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Physical Sciences and Mathematics Commons

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Full-Text Articles in Physical Sciences and Mathematics

Interacting With Local And Remote Data Respositories Using The Stashr Package, Sandrah P. Eckel, Roger Peng Dec 2006

Interacting With Local And Remote Data Respositories Using The Stashr Package, Sandrah P. Eckel, Roger Peng

Johns Hopkins University, Dept. of Biostatistics Working Papers

The stashR package (a Set of Tools for Administering SHared Repositories) for R implements a simple key-value style database where character string keys are associated with data values. The key-value databases can be either stored locally on the user's computer or accessed remotely via the Internet. Methods specific to the stashR package allow users to share data repositories or access previously created remote data repositories. In particular, methods are available for the S4 classes localDB and remoteDB to insert, retrieve, or delete data from the database as well as to synchronize local copies of the data to the remote version …


Spatio-Temporal Analysis Of Areal Data And Discovery Of Neighborhood Relationships In Conditionally Autoregressive Models, Subharup Guha, Louise Ryan Nov 2006

Spatio-Temporal Analysis Of Areal Data And Discovery Of Neighborhood Relationships In Conditionally Autoregressive Models, Subharup Guha, Louise Ryan

Harvard University Biostatistics Working Paper Series

No abstract provided.


Bayesian Smoothing Of Irregularly-Spaced Data Using Fourier Basis Functions, Christopher J. Paciorek Aug 2006

Bayesian Smoothing Of Irregularly-Spaced Data Using Fourier Basis Functions, Christopher J. Paciorek

Harvard University Biostatistics Working Paper Series

No abstract provided.


Interacting With Data Using The Filehash Package For R, Roger Peng Jun 2006

Interacting With Data Using The Filehash Package For R, Roger Peng

Johns Hopkins University, Dept. of Biostatistics Working Papers

The filehash package for R implements a simple key-value style database where character string keys are associated with data values that are stored on the disk. A simple interface is provided for inserting, retrieving, and deleting data from the database. Utilities are provided that allow filehash databases to be treated much like environments and lists are already used in R. These utilities are provided to encourage interactive and exploratory analysis on large datasets. Three different file formats for representing the database are currently available and new formats can easily be incorporated by third parties for use in the filehash framework.


Posterior Simulation In The Generalized Linear Model With Semiparmetric Random Effects, Subharup Guha May 2006

Posterior Simulation In The Generalized Linear Model With Semiparmetric Random Effects, Subharup Guha

Harvard University Biostatistics Working Paper Series

Generalized linear mixed models with semiparametric random effects are useful in a wide variety of Bayesian applications. When the random effects arise from a mixture of Dirichlet process (MDP) model, normal base measures and Gibbs sampling procedures based on the Pólya urn scheme are often used to simulate posterior draws. These algorithms are applicable in the conjugate case when (for a normal base measure) the likelihood is normal. In the non-conjugate case, the algorithms proposed by MacEachern and Müller (1998) and Neal (2000) are often applied to generate posterior samples. Some common problems associated with simulation algorithms for non-conjugate MDP …