Physical Sciences and Mathematics Commons^™

Membrane Systems With Limited Parallelism, Bianca Daniela Popa

Doctoral Dissertations

Membrane computing is an emerging research field that belongs to the more general area of molecular computing, which deals with computational models inspired from bio-molecular processes. Membrane computing aims at defining models, called membrane systems or P systems, which abstract the functioning and structure of the cell. A membrane system consists of a hierarchical arrangement of membranes delimiting regions, which represent various compartments of a cell, and with each region containing bio-chemical elements of various types and having associated evolution rules, which represent bio-chemical processes taking place inside the cell.

This work is a continuation of the investigations aiming to …

Stochastic Propagation Modeling And Early Detection Of Malicious Mobile Code, Xin Xu

Doctoral Dissertations

Epidemic models are commonly used to model the propagation of malicious mobile code like a computer virus or a worm. In this dissertation, we introduce stochastic techniques to describe the propagation behavior of malicious mobile code. We propose a stochastic infection-immunization (INIM) model based on the standard Susceptible-Infected-Removed (SIR) epidemic model, and we get an explicit solution of this model using probability generating function (pgf.). Our experiments simulate the propagation of malicious mobile code with immunization. The simulation results match the theoretical results of the model, which indicates that it is reliable to use INIM model to predict the propagation …

A Novel Computational Framework For Fast, Distributed Computing And Knowledge Integration For Microarray Gene Expression Data Analysis, Prerna Sethi

Doctoral Dissertations

The healthcare burden and suffering due to life-threatening diseases such as cancer would be significantly reduced by the design and refinement of computational interpretation of micro-molecular data collected by bioinformaticians. Rapid technological advancements in the field of microarray analysis, an important component in the design of in-silico molecular medicine methods, have generated enormous amounts of such data, a trend that has been increasing exponentially over the last few years. However, the analysis and handling of these data has become one of the major bottlenecks in the utilization of the technology. The rate of collection of these data has far surpassed …