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Full-Text Articles in Physical Sciences and Mathematics

A Mechanism Of Glucose Tolerance And Stimulation Of Gh1 Β-Glucosidases, Yang Yang, Xinxin Zhang, Qiang Yin, Wei Fang, Zemin Fang, Xiaotang Wang, Xuecheng Zhang, Yazhong Xiao Nov 2015

A Mechanism Of Glucose Tolerance And Stimulation Of Gh1 Β-Glucosidases, Yang Yang, Xinxin Zhang, Qiang Yin, Wei Fang, Zemin Fang, Xiaotang Wang, Xuecheng Zhang, Yazhong Xiao

Department of Chemistry and Biochemistry

β-Glucosidases are enzymes that hydrolyze β-glycosidic bonds to release non-reducing terminal glucosyl residues from glycosides and oligosaccharides, and thus have significant application potential in industries. However, most β-glucosidases are feedback inhibited by the glucose product, which restricts their application. Remarkably, some β-glucosidases of the glycoside hydrolase (GH) 1 family are tolerant to or even stimulated by glucose. Elucidation of the mechanisms of glucose tolerance and stimulation of the GH1 β-glucosidases will be crucial to improve their application through enzyme engineering. In this study, by comparing the primary and tertiary structures of two GH1 β-glucosidases with distinct glucose dependence, some putative …


Development Of A Two-Fluid Drag Law For Clustered Particles Using Direct Numerical Simulation And Validation Through Experiments, Ahmadreza Abbasi Baharanchi Nov 2015

Development Of A Two-Fluid Drag Law For Clustered Particles Using Direct Numerical Simulation And Validation Through Experiments, Ahmadreza Abbasi Baharanchi

FIU Electronic Theses and Dissertations

This dissertation focused on development and utilization of numerical and experimental approaches to improve the CFD modeling of fluidization flow of cohesive micron size particles. The specific objectives of this research were: (1) Developing a cluster prediction mechanism applicable to Two-Fluid Modeling (TFM) of gas-solid systems (2) Developing more accurate drag models for Two-Fluid Modeling (TFM) of gas-solid fluidization flow with the presence of cohesive interparticle forces (3) using the developed model to explore the improvement of accuracy of TFM in simulation of fluidization flow of cohesive powders (4) Understanding the causes and influential factor which led to improvements and …


Organometallic Rhenium Dyes For Nitric Oxide Detection And Imaging, Lissette I. Lozano-Lewis Nov 2015

Organometallic Rhenium Dyes For Nitric Oxide Detection And Imaging, Lissette I. Lozano-Lewis

FIU Electronic Theses and Dissertations

The importance of sensing Nitric Oxide (NO) in physiology and medicine has led us to explore the reactivity of NO with organometallic Re dyes. Rhenium complexes were synthesized with the ability to react with NO and sense it under physiological conditions. Fluorescent 1,10-phenantroline complexes (phen)Re(PPh3)(CO)2OSO2CF3 (1) and (phen)Re(CH3CN)(CO)2OSO2CF3 (3) can sense NO in the range of 10 - 150 mM showing a decrease in fluorescence response at 514 nm and 532 nm respectively, upon NO-donor addition (lexc = 360 nm). (phen)Re(THF)(CO)2OSO2CF …


Development Of A Maldi-Tof-Ms Method For The Analysis Of Cyanobacterial Neurotoxin Β-N-Methylamino-L-Alanine (Bmaa) In Search Of Bmaa Incorporation In Biological Samples, Laura M. Conklin Nov 2015

Development Of A Maldi-Tof-Ms Method For The Analysis Of Cyanobacterial Neurotoxin Β-N-Methylamino-L-Alanine (Bmaa) In Search Of Bmaa Incorporation In Biological Samples, Laura M. Conklin

FIU Electronic Theses and Dissertations

Beta-N-methylamino-L-alanine (BMAA) is a non-protein amino acid produced by many cyanobacteria, and thought to induce neurotoxic effects through excitotoxicity, contributing to neurodegenerative diseases such as Amyotrophic Lateral Sclerosis/Parkinsonism-dementia complex (ALS-PDC) and Alzheimer’s. The ubiquitous nature of cyanobacteria, and evidence of biomagnification through our food web, creates a dire need for the development of an analytical platform that will provide accurate identification and quantification of BMAA amounts in our ecosystem and potential food supply. The present study evaluated the ability of a MALDI-ToF-MS method to detect and quantify BMAA in a variety of biological matrices. Through validation procedures, it …


The Effect Of Disturbance And Freshwater Availability On Lower Florida Keys’ Coastal Forest Dynamics, Danielle E. Ogurcak Nov 2015

The Effect Of Disturbance And Freshwater Availability On Lower Florida Keys’ Coastal Forest Dynamics, Danielle E. Ogurcak

FIU Electronic Theses and Dissertations

Coastal forest retreat in the Florida Keys during the 20th century has been attributed to a combination of sea level rise and hurricane storm surge impacts, but the interactions between these two disturbances leading to forest decline are not well understood. The goal of my research was to assess their effects over a period spanning more than two decades, and to examine the relationships between these press and pulse disturbances and freshwater availability in pine rockland, hardwood hammock, and supratidal scrub communities. Impacts and recovery from two storm surges, Hurricanes Georges (1998) and Wilma (2005), were assessed with satellite-derived …


Fast Detection And Chemical Characterization Of Gunshot Residues By Cmv-Gc-Ms And Libs, Anamary Tarifa Nov 2015

Fast Detection And Chemical Characterization Of Gunshot Residues By Cmv-Gc-Ms And Libs, Anamary Tarifa

FIU Electronic Theses and Dissertations

Gunshot residue (GSR) is the term used to describe the particles originating from different parts of the firearm and ammunition during the discharge. A fast and practical field tool to detect the presence of GSR can assist law enforcement in the accurate identification of subjects.

A novel field sampling device is presented for the first time for the fast detection and quantitation of volatile organic compounds (VOCs). The capillary microextraction of volatiles (CMV) is a headspace sampling technique that provides fast results (< 2 min. sampling time) and is reported as a versatile and high-efficiency sampling tool. The CMV device can be coupled to a Gas Chromatography-Mass Spectrometry (GC-MS) instrument by installation of a thermal separation probe in the injection port of the GC.

An analytical method using the CMV device was developed for the detection of 17 compounds commonly found …


Linkages Among Fluorescent Dissolved Organic Matter, Dissolved Amino Acids And Lignin-Derived Phenols In A River-Influenced Ocean Margin, Youhei Yamashita, Cedric G. Fichot, Yuan Shen, Rudolf Jaffe, Ronald Benner Nov 2015

Linkages Among Fluorescent Dissolved Organic Matter, Dissolved Amino Acids And Lignin-Derived Phenols In A River-Influenced Ocean Margin, Youhei Yamashita, Cedric G. Fichot, Yuan Shen, Rudolf Jaffe, Ronald Benner

Department of Chemistry and Biochemistry

Excitation emission matrix (EEM) fluorescence spectroscopy coupled with parallel factor analysis (PARAFAC) is commonly used to investigate the dynamics of dissolved organic matter (DOM). However, a lack of direct comparisons with known biomolecules makes it difficult to substantiate the molecular composition of specific fluorescent components. Here, coincident surface-water measurements of EEMs, dissolved lignin, and total dissolved amino acids (TDAA) acquired in the northern Gulf of Mexico were used to investigate the relationships between specific fluorescent components and DOM biomolecules. Two terrestrial humic-like components identified by EEM-PARAFAC using samples obtained from river to offshore waters were strongly linearly correlated with dissolved …


The Influence Of The Proximal Amide Hydrogen Bonds And The Proximal Helix Dipole On The Catalytic Activity Of Chloroperoxidase, Armando D. Pardillo Nov 2015

The Influence Of The Proximal Amide Hydrogen Bonds And The Proximal Helix Dipole On The Catalytic Activity Of Chloroperoxidase, Armando D. Pardillo

FIU Electronic Theses and Dissertations

Chloroperoxidase (CPO) is a heme-thiolate protein with exceptional versatility and great potential as a biocatalyst. The CPO reactive species, Compound I ( Cpd I) is of particular interest, as well as the Cytochrome P450 (P450) -type monoxygenase catalytic activity, which has significant biotechnological potential. Proximal hydrogen bonding of the axial sulfur with the backbone amides (NH•••S) is a conserved feature of heme-thiolate enzymes. In CPO, the effect of NH•••S bonds is amplified by the dipole moment of the proximal helix. The role of the proximal region has been disputed as to whether it simply protects the axial sulfur, or whether …


Elemental Analysis Of Printing Inks Using Tandem Laser- Induced Breakdown Spectroscopy And Laser Ablation Inductively Coupled Plasma Mass Spectrometry, Kiran Subedi Oct 2015

Elemental Analysis Of Printing Inks Using Tandem Laser- Induced Breakdown Spectroscopy And Laser Ablation Inductively Coupled Plasma Mass Spectrometry, Kiran Subedi

FIU Electronic Theses and Dissertations

As a consequence of the widespread use of computers coupled to high-quality printers and different types of papers, forgery, counterfeiting, change of wills, anonymous letter writing and felonious use of the documents have become serious problems. Forensic analysts are always seeking methods that can provide reliable information on whether a specimen collected at the crime scene is linked to the crime or to a source of known origin. Sensitive methods that can provide more detailed characterization of natural or man-made materials or even provide information not previously available to forensic examiners.

Recent advances in rapid solid sampling of materials using …


Synthesis And Characterization Of Photochromic Copolymers Containing 3-Indolylfulgides/Indolylfulgimides, Changjun Fan Oct 2015

Synthesis And Characterization Of Photochromic Copolymers Containing 3-Indolylfulgides/Indolylfulgimides, Changjun Fan

FIU Electronic Theses and Dissertations

Fulgides and fulgimides are important organic photochromic compounds and can switch between the open forms and the closed forms with light. The 3-indolylfulgides and 3-indolylfulgimides exhibit promising photochromic properties and have great potential in optical memory devices, optical switches and biosensors. Copolymers containing 3-indolylfulgides/indolylfulgimides synthesized via free radical polymerizations increase conformation changes and allow the photochromic compounds to be uniformly distributed in the polymer matrix.

A trifluoromethyl 3-indolylfulgide and two trifluoromethyl 3-indolylfulgimides with one or two polymerizable N-stryryl group(s) were prepared. Copolymerization with methyl methacrylate provided two linear copolymers or a cross-linked copolymer. The properties of the monomeric fulgide/fulgimides …


Comprehensive Analysis Of Emerging New Psychoactive Substances By Ion Mobility Spectrometry And Mass Spectrometry, Seongshin Gwak Sep 2015

Comprehensive Analysis Of Emerging New Psychoactive Substances By Ion Mobility Spectrometry And Mass Spectrometry, Seongshin Gwak

FIU Electronic Theses and Dissertations

In the new era of drug abuse, the proliferation of new psychoactive substances (NPS), commonly referred to as designer drugs or legal highs, has been a global concern. These substances are produced to circumvent current legislation for controlled substances with minor modifications in their chemical structure. Although many efforts have been made previously, the characterization of such substances are still challenging because of (1) the continual emergence of newly identified substances, (2) the lack of a universal screening test for NPS that are structurally similar to each other, and (3) the complex and time-consuming chromatographic techniques currently used. Therefore, it …


Strain Promoted Click Chemistry Of 2- Or 8-Azidopurine And 5-Azidopyrimidine Nucleosides And 8-Azidoadenosine Triphosphate With Cyclooctynes. Application To Living Cell Fluorescent Imaging, Jessica Zayas, Marie Annoual, Jayanta K. Das, Quentin Felty, Walter Gonzalez, Jaroslava Miksovska, Nima Sharifai, Akira Chiba, Stanislaw F. Wnuk Aug 2015

Strain Promoted Click Chemistry Of 2- Or 8-Azidopurine And 5-Azidopyrimidine Nucleosides And 8-Azidoadenosine Triphosphate With Cyclooctynes. Application To Living Cell Fluorescent Imaging, Jessica Zayas, Marie Annoual, Jayanta K. Das, Quentin Felty, Walter Gonzalez, Jaroslava Miksovska, Nima Sharifai, Akira Chiba, Stanislaw F. Wnuk

Environmental Health Sciences

Strain-promoted click chemistry of nucleosides and nucleotides with an azido group directly attached to the purine and pyrimidine rings with various cyclooctynes in aqueous solution at ambient temperature resulted in efficient formation (3 min to 3 h) of fluorescent, light-up, triazole products. The 2- and 8-azidoadenine nucleosides reacted with fused cyclopropyl cyclooctyne, dibenzylcyclooctyne, or monofluorocyclooctyne to produce click products functionalized with hydroxyl, amino, N-hydroxysuccinimide, or biotin moieties. The 5-azidouridine and 5-azido-2'-deoxyuridine were similarly converted to the analogous triazole products in quantitative yields in less than 5 min. The 8-azido-ATP quantitatively afforded the triazole product with fused cyclopropyl cyclooctyne in aqueous …


Determination Of Extracellular Molecules Produced By Vibrio Harveyi Using Ms/Ms, Jose G. Roble Jul 2015

Determination Of Extracellular Molecules Produced By Vibrio Harveyi Using Ms/Ms, Jose G. Roble

FIU Electronic Theses and Dissertations

Quorum sensing (QS) is a process that allows bacteria to sense the population density of cells around them by communicating with each other via autoinducer molecules. This cross-communication is crucial in the regulation of bacterial processes such as bioluminescence, virulence, and biofilm formation. Previous research by Milburn and Makemson on Vibrio harveyi suggested that in addition of the known biosynthesis of three well-characterized autoinducers, dozens of unknown molecules are also produced and released to the environment by V. harveyi. This study was performed using electrospray tandem mass spectrometry with the purpose of detection and characterization of the extracellular molecules …


Mangiferin As A Biomarker For Mango Anthracnose Resistance, Herma Pierre Jul 2015

Mangiferin As A Biomarker For Mango Anthracnose Resistance, Herma Pierre

FIU Electronic Theses and Dissertations

Mangos (Mangifera indica L.) are tropical/subtropical fruits belonging to the plant family Anacardiaceae. Anthracnose is the most deleterious disease of mango both in the field and during postharvest handling. It is most commonly caused by the Colletotrichum gloeosporioides complex. Mangiferin, a xanthanoid compound found in at least twelve plant families worldwide (Luo et al., 2012), is present in large amounts of the leaves and edible mangos. Even though this compound plays a pivotal role in the plant’s defense against biotic and abiotic stressors, no correlations been made between the compound and mango anthracnose resistance.

Mangos were collected, grouped …


Target And Non-Target Techniques For The Quantitation Of Drugs Of Abuse, Identification Of Transformation Products, And Characterization Of Contaminants Of Emergent Concern By High Resolution Mass Spectrometry, Nubia Vanesa Heuett Jun 2015

Target And Non-Target Techniques For The Quantitation Of Drugs Of Abuse, Identification Of Transformation Products, And Characterization Of Contaminants Of Emergent Concern By High Resolution Mass Spectrometry, Nubia Vanesa Heuett

FIU Electronic Theses and Dissertations

Development and application of target and non-target techniques for routine analysis, identification of transformation products, and characterization of unknown compounds in water matrices using liquid-chromatography high-resolution mass spectrometry (HRMS) were explored in this dissertation. A novel analytical method based on online-SPE-LC-HRMS was developed for the detection of 18 drugs of abuse (DOAs) in raw sewage water from a college campus. Results showed the presence of 14 DOAs for which amphetamine and 11-nor-9-carcoxy-THC (THC metabolite) were the most prevalent and had the highest potential consumption rates.

A second study dedicated to the identification of transformation products (TPs) generated from DOAs was …


Strain Promoted Click Chemistry Of 8-Azidopurine And 5-Azidopyrimidine Nucleosides And Nucleotides With Cyclooctynes And Applications To Living Cell Imaging, Jessica Zayas Jun 2015

Strain Promoted Click Chemistry Of 8-Azidopurine And 5-Azidopyrimidine Nucleosides And Nucleotides With Cyclooctynes And Applications To Living Cell Imaging, Jessica Zayas

FIU Electronic Theses and Dissertations

The strain promoted azide alkyne cycloaddition (SPAAC) of azido nucleobase modified nucleosides and nucleotides with cyclooctynes to give fluorescent triazoles has been relatively unexplored. Thus, SPAAC between azido-nucleobases and various cyclooctynes in aqueous solution at ambient temperature resulted in the efficient formation (3 min - 2 h) of triazole products with inherent fluorescent properties. The 2- and 8-azidoadenine nucleosides reacted with fused cyclopropyl cyclooctyne, dibenzylcyclooctyne or monofluorocyclooctyne to produce click products functionalized with hydroxyl, amino, N-hydroxysuccinimide, or biotin moieties. The previously unexplored 5-azidouridine and labile 5-azido-2'-deoxyuridine were similarly converted to the analogous triazole products in quantitative yields in less …


Black Carbon: Sources, Mobility And Fate In Freshwater Systems, Sasha Wagner Jun 2015

Black Carbon: Sources, Mobility And Fate In Freshwater Systems, Sasha Wagner

FIU Electronic Theses and Dissertations

Black carbon (BC) is a complex mixture of polycondensed aromatic compounds produced by the incomplete combustion of biomass during events such as wildfires and the burning of fossil fuels. Black carbon was initially considered to be a refractory form of organic matter. However, recent studies have shown that BC can be quite mobile and reactive in the terrestrial environment. Black carbon can be translocated from soils and sediments in the form of dissolved BC (DBC). A global correlation between DBC and bulk dissolved organic carbon (DOC) has been established for fluvial systems where DBC comprises approximately 10% of the total …


Analysis Of Synthetic Cannabinoids By Direct Analysis In Real Time Quadrupole Time-Of-Flight Mass Spectrometry And Gas Chromatography Quadrupole Time-Of-Flight Mass Spectrometry, Tyler S. Torbet Jun 2015

Analysis Of Synthetic Cannabinoids By Direct Analysis In Real Time Quadrupole Time-Of-Flight Mass Spectrometry And Gas Chromatography Quadrupole Time-Of-Flight Mass Spectrometry, Tyler S. Torbet

FIU Electronic Theses and Dissertations

The aim of this study was to investigate the utility of direct analysis in real time quadrupole time-of-flight mass spectrometry and gas chromatography quadrupole time-of-flight mass spectrometry in the analysis of 162 different synthetic cannabinoids. Direct analysis in real time quadrupole time-of-flight mass spectrometry is shown to be a rapid and accurate analytical method for synthetic cannabinoids. Spectra can be generated with less than 1.5 ng of the drug in under a minute and be successfully searched against previously generated ESI-QTOF libraries in most cases (118/130 drugs tested) as well as can also be applied to the identification of synthetic …


Ap Endonuclease 1 Prevents Trinucleotide Repeat Expansion Via A Novel Mechanism During Base Excision Repair, Jill M. Beaver, Yanhao Lai, Meng Xu, Astrid H. Casin, Eduardo E. Laverde, Yuan Liu May 2015

Ap Endonuclease 1 Prevents Trinucleotide Repeat Expansion Via A Novel Mechanism During Base Excision Repair, Jill M. Beaver, Yanhao Lai, Meng Xu, Astrid H. Casin, Eduardo E. Laverde, Yuan Liu

Department of Chemistry and Biochemistry

Base excision repair (BER) of an oxidized base within a trinucleotide repeat (TNR) tract can lead to TNR expansions that are associated with over 40 human neurodegenerative diseases. This occurs as a result of DNA secondary structures such as hairpins formed during repair. We have previously shown that BER in a TNR hairpin loop can lead to removal of the hairpin, attenuating or preventing TNR expansions. Here, we further provide the first evidence that AP endonuclease 1 (APE1) prevented TNR expansions via its 3′-5′ exonuclease activity and stimulatory effect on DNA ligation during BER in a hairpin loop. Coordinating with …


Oroxylin A Promotes Pten-Mediated Negative Regulation Of Mdm2 Transcription Via Sirt3-Mediated Deacetylation To Stabilize P53 And Inhibit Glycolysis In Wt-P53 Cancer Cells, Kai Zhao, Yuxin Zhou, Chen Qiao, Ting Ni, Zhiyu Li, Xiaotang Wang, Qinglong Guo, Na Lu, Libin Wei Apr 2015

Oroxylin A Promotes Pten-Mediated Negative Regulation Of Mdm2 Transcription Via Sirt3-Mediated Deacetylation To Stabilize P53 And Inhibit Glycolysis In Wt-P53 Cancer Cells, Kai Zhao, Yuxin Zhou, Chen Qiao, Ting Ni, Zhiyu Li, Xiaotang Wang, Qinglong Guo, Na Lu, Libin Wei

Department of Chemistry and Biochemistry

Introduction

p53 plays important roles in regulating the metabolic reprogramming of cancer, such as aerobic glycolysis. Oroxylin A is a natural active flavonoid with strong anticancer effects both in vitro and in vivo.

Methods

wt-p53 (MCF-7 and HCT116 cells) cancer cells and p53-null H1299 cancer cells were used. The glucose uptake and lactate production were analyzed using Lactic Acid production Detection kit and the Amplex Red Glucose Assay Kit. Then, the protein levels and RNA levels of p53, mouse double minute 2 (MDM2), and p53-targeted glycolytic enzymes were quantified using Western blotting and quantitative polymerase chain reaction (PCR), respectively. …


Advanced Oxidation Processes Of Problematic Toxin And Water Contaminants: Cylindrospermopsin, Iopamidol, 4-Methylcyclohexane Methanol And Propylene Glycol Phenyl Ether, Cen Zhao Apr 2015

Advanced Oxidation Processes Of Problematic Toxin And Water Contaminants: Cylindrospermopsin, Iopamidol, 4-Methylcyclohexane Methanol And Propylene Glycol Phenyl Ether, Cen Zhao

FIU Electronic Theses and Dissertations

The occurrences of cyanotoxin and organic contaminants threaten drinking water sources and are a serious human health and environmental concern. The control of these problematic contaminants and the remediation of the associated contaminants are critical for ensuring safe drinking water to significant populations. Advanced oxidation processes (AOPs) have received considerable attention as a potential water treatment for various pollutants. In this dissertation, advanced oxidative degradation of four problematic water toxic contaminants (CYN, iopamidol, 4-methylcyclohexane methanol and propylene glycol phenyl ether) were studied to develop the fundamental understanding required to assess AOPs as a potential water treatment process.

UV and visible …


Identification Of A Laccase Glac15 From Ganoderma Lucidum 77002 And Its Application In Bioethanol Production, Zemin Fang, Xiaoman Liu, Liyuan Chen, Yu Shen, Xuecheng Zhang, Wei Fang, Xiaotang Wang, Xiaoming Bao, Yazhong Xiao Mar 2015

Identification Of A Laccase Glac15 From Ganoderma Lucidum 77002 And Its Application In Bioethanol Production, Zemin Fang, Xiaoman Liu, Liyuan Chen, Yu Shen, Xuecheng Zhang, Wei Fang, Xiaotang Wang, Xiaoming Bao, Yazhong Xiao

Department of Chemistry and Biochemistry

Background

Laccases have potential applications in detoxification of lignocellulosic biomass after thermochemical pretreatment and production of value-added products or biofuels from renewable biomass. However, their application in large-scale industrial and environmental processes has been severely thwarted by the high cost of commercial laccases. Therefore, it is necessary to identify new laccases with lower cost but higher activity to detoxify lignocellulosic hydrolysates and better efficiency to produce biofuels such as bioethanol. Laccases from Ganoderma lucidum represent proper candidates in processing of lignocellulosic biomass.

Results

G. lucidum 77002 produces three laccase isoenzymes with a total laccase activity of 141.1 U/mL within 6 …


Inhibition Of Zn(Ii) Binding Type Ia Topoisomerases By Organomercury Compounds And Hg(Ii), Bokun Cheng, Thirunavukkarasu Annamalai, Shayna Sandhaus, Priyanka Bansod, Yuk-Ching Tse-Dinh Mar 2015

Inhibition Of Zn(Ii) Binding Type Ia Topoisomerases By Organomercury Compounds And Hg(Ii), Bokun Cheng, Thirunavukkarasu Annamalai, Shayna Sandhaus, Priyanka Bansod, Yuk-Ching Tse-Dinh

Department of Chemistry and Biochemistry

Type IA topoisomerase activities are essential for resolving DNA topological barriers via an enzyme-mediated transient single strand DNA break. Accumulation of topoisomerase DNA cleavage product can lead to cell death or genomic rearrangement. Many antibacterial and anticancer drugs act as topoisomerase poison inhibitors that form stabilized ternary complexes with the topoisomerase covalent intermediate, so it is desirable to identify such inhibitors for type IA topoisomerases. Here we report that organomercury compounds were identified during a fluorescence based screening of the NIH diversity set of small molecules for topoisomerase inhibitors that can increase the DNA cleavage product of Yersinia pestis topoisomerase …


The Effect Of Sample And Sample Matrix On Dna Processing: Mechanisms For The Detection And Management Of Inhibition In Forensic Samples, Lilliana I. Moreno Mar 2015

The Effect Of Sample And Sample Matrix On Dna Processing: Mechanisms For The Detection And Management Of Inhibition In Forensic Samples, Lilliana I. Moreno

FIU Electronic Theses and Dissertations

The presence of inhibitory substances in biological forensic samples has, and continues to affect the quality of the data generated following DNA typing processes. Although the chemistries used during the procedures have been enhanced to mitigate the effects of these deleterious compounds, some challenges remain. Inhibitors can be components of the samples, the substrate where samples were deposited or chemical(s) associated to the DNA purification step. Therefore, a thorough understanding of the extraction processes and their ability to handle the various types of inhibitory substances can help define the best analytical processing for any given sample. A series of experiments …


Synthetic Approaches To Flexible Fluorescent Conjugated Polymers, Tereza Vokata Mar 2015

Synthetic Approaches To Flexible Fluorescent Conjugated Polymers, Tereza Vokata

FIU Electronic Theses and Dissertations

Conjugated polymers (CPs) are intrinsically fluorescent materials that have been used for various biological applications including imaging, sensing, and delivery of biologically active substances. The synthetic control over flexibility and biodegradability of these materials aids the understanding of the structure-function relationships among the photophysical properties, the self-assembly behaviors of the corresponding conjugated polymer nanoparticles (CPNs), and the cellular behaviors of CPNs, such as toxicity, cellular uptake mechanisms, and sub-cellular localization patterns.

Synthetic approaches towards two classes of flexible CPs with well-preserved fluorescent properties are described. The synthesis of flexible poly(p-phenylenebutadiynylene)s (PPBs) uses competing Sonogashira and Glaser coupling reactions …


A Rapid And Sensitive High-Throughput Screening Method To Identify Compounds Targeting Protein–Nucleic Acids Interactions, Nicole Alonso, Roboan Guillen Mar 2015

A Rapid And Sensitive High-Throughput Screening Method To Identify Compounds Targeting Protein–Nucleic Acids Interactions, Nicole Alonso, Roboan Guillen

Undergraduate Research at FIU (URFIU) Conference

DNA-binding and RNA-binding proteins are usually considered ‘undruggable’ partly due to the lack of an efficient method to identify inhibitors from existing small molecule repositories. Here we report a rapid and sensitive high-throughput screening approach to identify compounds targeting protein–nucleic acids interactions based on protein–DNA or protein–RNA interaction enzyme-linked immunosorbent assays (PDI-ELISA or PRI-ELISA). We validated the PDI-ELISA method using the mammalian highmobility- group protein AT-hook 2 (HMGA2) as the protein of interest and netropsin as the inhibitor of HMGA2–DNA interactions. With this method we successfully identified several inhibitors and an activator for HMGA2–DNA interactions from a collection of 29 …


Screening For Ampr-Specific Inhibitors To Combat P. Aeruginosa Infections, Kevin Morales Mar 2015

Screening For Ampr-Specific Inhibitors To Combat P. Aeruginosa Infections, Kevin Morales

Undergraduate Research at FIU (URFIU) Conference

Pseudomonas aeruginosa, a Gram-negative bacterium, an opportunistic pathogen that infects individuals suffering from reduced immunity or damaged tissue. The treatment of these infections has become a major problem due to its increasing antibiotic resistance. Many multi-drug resistant isolates of P. aeruginosa can thwart most antibiotic classes including ?- lactams, fluoroquinolones, and aminoglycosides. Its ability to combat ?-lactams is in part due to expression of AmpC, a major chromosomally encoded ?-lactamase. The expression of ampC is positively regulated by AmpR. Besides antibiotic resistance, AmpR is an important regulator of various factors that are required for establishing acute and chronic infections. Loss …


Conjugated Polymer Nanoparticles For Biological Labeling And Delivery, Eladio A. Mendez Mar 2015

Conjugated Polymer Nanoparticles For Biological Labeling And Delivery, Eladio A. Mendez

FIU Electronic Theses and Dissertations

Cancer remains one of the world’s most devastating diseases, with more than 10 million new cases every year. However, traditional treatments have proven insufficient for successful medical management of cancer due to the chemotherapeutics’ difficulty in achieving therapeutic concentrations at the target site, non-specific cytotoxicity to normal tissues, and limited systemic circulation lifetime. Although, a concerted effort has been placed in developing and successfully employing nanoparticle(NP)-based drug delivery vehicles successfully mitigate the physiochemical and pharmacological limitations of chemotherapeutics, work towards controlling the subcellular fate of the carrier, and ultimately its payload, has been limited. Because efficient therapeutic action requires drug …


Conformational Kinetics Study Of Mp-11 Using Tims-Ms And Molecular Dynamics, Christopher Harrilal, Jaroslava Miksovska, Emily R. Schenk Mar 2015

Conformational Kinetics Study Of Mp-11 Using Tims-Ms And Molecular Dynamics, Christopher Harrilal, Jaroslava Miksovska, Emily R. Schenk

Undergraduate Research at FIU (URFIU) Conference

In the present work, we studied the conformational kinetics of microperoxidase 11 (MP-11), a digest fragment of cytochrome C that contains 11 amino acids with a covalently attached heme group. In particular, a novel technique recently developed at FIU in collaboration with Bruker Daltonics Inc. combined with theoretical calculation was used for the characterization of MP- 11 conformational space [1-3]. Accurate ion-neutral collision cross sections were measured for all MP-11 generated charge states. Since MP-11 (like cytochrome C) undergoes conformational changes as a function of the solvent state, MP-11 ions were produced by electrospray ionization (ESI) in order to preserve …


Validation Of An Analytical Method For The Identification Of Smartwater Csi Forensic Marking Technology, Demi Moreda, Claudia Martinez Mar 2015

Validation Of An Analytical Method For The Identification Of Smartwater Csi Forensic Marking Technology, Demi Moreda, Claudia Martinez

Undergraduate Research at FIU (URFIU) Conference

SmartWater is a chemical taggant used as a crime deterrent. The chemical taggant is a colorless liquid that fluoresces yellow under ultra-violet (UV) light and contains distinctive, identifiable and traceable elemental composition. For instance, upon a break and entry scenario, the burglar is sprayed with a solution that has an elemental signature custom-made to a specific location. The residues of this taggant persist on skin and other objects and can be easily recovered for further analysis. The product has been effectively used in Europe as a crime deterrent and has been recently introduced in South Florida. In 2014, Fourt Lauderdale …