Open Access. Powered by Scholars. Published by Universities.®
Physical Sciences and Mathematics Commons™
Open Access. Powered by Scholars. Published by Universities.®
- Publication
- Publication Type
- File Type
Articles 1 - 8 of 8
Full-Text Articles in Physical Sciences and Mathematics
Partial Molecular Volumes Of Lipids And Cholesterol., Alexander Greenwood, Stephanie Tristram-Nagle, John Nagle
Partial Molecular Volumes Of Lipids And Cholesterol., Alexander Greenwood, Stephanie Tristram-Nagle, John Nagle
Prof. Stephanie Tristram-Nagle Ph.D.
Volumetric measurements are reported for fully hydrated lipid/cholesterol bilayer mixtures using the neutral flotation method. Apparent specific volume data were obtained with the lipids DOPC, POPC and DMPC at T=30 degrees Celsius, DPPC at 50 degrees Celsius, and brain sphingomyelin (BSM) at 45 and 24 degrees Celsius for mole fractions of cholesterol x from 0 to 0.5. Unlike previous cholesterol mixture studies, we converted our raw data to partial molecular volume V(L) of the lipid and V(C) of the cholesterol. The partial molecular volumes were constant for POPC and DOPC as x was varied, but had sharp breaks for the …
Structure Of Lipid Bilayers, John Nagle, Stephanie Tristram-Nagle
Structure Of Lipid Bilayers, John Nagle, Stephanie Tristram-Nagle
Prof. Stephanie Tristram-Nagle Ph.D.
The quantitative experimental uncertainty in the structure of fully hydrated, biologically relevant, fluid (L(alpha)) phase lipid bilayers has been too large to provide a firm base for applications or for comparison with simulations. Many structural methods are reviewed including modern liquid crystallography of lipid bilayers that deals with the fully developed undulation fluctuations that occur in the L(alpha) phase. These fluctuations degrade the higher order diffraction data in a way that, if unrecognized, leads to erroneous conclusions regarding bilayer structure. Diffraction measurements at high instrumental resolution provide a measure of these fluctuations. In addition to providing better structural determination, this …
Molecular Structures Of Fluid Phase Phosphatidylglycerol Bilayers As Determined By Small Angle Neutron And X-Ray Scattering., Jianjun Pan, Frederick Heberle, Stephanie Tristram-Nagle, Michelle Szymanski, Mary Koepfinger, John Katsaras, Norbert Kucerka
Molecular Structures Of Fluid Phase Phosphatidylglycerol Bilayers As Determined By Small Angle Neutron And X-Ray Scattering., Jianjun Pan, Frederick Heberle, Stephanie Tristram-Nagle, Michelle Szymanski, Mary Koepfinger, John Katsaras, Norbert Kucerka
Prof. Stephanie Tristram-Nagle Ph.D.
We have determined the molecular structures of commonly used phosphatidylglycerols (PGs) in the commonly accepted biologically relevant fluid phase. This was done by simultaneously analyzing small angle neutron and X-ray scattering data, with the constraint of measured lipid volumes. We report the temperature dependence of bilayer parameters obtained using the one-dimensional scattering density profile model - which was derived from molecular dynamics simulations - including the area per lipid, the overall bilayer thickness, as well as other intrabilayer parameters (e.g., hydrocarbon thickness). Lipid areas are found to be larger than their phosphatidylcholine (PC) counterparts, a result likely due to repulsive …
Orientation Of Tie-Lines In The Phase Diagram Of Dopc/Dppc/Cholesterol Model Biomembranes., Pradeep Uppamoochikkal, Stephanie Tristram-Nagle, John Nagle
Orientation Of Tie-Lines In The Phase Diagram Of Dopc/Dppc/Cholesterol Model Biomembranes., Pradeep Uppamoochikkal, Stephanie Tristram-Nagle, John Nagle
Prof. Stephanie Tristram-Nagle Ph.D.
We report the direction of tie-lines of coexisting phases in a ternary diagram of DOPC/DPPC/cholesterol lipid bilayers, which has been a system of interest in the discussion of biological rafts. For coexisting Ld and Lo phases, we find that the orientation angle α of the tie-lines increases as the cholesterol concentration increases and it also increases as temperature increases from T = 15 °C to T = 30 °C. Results at lower cholesterol concentrations support the existence of a different two-phase coexistence region of Ld and So phases and the existence of a three-phase region separating the two two-phase regions. …
Volumetric Stability Of Lipid Bilayers., Kelsey Hallinen, Stephanie Tristram-Nagle, John Nagle
Volumetric Stability Of Lipid Bilayers., Kelsey Hallinen, Stephanie Tristram-Nagle, John Nagle
Prof. Stephanie Tristram-Nagle Ph.D.
In agreement with recent reports, a commercial densimeter has yielded a gradual decrease in lipid molecular volume of DPPC multilamellar vesicle dispersions in the gel phase upon repeated thermal cycling between 10 °C and 50 °C. The considerable size of this decrease would have significant implications for the physical chemistry of biomembranes. In contrast, neutral buoyancy measurements performed with similar thermal cycling indicate no gradual change in lipid volume in the gel phase at 20 °C. Remixing the lipid in the densimeter shows that the apparent volume decrease is an artifact. We conclude that gel phase DPPC bilayers exist in …
Diffusive Electron Heat Flow And Temperature Variance Along Magnetic Field Lines, Michael Kushlan
Diffusive Electron Heat Flow And Temperature Variance Along Magnetic Field Lines, Michael Kushlan
Physics Capstone Projects
In this research we examine how electron heat moves along magnetic field lines and how this affects temperature variations in plasmas. Specifically we wrote FORTRAN code to solve the electron temperature equation numerically. We also solved the steady state electron temperature equation analytically using an integrating factor. We verified that the numerical and analytical solutions obtained the same result. Finally we calculated the standard deviation of temperature in our domain for the steady state. Gaussian legendre quadrature was used to integrate various functions. We represented our magnetic field and heat source with Fourier series. The sin and cosine coefficients for …
Drift Corrected Trends And Periodic Variations In Mipas Imk/Iaa Ozone Measurements, E. Eckert, T. Von Clarmann, M. Kiefer, G. P. Stiller, S. Lossow, N. Glatthor, D. A. Degenstein, L. Froidevaux, S. Godin-Beekmann, T. Leblanc, S. Mcdermid, M. Pastel, W. Steinbrcht, D.P.J. Swart, K. A. Walker, P. F. Bernath
Drift Corrected Trends And Periodic Variations In Mipas Imk/Iaa Ozone Measurements, E. Eckert, T. Von Clarmann, M. Kiefer, G. P. Stiller, S. Lossow, N. Glatthor, D. A. Degenstein, L. Froidevaux, S. Godin-Beekmann, T. Leblanc, S. Mcdermid, M. Pastel, W. Steinbrcht, D.P.J. Swart, K. A. Walker, P. F. Bernath
Chemistry & Biochemistry Faculty Publications
Drifts, trends and periodic variations were calculated from monthly zonally averaged ozone profiles. The ozone profiles were derived from level-1b data of the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) by means of the scientific level-2 processor run by the Karlsruhe Institute of Technology (KIT), Institute for Meteorology and Climate Research (IMK). All trend and drift analyses were performed using a multilinear parametric trend model which includes a linear term, several harmonics with period lengths from 3 to 24 months and the quasi-biennial oscillation (QBO). Drifts at 2-sigma significance level were mainly negative for ozone relative to Aura MLS and …
Validation Of Mipas Imk/Iaa V5r_O3_224 Ozone Profiles, A. Laeng, U. Grabowski, T. Von Clarmann, G. Stiller, N. Glatthor, M. Höpfner, S. Kellmann, M. Kiefer, A. Linden, S. Lossow, P. F. Bernath
Validation Of Mipas Imk/Iaa V5r_O3_224 Ozone Profiles, A. Laeng, U. Grabowski, T. Von Clarmann, G. Stiller, N. Glatthor, M. Höpfner, S. Kellmann, M. Kiefer, A. Linden, S. Lossow, P. F. Bernath
Chemistry & Biochemistry Faculty Publications
We present the results of an extensive validation program of the most recent version of ozone vertical profiles retrieved with the IMK/IAA (Institute for Meteorology and Climate Research/Instituto de Astrofisica de Andalucia) MIPAS (Michelson Interferometer for Passive Atmospheric Sounding) research level 2 processor from version 5 spectral level 1 data. The time period covered corresponds to the reduced spectral resolution period of the MIPAS instrument, i.e., January 2005-April 2012. The comparison with satellite instruments includes all post-2005 satellite limb and occultation sensors that have measured the vertical profiles of tropospheric and stratospheric ozone: ACE-FTS, GOMOS, HALOE, HIRDLS, MLS, OSIRIS, POAM, …