalysis For Treating Bacteria, Cyanotoxins And Contaminants Of Emerging Concern, Rachel Fagan, Declan Mccormack, Suresh Pillai, Dionysios Dionysiou

Articles

Research into the development of solar and visible light active photocatalysts has been significantly increased in recent years due to its wide range of applications in treating contaminants of emerging concern (CECs), endocrine disrupting compounds (EDCs), bacteria and cyanotoxins. Solar photocatalysis is found to be highly effective in treating a wide range of CECs from sources such as pharmaceuticals, steroids, antibiotics, phthalates, disinfectants, pesticides, fragrances (musk), preservatives and additives. Similarly, a number of EDCs including polycyclic aromatic hydrocarbons (PAHs), alkylphenols (APs), bisphenol A (BPA), organotins (OTs), volatile organic compounds (VOCs), natural and synthetic estrogenic and androgenic chemicals, pesticides, and heavy …

The Minimum And Other Free Energies For Non-Linear Materials With Memory., John Murrough Golden

Articles

Expressions are obtained for free energies of materials with a certain type of non-linear constitutive relation. In particular, the minimum and related free energies are considered in some detail. Minimal states are defined for these materials, and it is shown that any free energy yielding a linear constitutive equation that is a functional of the minimal state has a counterpart in the non-linear case which is also a minimal state functional in this more general context. These results are explored for simple examples, including discrete spectrum materials.

Raman Spectroscopic Analysis Of Oral Squamous Cell Carcinoma And Oral Dysplasia In The High-Wavenumber Region, Hugh Byrne, Luis Felipe Carvalho, Fiona Lyng, Franck Bonnier

Articles

Raman spectroscopy can provide a molecular-level signature of the biochemical composition and structure of cells with excellent spatial resolution and could be useful to monitor changes in composition for early stage and non-invasive cancer diagnosis, both ex-vivo and in vivo. In particular, the fingerprint spectral region (400–1,800 cm^-1) has been shown to be very promising for optical biopsy purposes. However, limitations to discrimination of dysplastic and inflammatory processes based on the fingerprint region still persist. In addition, the Raman spectral signal of dysplastic cells is one important source of misdiagnosis of normal versus pathological tissues. The high wavenumber …

Raman Spectroscopy For Screening And Diagnosis Of Cervical Cancer, Fiona Lyng, Damien Traynor, Ines Rm Ramos, Franck Bonnier, Hugh Byrne

Articles

Cervical cancer is the fourth most common cancer in women worldwide and mainly affects younger women. The mortality associated with cervical cancer can be reduced if this disease is detected at the pre-cancer stage. Current gold standard methods include cytopathology, HPV testing and histopathology but these methods are limited in terms of subjectivity, cost and time. There is an unmet clinical need for new methods to aid clinicians in the early detection of cervical pre-cancer. These methods should be objective, rapid and require minimal sample preparation. Raman spectroscopy is a vibrational spectroscopic technique by which incident radiation is used to …

Audiovisual Processing Is Abnormal In Parkinson's Disease And Correlates With Freezing Of Gait And Disease Duration, Conor Fearon, John Butler, Louise Newman, Timothy Lynch, Richard B. Reilly

Articles

Background: Sensory and perceptual disturbances progress with disease duration in Parkinson’s disease (PD) and probably contribute to motor deficits such as bradykinesia and gait disturbances, including freezing of gait (FOG). Simple reaction time tests are ideal to explore sensory processing, as they require little cognitive processing. Multisensory integration is the ability of the brain to integrate sensory information from multiple modalities into a single coherent percept, which is crucial for complex motor tasks such as gait. 9 10 11 12 13 Objectives: The aims of this study were to: 1. Assess differences in unisensory (auditory and visual) and multisensory processing …

Determination Of Nanoparticle Localisation Within Subcellular Organelles In Vitro Using Raman Spectroscopy, Esen Efeoglu, Mark Keating, Jennifer Mcintyre, Alan Casey, Hugh Byrne

Articles

Ease of sample preparation, narrow spectral bandwidth and minimal influence from water are features of Raman spectroscopy which make it a powerful, label-free way to study a wide range of biological structures and phenomena. In this context, given the concerns over their toxicology arising from their increased production and use, evaluation of nanoparticle uptake and localisation in biological systems and determination of the mechanisms of subcellular interaction and trafficking can provide long-term solutions for nanotoxicology, and potential strategies for nanomedicine. In this study, Raman spectroscopy is explored to monitor the sequential trafficking of nanoparticles through subcellular organelles in-vitro and to …

Investigating The Role Of Shape On The Biological Impact Of Gold Nanoparticles In Vitro, Furong Tian, Hugh Byrne, Joao Conde, Tobias Stoeger, Martin Clift,, Alan Casey, Pablo Del Pino, Beatriz Pelaz, Barbara Rothen-Rutishauser,, Giovani Estrada, Jesús De La Fuente

Articles

Aim: To investigate the influence of gold nanoparticle (GNP) geometry on the biochemical response of Calu-3 epithelial cells.

Materials and Methods: Spherical, triangular and hexagonal GNPs were used. The GNP-cell interaction was assessed via atomic absorption spectroscopy (AAS) and transmission electron microscopy (TEM). The biochemical impact of GNPs was determined over 72hrs at [0.0001-1mg/mL].

Results: At 1mg/mL, hexagonal GNPs reduced Calu-3 viability below 60%, showed increased reactive oxygen species production and higher expression of pro-apoptotic markers. A cell mass burden of 1:2:12 as well as number of GNPs per cell (2:1:3) was observed for spherical:triangular:hexagonal GNPs.

Conclusion:

These findings do …

Bis(Spirolactam) 1,3-Double-Armed Calix[4]Arene Compounds And Their Application As Extractants For The Determination Of Heavy Metal Ions, Fintan Kelleher, Mary Deasy, James Ward, Li Li, Fiona Regan

Articles

A number of double-armed calix[4]arene compounds, with proline-derived spirolactam ligating groups on the lower rim, have been synthesised and investigated as extractants of toxic heavy metal ions from aqueous solution. Pedersen’s extraction technique was employed to determine the capability of these new 1,3-distal derived calix[4]arene spiroalactams to extract selected heavy metal ions (e.g. Pb²⁺, Cd²⁺, Zn²⁺, Cu²⁺, Ni²⁺, Co²⁺) from an aqueous phase into an organic phase. The percentage extraction was calculated using UV-vis spectroscopy. All of the compounds synthesised demonstrated good selectivity for the heavy metals selected …

Free Energies And Minimal States For Scalar Linear Viscoelasticity, John Murrough Golden

Articles

The concept of a minimal state was introduced in recent decades, based on earlier work by Noll. The property that a given quantity is a functional of the minimal state is of central interest in the present work. Using a standard representation of a free energy associated with a linear memory constitutive relation, a new condition, involving linear functionals, is derived which, if satisfied, ensures that the free energy is a functional of the minimal state. Using this result and recent work on constructing free energy functionals, it is shown that if the kernel of the rate of dissipation functional …

Determination Of The Polymerisation Rate Of A Low-Toxicity Diacetone Acrylamide-Based Holographic Photopolymer Using Raman Spectroscopy, Dervil Cody, Emilia Mihaylova, Luke O'Neill, Izabela Naydenova

Articles

The polymerisation rate of a low-toxicity Diacetone Acrylamide (DA)-based photopolymer has been measured for the first time using Raman spectroscopy. A value for the polymerisation rate of 0.020 s⁻¹ has been obtained for the DA photopolymer by modelling the polymerisation reaction dynamics as a stretched exponential or Kohlrausch decay function. This is significantly lower than the polymerisation rate of 0.100 s⁻¹ measured for the well known Acrylamide (AA)-based photopolymer composition. The effect of the additive glycerol on the polymerisation rate of the DA-based photopolymer has also been investigated. The inclusion of glycerol is observed to increase the rate …

Age-Related Sexual Dimorphism In Temporal Discrimination And In Adult-Onset Dystonia Suggests Gabaergic Mechanisms, John Butler, Ines M. Beiser, Laura Williams, Eavan Mcgovern, Fiona Molloy, Timothy Lynch, Dan G. Healy, Helena Moore, Richard Walsh, Richard B. Reilly, Sean O'Riordan, Cathal Walsh, Michael Hutchinson

Articles

Background: Adult-onset isolated focal dystonia (AOIFD) presenting in early adult life is more frequent in men, whereas in middle age it is female predominant. Temporal discrimination, an endophenotype of adult-onset idiopathic isolated focal dystonia, shows evidence of sexual dimorphism in healthy participants. Objectives: We assessed the distinctive features of age-related sexual dimorphism of (i) sex ratios in dystonia phenotypes and (ii) sexual dimorphism in temporal discrimination in unaffected relatives of cervical dystonia patients. Methods: We performed (i) a meta-regression analysis of the proportion of men in published cohorts of phenotypes of adult-onset dystonia in relation to their mean age of …

Vibrational Spectroscopic Studies To Elucidate The Structure Of Water At Biological Interfaces, Bahar Bahrani, Luke O'Neill, Hugh Byrne

Articles

In biological systems, water takes up to 80% of the volume inside a cell. This water solubilizes the biological macromolecules such as the DNA, proteins and lipids. Recent advancements have shown that the water at the interface of a lipid membrane is structured, as five layers of structured water have been found at this solvent cage. Steady state Raman spectroscopy of water in lipids was performed in an attempt to elucidate the structure of water at the biological interface. Deuterium oxide (heavy water) was employed to hydrate lipid biomolecules. The heavier deuterium atom shifts the molecular vibrations and renders them …

Congruent Visual Speech Enhances Entrainment To Continuous Auditory Speech In Noise-Free Conditions, Michael Crosse, John S. Butler, Edmumd Lalor

Articles

Congruent audiovisual speech enhances our ability to comprehend a speaker, even in noise-free conditions. When incongruent auditory and visual information is presented concurrently, it can hinder a listener’s perception and even cause him or her to perceive information that was not presented in either modality. Efforts to investigate the neural basis of these effects have often focused on the special case of discrete audiovisual syllables that are spatially and temporally congruent, with less work done on the case of natural, continuous speech. Recent electrophysiological studies have demonstrated that cortical response measures to continuous auditory speech can be easily obtained using …

Cellular Discrimination Using In Vitro Raman Micro Spectroscopy: The Role Of The Nucleolus, Hugh Byrne

Articles

Raman micro spectroscopy has attracted considerable attention over the last few years to explore its possible clinical applications as a non-invasive powerful label-free in vitro screening tool in cancer diagnosis and monitoring, subcellular analysis of biochemical processes, drug uptake, mode of action and mechanisms of interaction as well as toxicity of, for example, chemotherapeutic agents.

However, in order to evaluate accurately the potential of Raman micro spectroscopy for such applications it is essential to optimise measurement and data processing protocols associated with subcellular analysis. To this end, in vitro differentiation of cell lines is a basic proof of concept for …

Spectroscopic Characterization Of A Radio-Frequency Argon Plasma Jet Discharge In Ambient Air, Patrick Cullen, Vladimir Milosavljevic

Articles

This study includes a detailed experimental investigation of the spatial and temporal spectroscopic emission of an argon plasma jet discharge. The study is carried out in ambient air and quenching by inflowing air species is considered. The optical emission spectroscopy of neutral atomic spectral lines and molecular bands, over a range of plasma process parameters, is investigated. Wavelength-resolved argon optical emission profiles are used to monitor the electron energy distribution function and the density of argon metastable atoms. The experimental data indicates that the argon flow rate, in a confined open-air plasma discharge, limits the impact of molecular oxygen in …

Effect Of The Condensation Of Hybrid Organic–Inorganic Sol–Gel Materials On The Optical Properties Of Tripan Blue, Craig Hicks, Muhammad Morshed, Garrett Melia, Killian Barton, Brendan Duffy, Mohamed Oubaha

Articles

The work reported in this paper highlights the effect of sol–gel structures on the optical properties of a typical organic dye (Trypan Blue, TB). Three transition-metal-based hybrid sol–gel materials with different structures and morphologies were developed and characterised by TEM. The optical properties of TB were investigated by incorporating it in the different sol–gel materials and the UV–Visible spectra recorded in both liquid and solid state, in thin-coatings cured at temperatures in the range 100– 150 [1]C. These studies revealed two relevant results. First, the sol–gel morphology plays a critical role in the optical properties of the dye. The effect …

Optimal Choice Of Sample Substrate And Laser Wavelength For Raman Spectroscopic Analysis Of Biological Specimen, Hugh Byrne, Laura Kerr, Bryan M. Hennelly

Articles

Raman spectroscopy is an optical technique based on the inelastic scattering of monochromatic light that can be used to identify

the biomolecular composition of biological cells and tissues. It can be used as both an aid for understanding the etiology

of disease and for accurate clinical diagnostics when combined with multivariate statistical algorithms. This method is nondestructive,potentially non-invasive and can be applied in vitro or in vivo directly or via a fiber optic probe. However, there exists a high degree of variability across experimental protocols, some of which result in large background signals that can often overpower the weak Raman …

Precision Measurements Of A1n In The Deep Inelastic Regime, Diana S. Parno, David Flay, Matthew Posik, Kalyan C. Allada, Whitney Armstrong, Todd Averett, Fatiha Benmokhtar, William Bertozzi, Alexandre Camsonne, Mustafa Canan, Gordon D. Cates, Chunhua Chen, Jian-Ping Chen, Sunghyun Choi, Eugene Chudakov, Francesco Cusanno, Mark M. Dalton, Wouter Deconick, Kees W. De Jager, Xiaochao Deng, Alexandre Deur, Chiranjib Dutta, Lamiaa El Fassi, Gregg B. Franklin, Megan Friend, Haiyan Gao, Franco Garibaldi, Shalev Gilad, Ronald Gilman, Oleksandr Glamazdin, Serkan Golge, Javier Gomez, Lei Guo, Ole Hansen, Douglas W. Higenbotham, Timothy Holmstrom, Jacob Huang, Charles Hyde, Hassan F. Ibrahim, Xiaodong Jiang, Ge Jin, Joseph Katich, Aidan Kelleher, Ameya Kolarkar, Wolfgang Korsch, Gerfried Kumbartzki, John J. Lerose, Richard Lindgren, Nilanga Liyanage, Elena Long, Alex Lukhanin, Vahe Mamyan, Dustin Mcnulty, Zein-Eddine Meziani, Robert Michaels, Miha Mihovilovic, Bryan Moffit, Navaphon Muangma, Sirish Nanda, Amrendra Narayan, Vladimir Nelyubin, Blaine Norum, Nuruzzaman Nuruzzaman, Yoomin Oh, Jen-Chieh Peng, Xin Qian, Yi Qiang, Abdurahim Rakhman, Seamus Riordan, Arun Saha, Bradley Sawatzky, Mitra H. Shabestari, Albert Shahinyan, Simon Širca, Patricia Solvignon, Ramesh Subedi, Vincent Sulkosky, William A. Tobias, Wolfgang Troth, Diancheng Wang, Youcai Wang, Bogdan Wojtsekhowski, Xinhu Yan, Huan Yao, Yunxiu Ye, Zhihong Ye, Lulin Yuan, Xiaohui Zhan, Li Zhang, Yawei Zhang, Bo Zhao, Xiaochao Zheng

Articles

We have performed precision measurements of the double-spin virtual-photon asymmetry A₁A1 on the neutron in the deep inelastic scattering regime, using an open-geometry, large-acceptance spectrometer and a longitudinally and transversely polarized ³He target. Our data cover a wide kinematic range 0.277≤x≤0.5480.277≤x≤0.548 at an average Q²Q2 value of 3.078 (GeV/c)², doubling the available high-precision neutron data in this x range. We have combined our results with world data on proton targets to make a leading-order extraction of the ratio of polarized-to-unpolarized parton distribution functions for up quarks and for down quarks in the same …

On Mikhailov's Reduction Group, Tihomir Valchev

Articles

We present a generalization of the notion of reduction group which allows one to study in a uniform way certain classes of nonlocal $S$-integrable equations like Ablowitz-Musslimani's nonlocal Schr\"odinger equation. Another aspect of the proposed generalization is the possibility to derive in a systematic way solutions to S-integrable equations with prescribed symmetries.

Raman Micro Spectroscopy For In Vitro Drug Screening: Subcellular Localisation And Interactions Of Doxorubicin, Zeineb Farhane, Franck Bonnier, Alan Casey, Hugh Byrne

Articles

Vibrational spectroscopy, including Raman spectroscopy, has been widely used over the last few years to explore potential biomedical applications. Indeed, Raman spectroscopy has been demonstrated to be a powerful non-invasive tool in cancer diagnosis and monitoring. In confocal microscopic mode, the technique is also a molecularly specific analytical tool with optical resolution which has potential applications in subcellular analysis of biochemical processes, and therefore as an in vitro screening tool of the efficacy and mode of action of, for example, chemotherapeutic agents.

In order to demonstrate and explore the potential in this field, established, model chemotherapeutic agents can be valuable. …

Measurement Of Parity-Violating Asymmetry In Electron-Deuteron Inelastic Scattering, Wouter Deconinck

Articles

The parity-violating asymmetries between a longitudinally polarized electron beam and an unpolarized deuterium target have been measured recently. The measurement covered two kinematic points in the deep-inelastic scattering region and five in the nucleon resonance region. We provide here details of the experimental setup, data analysis, and results on all asymmetry measurements including parity-violating electron asymmetries and those of inclusive pion production and beam-normal asymmetries. The parity-violating deep-inelastic asymmetries were used to extract the electron-quark weak effective couplings, and the resonance asymmetries provided the first evidence for quark-hadron duality in electroweak observables. These electron asymmetries and their interpretation were published …

Multivariate Statistical Methodologies Applied In Biomedical Raman Spectroscopy: Assessing The Validity Of Partial Least Squares Regression Using Simulated Model Datasets., Mark Keating

Articles

Raman spectroscopy is fast becoming a valuable analytical tool in a number of biomedical scenarios, most notably disease diagnostics. Importantly, the technique has also shown increasing promise in the assessment of drug interactions on a cellular and subcellular level, particularly when coupled with multivariate statistical analysis. However, an important consideration, both with Raman spectroscopy and the associated statistical methodologies, is the accuracy of these techniques and more specifically the sensitivities which can be achieved and ultimately the limits of detection of the various methods. The purpose of this study is thus the construction of a model simulated data set with …

Optical Diagnostics – Spectropathology For The Next Generation, Malgorzata Baranska, Hugh Byrne

Articles

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Exploring The Unknown: Electrophysiological And Behavioural Measures Of Visuospatial Learning, Brendan Quinlivan, John Butler, Abdur R. Ridwan, Ines Beiser, Laura Williams, Eavan Mcgovern, Sean O'Riordan, Michael Hutchinson, Richard B. Reilly

Articles

Visuospatial memory describes our ability to temporarily store and manipulate visual and spatial information, and is employed for a wide variety of complex cognitive tasks. Here, a visuospatial learning task requiring fine motor control is employed to investigate visuospatial learning in a group of typically developing adults. Electrophysiological and behavioural data are collected during a target location task under two experimental conditions: Target Learning and Target Cued. Movement times (MTs) are employed as a behavioural metric of performance, while dynamic P3b amplitudes and power in the alpha band (approximately 10 Hz) are explored as electrophysiological metrics during visuospatial learning. Results …

Spectropathology For The Next Generation: Quo Vadis?, Hugh Byrne, Malgorzata Baranska, Gerwin J. Pupples, Nick Stone, Bayden Wood, Kathleen M. Gough, Peter Lasch, Phil Heraud, Josep Sulé-Suso, Ganesh Sockalingum

Articles

Although the potential of vibrational spectroscopy for biomedical applications has been well demonstrated, translation into clinical practice has been relatively slow. This Editorial assesses the challenges facing the field and the potential way forward. While many technological challenges have been addressed to date, considerable effort is still required to gain acceptance of the techniques among the medical community, standardise protocols, extend to a clinically relevant scale, and ultimately assess the health economics underlying clinical deployment. National and international research networks can contribute much to technology development and standardisation. Ultimately, large-scale funding is required to engage in clinical trials and instrument …

Lightening Strikes Twice For Dit Geomatics, Audrey Martin

Articles

The Technological University Dublin (DIT) is rapidly becoming known as an international centre for excellence for all things geospatial. In September 2014, Kevin O'Mahony, a final-year BSc Geomatics student, won the international Trimble Geospatial Student Competition. Kevin is the second consecutive DIT student to win this prestigious award, following on from the success of David Hyland (BSc Geomatics) in 2012. Both students submitted their papers under the supervision of Dr Audrey Martin FSCSI FRICS, Chair of the recently accredited (by SCSI) DIT MSc in Geospatial Engineering. The worldwide student competition is held every two years and is open to all …

Vibrational Microspectroscopy For Cancer Screening, Fiona Lyng, Ines Ramos, Ola Ibrahim, Hugh Byrne

Articles

Vibrational spectroscopy analyses vibrations within a molecule and can be used to characterise a molecular structure. Raman spectroscopy is one of the vibrational spectroscopic techniques, in which incident radiation is used to induce vibrations in the molecules of a sample, and the scattered radiation may be used to characterise the sample in a rapid and non-destructive manner. Infrared (IR) spectroscopy is a complementary vibrational spectroscopic technique based on the absorption of IR radiation by the sample. Molecules absorb specific frequencies of the incident light which are characteristic of their structure. IR and Raman spectroscopy are sensitive to subtle biochemical changes …

Multivariate Statistical Methodologies Applied In Biomedical Raman Spectroscopy: Assessing The Validity Of Partial Least Squares Regression Using Simulated Model Datasets, Mark E. Keating, Haq Nawaz, Franck Bonnier, Hugh Byrne

Articles

Raman spectroscopy is fast becoming a valuable analytical tool in a number of biomedical scenarios, most notably disease diagnostics. Importantly, the technique has also shown increasing promise in the assessment of drug interactions on a cellular and subcellular level, particularly when coupled with multivariate statistical analysis. However, an important consideration, both with Raman spectroscopy and the associated statistical methodologies, is the accuracy of these techniques and more specifically the sensitivities which can be achieved and ultimately the limits of detection of the various methods. The purpose of this study is thus the construction of a model simulated data set with …

And Or Not – The System, The Body And Time, Brian Fay

Articles

This catalogue text discusses artists and artworks featured in the exhibition BOOLEAN EXPRESSIONS: Contemporary Art and Mathematical Data, presented at The Lewis Glucksman Gallery, University College Cork, Ireland, 23 July – 8 November 2015. For an overview of the exhibition see the link https://vimeo.com/137620854

Dual Targeted Immunotherapy Via In Vivo Delivery Of Bio-Hybrid Rnai-Peptide Nanoparticles To Tumour-Associated Macrophages And Cancer Cells, Joao Conde, Chenchen Bao, Yeqi Tan, Daxiang Cui, Elazier Edelman, Helena Azevedo, Hugh Byrne, Natalie Artzi, Furong Tian

Articles

Lung cancer is associated with very poor prognosis and considered one of the leading causes of death worldwide. Here, we present highly potent and selective bio-hybrid RNAi-peptide nanoparticles that can induce specific and long-lasting gene therapy in inflammatory tumour associated macrophages (TAMs), via an immune modulation of the tumour milieu combined with tumour suppressor effects. Our data prove that passive gene silencing can be achieved in cancer cells using regular RNAi NPs. When combined with M2 peptide-based targeted immunotherapy that immuno-modulates TAMs cell-population, a synergistic effect and long-lived tumour eradication can be observed along with increased mice survival. Treatment with …