Physical Sciences and Mathematics Commons^™

Use Of International Hydrographic Organization Tidal Data For Improved Tidal Prediction, Songwei Qi

Dissertations and Theses

Tides are the rise and fall of water level caused by gravitational forces exerted by the sun, moon and earth. Understanding sea level variation and its impact currents is very important especially in coastal regions. With knowledge of the tide-generating force and boundary conditions, hydrodynamic models can be used to predict or model tides in coastal regions. However, these models are not sufficiently accurate, and in-situ tide gauge data may be used to improve them in coastal regions. The International Hydrographic Organization (IHO) tidal data bank consists of over 4000 tide gauge stations scattered all around the globe, most of …

Influence Of Tidal Cycles On Movements Of Atlantic Bottlenose Dolphins (Tursiops Truncatus) In South Carolina Coastal Environments, Lauren Albrittain

Honors Theses

When studying estuarine environments that are directly fed by the ocean tides, the impact of the changing tide is vital in studying the migration and travel behaviors of organisms within those environments. This study was aimed at determining the influence of the daily tidal currents on movement with or against the tides by Atlantic bottlenose dolphins (Tursiops truncatus). Data collection occurred from March to October 2012, at three study sites: the ACE River Basin National Wildlife Refuge, the Hilton Head estuary, and the Cape Romain National Wildlife Refuge. Photo identification transect surveys were conducted to observe resident Atlantic bottlenose dolphins …

Potential Changes To The Cubitt Creek System After Dredging, Hillary Sparagna

Honors Theses

Dredging is the process of removing sediments from beneath the water's surface to increase the depth of the area. Many times, dredging is used to deepen navigational channels for boats in inlets and bays, control river flow, and environmental remediation of contaminated sediments. Sustainable dredging is when the sediments that have been dredged are used to replenish beaches. This method saves money, minimizes ecological impact, saves capacity at deposit sites, and can be used for habitat restoration.

A Tangle Net Study On Relative Abundance And Habitat Preference Of Elasmobranchs In North Inlet Estuary, South Carolina, Moriah Heather Moore

Electronic Theses and Dissertations

Although habitat selection is relatively well studied in some elasmobranchs, no field or lab studies have focused on sediment preference, which is important to other benthic marine vertebrates. To determine the relative abundance and sediment preference of shallow water benthic elasmobranch inhabitants of North Inlet, SC, we employed 187 30 minute tangle net sets over two sediment types (mud and sand). The majority of our capture consisted of 41 Dasyatis sayi (tagged 37) and 31 Sphyrna tiburo (tagged 14). Although D. sayi had been recorded in North Inlet, previous studies found greater numbers of congeners D. americana and D. sabina. …

Polychaete Burrowing Behavior In Sand And Mud, Kevin Terrence Du Clos

Electronic Theses and Dissertations

Marine sediments are continually reworked by resident organisms that control the ecology, chemistry, and physical structure of these vast systems. For example, the creation of a burrow brings oxygenated water into contact with anoxic sediment, facilitating aerobic respiration and supporting a distinct population of bacteria and meiofauna. Collectively, the effects of infauna on sediments and pore waters are known as bioturbation. Studying the behavior organisms that live beneath the sediment surface (infauna) is crucial to understanding the effects of bioturbation. Infauna can be difficult to study, however, because much their activity cannot be directly observed. The purpose of this thesis …

Assessing Allelopathic Effects Of Alexandrium Fundyense On Thalassiosira Sp., Emily R. Lyczkowski

Electronic Theses and Dissertations

Production of allelopathic chemicals by the toxic dinoflagellate Alexandrium fundyense is one suggested mechanism by which this relatively slow grower outcompetes other phytoplankton, particularly diatoms. Despite well documented allelopathic potential of Alexandrium spp., the potency is variable. To further characterize allelopathic effects of A. fundyense on diatoms in the Gulf of Maine, I studied growth and nutrient acquisition by the chain-forming diatom Thalassiosira sp. in the presence and absence of allelochemicals. Thalassiosira cells, upon exposure to filtrate of A. fundyense cultures exhibited “bleaching” and both growth and nutrient utilization ceased for up to 4 days compared to controls. Results from …

Planning For Sea Level Rise In Portland, Maine Using Robust Decision Making As A Guide, Sadie Lloyd

Muskie School Capstones and Dissertations

This paper evaluates the potential for Robust Decision Making (RDM) to guide communities preparing for the impacts of climate change, using sea level rise planning in Portland, Maine as a case study. RDM is a problem solving process that considers multiple outcomes and an uncertain future, and focuses on decisions that provide benefits regardless of which future scenarios develop, allowing for the adjustment of decisions over time to accommodate changes in the future. The flexibility of RDM makes it an appropriate model for decision makers and stakeholders unsure how to address impacts of climate change, an issue complicated by numerous …

Circulation And Transport In Casco Bay, Maine, Gregory H. Sinnett

Electronic Theses and Dissertations

General circulation and transport exchange within Casco Bay, Maine occurs primarily through the three deepest channels separating the interior sections of the Bay from the outer Bay and adjacent Western Gulf of Maine shelf. Resource management in Casco Bay relies on an ability to predict and/or track oil spill trajectories, Red Tide events, nutrient plumes, pollution and other factors important to the estuarine environment. However, the exchange through these channels, the mean circulation and associated forcing mechanisms are not well understood. In this study, time series of current velocities, temperature, salinity and wind data collected during 2004 and 2005 are …

Spectroscopic Characterization Of Dissolved Organic Matter: Insights Into Composition, Photochemical Transformation And Carbon Cycling, John Robert Helms

Chemistry & Biochemistry Theses & Dissertations

This dissertation explores processes affecting the composition of dissolved organic matter (DOM) and how DOM composition changes in sunlit surface waters and in the dark interior ocean. Simulated solar irradiations were used to investigate the impact of photochemistry on terrestrial waters and deep ocean DOM. The photochemically mediated processes observed in Dismal Swamp samples included (i) light induced flocculation of up to 12% of the organic matter and 84% of the dissolved iron originally present; (ii) 74-88% mineralization of dissolved organic carbon (DOC) and 95-99% bleaching of chromophoric DOM (CDOM) during 110 days of irradiation; and (iii) nearly complete loss …

Assessing Movement Of Fish Through Spectral Analysis Of Otolith Life History Scans, Renee Reilly Hoover

OES Theses and Dissertations

The ability to accurately measure movement timing across environmental gradients is fundamental for testing hypotheses in marine ecology that deal with ingress, egress, and migration of fish. Timing and patterns of movement have been estimated using life-history scans of the chemical signatures encoded in fish otoliths (ear stones). I provide a quantitative approach to examining life history scan data using spectral analysis, which retrospectively measures the movement timing for individual fish. Sagittal otoliths from juvenile Atlantic croaker (Micropogonias undulates) and adult black sea bass (Centropristis striata) were sampled using laser ablation inductively coupled plasma mass spectrometry …

Population Structure And Connectivity Of An Important Pelagic Forage Fish In The Antarctic Ecosystem, Pleuragramma Antarcticum In Relation To Large Scale Circulation, Jason W. Ferguson

OES Theses and Dissertations

Ocean circulation has been identified as a major process controlling the distribution of biological material in marine systems. Large-scale transport by the Antarctic Circumpolar Current (ACC), the Ross and Weddell Gyres, and the Antarctic Coastal Current can promote spatially complex population structure in the Southern Ocean through advection. Antarctic silverfish (Pleuragramma antarcticum), a pelagic, neutrally buoyant notothenioid fish species, are distributed around the shelf systems of Antarctica and are considered an important species rivaling krill as prey for many birds, seals, whales, and other fish. We asked whether silverfish are distributed in independent, discrete populations along the shelf systems of …

Countries' Involvement In Whaling And The Impacts On Their Tourism Industries, Kaitlyn Hofeldt

Honors Theses

Since the expansion of whale watching as an industry, many countries have converted from whaling as a source of revenue. There are still some countries that partake in whaling and also conduct whale watching tours. The belief is that these two industries cannot coexist in a country and that whaling will have a negative impact on the whale watching sector and the tourism industry all together. A comparative analysis of scholarly articles was conducted alongside a survey to examine the impacts of whaling on the whale watching industries of certain countries. The results showed whaling and whale watching can coexist …

The Importance Of Isolated Wetlands As Habitat For Rare And Endangered Species In Comparison To Riparian Wetlands, Hillary K. Ballantine

Honors Theses

In this paper, I will review the literature on the factors contributing to the presence of rare or endangered species, the species found in each wetland type and what threatens them, and the views on how to and why we should conserve these habitats. I will also provide data analyses on the importance of isolated wetlands as habitats for rare and endangered species in comparison to riparian wetlands, and present my own views on the topic.

The Effects Of Significant Rainfall Events On Surface Dissolved Oxygen Concentrations Off The Coast Of Long Bay In South Carolina, Kelsey M. Couch

Honors Theses

Long Bay in South Carolina is currently facing recurrent hypoxic conditions ("South Carolina Coastal Hypoxia"). Therefore the purpose of this study was to examine the effect of eight significant rainfall events on the surface dissolved oxygen content of the bay. Differences in theoretical values of average monthly dissolved oxygen content and actual values of average monthly dissolved oxygen were observed. When analyzed, the data from the eight-month study showed no strong correlation between significant rainfall events and changes in surface dissolved oxygen content. Phytoplankton blooms, phytoplankton productivity and seasonal stratifications could be causing these fluctuations (Lomas et al. 2009).

Population Structure Of Tursiops Truncatus In North Inlet, South Carolina And Use Of Inlet As A Nursery Ground, Heather Estep

Honors Theses

Abundance, distribution and movement patterns of bottlenose dolphin populations are becoming more frequently studied along the Atlantic Coast from Virginia to Florida. One aspect of dolphin populations that has not been a focus of study is the use of nursery grounds by females with calves. Nursery grounds for bottlenose dolphin populations have been identified in Sarasota Bay, Florida and near Beaufort, North Carolina. This study analyzed data collected from September 1997 to June 2006 on focal follows and photo identification to determine if females were utilizing North Inlet, South Carolina as a nursery ground. There was no significant difference in …

Effects Of "Ultrasound" On Completion Of Cognitive Tasks In Relation To Dolphin Assisted Therapy, Carrie Wein

Honors Theses

In previous studies, it has been suggested that ultrasound may be the mechanism behind the success of Dolphin Assisted Therapy programs. This study was conducted to determine whether advertising these positive effects of dolphin produced ultrasound to prospective patients will elicit a placebo effect of improving cognitive function. A memory matching task was designed to measure cognitive task completion efficiency, and completion times were recorded in seconds. Participants were divided into two groups, Group A completing the task under normal, or control conditions first, and under the mock "ultrasound" condition second, while Group B received the mock "ultrasound" condition first …

Surface Mass Transfer In Large Eddy Simulation (Les) Of Langmuir Turbulence, Cigdem Akan

USF Tampa Graduate Theses and Dissertations

Over the past century the study of gas exchange rates between the atmosphere and the ocean has received increased attention because of concern about the fate of greenhouse gases such as CO₂ released into the atmosphere. Of interest is the oceanic uptake of CO₂ in shallow water coastal regions as biological productivity in these regions is on average about three times larger than in the open ocean. It is well-known that in the absence of breaking surface waves, the water side turbulence controls gas transfer of sparingly soluble gases such as CO₂ from the air to the …

The Modified Coastal Storm Impulse Parameter, Sayed Gholamreza Mahmoudpour

Civil & Environmental Engineering Theses & Dissertations

The correlation of the morphological changes to the coast and storm characteristics is among interests of coastal engineers. Better understandings of a storm's potential forces ultimately lead engineers to safer designs and minimize the damages. Therefore, a need to quantify the storm potential forces to a storm parameter is evident. The desired storm parameter is to consider all the relative physical factors and is to present realistic results that then can be proven by actual nature response.

The concept of Coastal Storm Impulse (COSI) parameter was first introduced by Basco and Klentzman (2006) and is based on the conservation of …

Modeling The Dispersion Of Eastern Oyster Larvae (Crassostrea Virginica) And Its Effects On The Movement Of Disease Resistant Genes In The Delaware Bay Estuary, Diego A. Narvaez

OES Theses and Dissertations

This study combines several models to address two primary research questions. How does the interaction of larval biology and environmental variability determine the spatial distribution of oyster larvae in Delaware Bay? What is the role of larval dispersion in the transference of disease-resistant genes? The particle-tracking module in the Regional Ocean Modeling System (ROMS) was converted into an Individual-Based model representing Eastern oyster larvae that has growth and vertical migration. Exchange of larvae between natural oyster reefs was estimated and used in an Individual-Based genetic model that simulates the genetic structure of eastern oysters. Particles were released from a number …

Interannual And Regional Differences In Krill And Fish Prey Quality Along The Western Antarctic Peninsula, Kate E. Ruck

Dissertations, Theses, and Masters Projects

Polar zooplankton and fish safeguard against the seasonality of food availability by using the summer months to build large reserves of lipids, which in turn are utilized to meet the metabolic demands of apex predators such as penguins, seals, and whales. A warming trend in the northern part of the western Antarctic Peninsula (WAP) has led to a decrease in perennial and summer sea ice, an increase in heat content over the shelf, and lower phytoplankton biomass, which could affect prey quality. We compared prey quality, including elemental (C, N) content and ratios, total, neutral, and polar lipid content, and …

Movements, Growth, And Mortality Of Chesapeake Bay Summer Flounder Based On Multiple Tagging Technologies, Mark J. Henderson

Dissertations, Theses, and Masters Projects

The research projects presented in this dissertation used multiple tagging technologies to examine the movements, growth, and mortality rates of summer flounder tagged and released in Chesapeake Bay. In the first two chapters, I used acoustic, archival, and conventional tags to examine the behavior of summer flounder on different spatial scales. Investigating the movement behavior of individuals on different scales is an important step towards understanding how large-scale distributions of a population are established. Based on the observed behaviors of summer flounder, I hypothesize that the movements of these fish are primarily related to foraging behavior while they are resident …

Optical Detection And Classification Of Phytoplankton Taxa Through Spectral Analysis, Daniel Tyler Sensi

USF Tampa Graduate Theses and Dissertations

Phytoplankton serve as the bottom of the marine food web and therefore play an essential role in marine ecosystems. On the other hand, coastal phytoplankton communities can adversely affect the marine ecosystem and humans. A variety of techniques have been developed to measure and study phytoplankton, including in situ methods (e.g., flow cytometry) and laboratory methods (e.g., microscopic taxonomy). These provide accurate measurements of phytoplankton taxa and concentrations, yet they are limited in space and time, and synoptic information is difficult to obtain with these techniques.

Optical remote sensing may provide complementary information for its synoptic nature, as demonstrated by …

On The Spatial And Temporal Variability Of Upwelling In The Southern Caribbean Sea And Its Influence On The Ecology Of Phytoplankton And Of The Spanish Sardine (Sardinella Aurita), Digna Tibisay Rueda-Roa

USF Tampa Graduate Theses and Dissertations

The Southern Caribbean Sea experiences a strong upwelling process along the coast from about 61°W to 75.5°W and 10-13°N. In this dissertation three aspects of this upwelling system are examined: (A) A mid-year secondary upwelling that was previously observed in the southeastern Caribbean Sea between June-July, when land based stations show a decrease in wind speed. The presence and effects of this upwelling along the whole southern Caribbean upwelling system were evaluated, as well as the relative forcing contribution of alongshore winds (Ekman Transport, ET) and wind-curl (Ekman Pumping, EP). (B) Stronger upwelling occurs in two particular regions, namely the …

Sea Surface Height: A Versatile Climate Variable For Investigations Of Decadal Change, Philip Robert Thompson

USF Tampa Graduate Theses and Dissertations

Decadal variations in climate are important, because the magnitude of sustained decadal change is often much larger than the often discussed background trends. Climate variability at interannual and longer periods is most often discussed in the context of climate modes defined by sea level pressure (SLP) and sea surface temperature (SST) patterns. However, SLP and SST are not capable descriptors of ocean dynamics. The approximately two decades of global sea surface height (SSH) measurements from satellite altimetry reveal substantial low-frequency redistributions of heat and salt in the ocean, which may or may not be related to defined climate modes. In …

Seed Burial In The Seagrass Zostera Marina: The Role Of Infauna, Natalia J. Blackburn

Dissertations, Theses, and Masters Projects

In terrestrial systems, seed burial is widely recognized as a vital process that influences small- and large-scale plant population patterns. Despite its demonstrated importance in terrestrial literature, very little is known about seed burial in seagrasses. Zostera marina is a perennial seagrass found in northern temperate oceans worldwide, and is the dominant seagrass found in the Chesapeake Bay. In terrestrial systems, seed burial is frequently mediated by soil-dwelling invertebrates. The goal of this work was to determine the role that benthic infauna play in the burial of Z. marina seeds by addressing the following questions: 1. Are seeds on sediments …

Developing An Unstructured Grid, Coupled Storm Surge, Wind Wave And Inundation Model For Super-Regional Applications, Yi-Cheng Teng

Dissertations, Theses, and Masters Projects

During extreme weather conditions such as hurricanes and nor'easters, both the currents and wind waves generated by the atmospheric forces are important. Although they may act and dominate on different temporal and spatial scales, their interactions and combined effects are without doubt significant. In this dissertation, a major effort has been made to couple an unstructured grid circulation model SELFE (semi-implicit, Eulerian-Lagrangian finite element model) and the WWM II (Wind Wave model II). Moreover, this new coupled model system can be executed in a parallel computational environment. After the coupled model was successfully built, the model was verified with ideal …

Patterns Of Population Structure And Historical Dispersal In Squaloid Sharks: A Species-Level Approach Using Molecular Markers, Ana Christina Pimenta Verissimo

Dissertations, Theses, and Masters Projects

Squaloids (Order Squaliformes) are a highle diverse group of mostly deepwater habitats (> 200 m). Many species are regularly caught in commercial fisheries worldwide but their low productivity and correspondingly low intrinsic rebound potentials make them particularly vulnerable to population depletion and overexploitation. of special concern to fisheries management and conservation efforts are the spiny dogfish Squalus acanthias, the leafscale gulper shark Centrophorus squamosus and the Portuguese dogfish Centroscymnus coelolepis. These taxa have recently been declared overfished in several parts of each species' distribution but management efforts have been made to recover the "stocks" without a good understanding of the …

Rogue Fishermen: Codfish, Atlantic Items, And The Isles Of Shoals, Megan Victor

Dissertations, Theses, and Masters Projects

No abstract provided.

The Role Of Benthic Nitrogen Fixation As A Source Of New Nitrogen To The New River Estuary, Nc, Meaghan L. Whitehead

Dissertations, Theses, and Masters Projects

Nitrogen (N) has been shown to limit primary production in many estuarine systems, including the New River Estuary (NRE), NC, a moderately eutrophied system with large areas of photic sediment. The NRE receives major inputs of allochthonous nutrients from agriculture and confined animal feeding operations as well as other sources. Autochthonous sources of N in the NRE include both remineralization and Nfixation. Whereas allochthonous sources are usually most important in winter/spring and during periods of high fresh water discharge, autochthonous sources are likely to become more important in summer. N-fixation, which can be performed by both autotrophic cyanobacteria and heterotrophic …

Distribution And Feeding Ecology Of Bathylagus Euryops (Teleostei: Microstomatidae) Along The Northern Mid-Atlantic Ridge From Iceland To The Azores, Christopher J. Sweetman

Dissertations, Theses, and Masters Projects

The northern Mid-Atlantic Ridge, from Iceland to the Azores (MAR), ranges in depth from 800 – 4500 m and extends over an area of 3.7 million km2. Recent evidence from MAR-ECO, a Census of Marine Life field project, reported increased abundance and biomass of deep-pelagic fishes below 1000 m on the MAR. Among the fishes sampled, Bathylagus euryops was found to be the biomass-dominant species and ranked third in total abundance. In this thesis, we characterize the distribution and feeding ecology of B. euryops as a function of physical, biological, and life history parameters along a mid-ocean ridge system. Multiple …