Physical Sciences and Mathematics Commons^™

Novel Approach For Non-Invasive Prediction Of Body Shape And Habitus, Emma Young

Electronic Theses and Dissertations

While marker-based motion capture remains the gold standard in measuring human movement, accuracy is influenced by soft-tissue artifacts, particularly for subjects with high body mass index (BMI) where markers are not placed close to the underlying bone. Obesity influences joint loads and motion patterns, and BMI may not be sufficient to capture the distribution of a subject’s weight or to differentiate differences between subjects. Subjects in need of a joint replacement are more likely to have mobility issues or pain, which prevents exercise. Obesity also increases the likelihood of needing a total joint replacement. Accurate movement data for subjects with …

Deep Hybrid Modeling Of Neuronal Dynamics Using Generative Adversarial Networks, Soheil Saghafi

Dissertations

Mechanistic modeling and machine learning methods are powerful techniques for approximating biological systems and making accurate predictions from data. However, when used in isolation these approaches suffer from distinct shortcomings: model and parameter uncertainty limit mechanistic modeling, whereas machine learning methods disregard the underlying biophysical mechanisms. This dissertation constructs Deep Hybrid Models that address these shortcomings by combining deep learning with mechanistic modeling. In particular, this dissertation uses Generative Adversarial Networks (GANs) to provide an inverse mapping of data to mechanistic models and identifies the distributions of mechanistic model parameters coherent to the data.

Chapter 1 provides background information on …

A Machine Learning Approach For Predicting Clinical Trial Patient Enrollment In Drug Development Portfolio Demand Planning, Ahmed Shoieb

Masters Theses

One of the biggest challenges the clinical research industry currently faces is the accurate forecasting of patient enrollment (namely if and when a clinical trial will achieve full enrollment), as the stochastic behavior of enrollment can significantly contribute to delays in the development of new drugs, increases in duration and costs of clinical trials, and the over- or under- estimation of clinical supply. This study proposes a Machine Learning model using a Fully Convolutional Network (FCN) that is trained on a dataset of 100,000 patient enrollment data points including patient age, patient gender, patient disease, investigational product, study phase, blinded …

Loss Scaling And Step Size In Deep Learning Optimizatio, Nora Alosily

Dissertations

Deep learning training consumes ever-increasing time and resources, and that is
due to the complexity of the model, the number of updates taken to reach good
results, and both the amount and dimensionality of the data. In this dissertation,
we will focus on making the process of training more efficient by focusing on the
step size to reduce the number of computations for parameters in each update.
We achieved our objective in two new ways: we use loss scaling as a proxy for
the learning rate, and we use learnable layer-wise optimizers. Although our work
is perhaps not the first …

Peer-To-Peer Energy Trading In Smart Residential Environment With User Behavioral Modeling, Ashutosh Timilsina

Theses and Dissertations--Computer Science

Electric power systems are transforming from a centralized unidirectional market to a decentralized open market. With this shift, the end-users have the possibility to actively participate in local energy exchanges, with or without the involvement of the main grid. Rapidly reducing prices for Renewable Energy Technologies (RETs), supported by their ease of installation and operation, with the facilitation of Electric Vehicles (EV) and Smart Grid (SG) technologies to make bidirectional flow of energy possible, has contributed to this changing landscape in the distribution side of the traditional power grid.

Trading energy among users in a decentralized fashion has been referred …

Low-Reynolds-Number Locomotion Via Reinforcement Learning, Yuexin Liu

Dissertations

This dissertation summarizes computational results from applying reinforcement learning and deep neural network to the designs of artificial microswimmers in the inertialess regime, where the viscous dissipation in the surrounding fluid environment dominates and the swimmer’s inertia is completely negligible. In particular, works in this dissertation consist of four interrelated studies of the design of microswimmers for different tasks: (1) a one-dimensional microswimmer in free-space that moves towards the target via translation, (2) a one-dimensional microswimmer in a periodic domain that rotates to reach the target, (3) a two-dimensional microswimmer that switches gaits to navigate to the designated targets in …

Design And Analysis Of Strategic Behavior In Networks, Sixie Yu

McKelvey School of Engineering Theses & Dissertations

Networks permeate every aspect of our social and professional life.A networked system with strategic individuals can represent a variety of real-world scenarios with socioeconomic origins. In such a system, the individuals' utilities are interdependent---one individual's decision influences the decisions of others and vice versa. In order to gain insights into the system, the highly complicated interactions necessitate some level of abstraction. To capture the otherwise complex interactions, I use a game theoretic model called Networked Public Goods (NPG) game. I develop a computational framework based on NPGs to understand strategic individuals' behavior in networked systems. The framework consists of three …

Model-Based Deep Learning For Computational Imaging, Xiaojian Xu

McKelvey School of Engineering Theses & Dissertations

This dissertation addresses model-based deep learning for computational imaging. The motivation of our work is driven by the increasing interests in the combination of imaging model, which provides data-consistency guarantees to the observed measurements, and deep learning, which provides advanced prior modeling driven by data. Following this idea, we develop multiple algorithms by integrating the classical model-based optimization and modern deep learning to enable efficient and reliable imaging. We demonstrate the performance of our algorithms by validating their performance on various imaging applications and providing rigorous theoretical analysis.

The dissertation evaluates and extends three general frameworks, plug-and-play priors (PnP), regularized …

Geometric Algorithms For Modeling Plant Roots From Images, Dan Zeng

McKelvey School of Engineering Theses & Dissertations

Roots, considered as the ”hidden half of the plant”, are essential to a plant’s health and pro- ductivity. Understanding root architecture has the potential to enhance efforts towards im- proving crop yield. In this dissertation we develop geometric approaches to non-destructively characterize the full architecture of the root system from 3D imaging while making com- putational advances in topological optimization. First, we develop a global optimization algorithm to remove topological noise, with applications in both root imaging and com- puter graphics. Second, we use our topology simplification algorithm, other methods from computer graphics, and customized algorithms to develop a high-throughput …

Abm Simulation Model Of A Pandemic For Optimizing Vaccination Strategy, Gibeom Park

Theses and Dissertations

This study presents a process-oriented hybrid model for individuals' immune responses and interactions involving vaccination to describe the trend of contagious disease and estimate the future societal cost. The model considers "recovery" as a non-absorbing state and incorporates various infection stage states including two symptomatic states. To model contagiousness to be consistent with the current pandemic and include that the spread of a disease depends on the mobility of people, we developed an Agent-Based Simulator that fitted to the particular model used in this study and can test various what-if scenarios. We improved the simulator considerably by appying data structures …

Development Of Software Tools For Efficient And Sustainable Process Development And Improvement, Jake P. Stengel

Theses and Dissertations

Infrastructure is a key component in the well-being of our society that leads to its growth, development, and productive operations. A well-built infrastructure allows the community to be more competitive and promotes economic advancement. In 2021, the ASCE (American Society of Civil Engineers) ranked the American infrastructure as substandard, with an overall grade of C-. The overall ranking suffers when key infrastructure categories are not maintained according to the needs of the population. Therefore, there is a need to consider alternative methods to improve our infrastructure and make it more sustainable to enhance the overall grade. One of the challenges …

Comparing Learned Representations Between Unpruned And Pruned Deep Convolutional Neural Networks, Parker Mitchell

Master's Theses

While deep neural networks have shown impressive performance in computer vision tasks, natural language processing, and other domains, the sizes and inference times of these models can often prevent them from being used on resource-constrained systems. Furthermore, as these networks grow larger in size and complexity, it can become even harder to understand the learned representations of the input data that these networks form through training. These issues of growing network size, increasing complexity and runtime, and ambiguity in the understanding of internal representations serve as guiding points for this work.

In this thesis, we create a neural network that …

Multi-Device Data Analysis For Fault Localization In Electrical Distribution Grids, Jacob D L Hunte

Electronic Thesis and Dissertation Repository

The work presented in this dissertation represents work which addresses some of the main challenges of fault localization methods in electrical distribution grids. The methods developed largely assume access to sophisticated data sources that may not be available and that any data sets recorded by devices are synchronized. These issues have created a barrier to the adoption of many solutions by industry. The goal of the research presented in this dissertation is to address these challenges through the development of three elements. These elements are a synchronization protocol, a fault localization technique, and a sensor placement algorithm.

The synchronization protocol …

Finding Optimal Cayley Map Embeddings Using Genetic Algorithms, Jacob Buckelew

Honors Program Theses

Genetic algorithms are a commonly used metaheuristic search method aimed at solving complex optimization problems in a variety of fields. These types of algorithms lend themselves to problems that can incorporate stochastic elements, which allows for a wider search across a search space. However, the nature of the genetic algorithm can often cause challenges regarding time-consumption. Although the genetic algorithm may be widely applicable to various domains, it is not guaranteed that the algorithm will outperform other traditional search methods in solving problems specific to particular domains. In this paper, we test the feasibility of genetic algorithms in solving a …

Dynamic Nonlinear Gaussian Model For Inferring A Graph Structure On Time Series, Abhinuv Uppal

CMC Senior Theses

In many applications of graph analytics, the optimal graph construction is not always straightforward. I propose a novel algorithm to dynamically infer a graph structure on multiple time series by first imposing a state evolution equation on the graph and deriving the necessary equations to convert it into a maximum likelihood optimization problem. The state evolution equation guarantees that edge weights contain predictive power by construction. After running experiments on simulated data, it appears the required optimization is likely non-convex and does not generally produce results significantly better than randomly tweaking parameters, so it is not feasible to use in …

Genetic Algorighm Representation Selection Impact On Binary Classification Problems, Stephen V. Maldonado

Honors Undergraduate Theses

In this thesis, we explore the impact of problem representation on the ability for the genetic algorithms (GA) to evolve a binary prediction model to predict whether a physical therapist is paid above or below the median amount from Medicare. We explore three different problem representations, the vector GA (VGA), the binary GA (BGA), and the proportional GA (PGA). We find that all three representations can produce models with high accuracy and low loss that are better than Scikit-Learn’s logistic regression model and that all three representations select the same features; however, the PGA representation tends to create lower weights …

Multi-Agent Pathfinding In Mixed Discrete-Continuous Time And Space, Thayne T. Walker

Electronic Theses and Dissertations

In the multi-agent pathfinding (MAPF) problem, agents must move from their current locations to their individual destinations while avoiding collisions. Ideally, agents move to their destinations as quickly and efficiently as possible. MAPF has many real-world applications such as navigation, warehouse automation, package delivery and games. Coordination of agents is necessary in order to avoid conflicts, however, it can be very computationally expensive to find mutually conflict-free paths for multiple agents – especially as the number of agents is increased. Existing state-ofthe- art algorithms have been focused on simplified problems on grids where agents have no shape or volume, and …

Design, Analysis, And Optimization Of Traffic Engineering For Software Defined Networks, Mohammed Ibrahim Salman

Browse all Theses and Dissertations

Network traffic has been growing exponentially due to the rapid development of applications and communications technologies. Conventional routing protocols, such as Open-Shortest Path First (OSPF), do not provide optimal routing and result in weak network resources. Optimal traffic engineering (TE) is not applicable in practice due to operational constraints such as limited memory on the forwarding devices and routes oscillation. Recently, a new way of centralized management of networks enabled by Software-Defined Networking (SDN) made it easy to apply most traffic engineering ideas in practice. \par Toward creating an applicable traffic engineering system, we created a TE simulator for experimenting …

Energy Planning Model Design For Forecasting The Final Energy Consumption Using Artificial Neural Networks, Haidy Eissa

Theses and Dissertations

“Energy Trilemma” has recently received an increasing concern among policy makers. The trilemma conceptual framework is based on three main dimensions: environmental sustainability, energy equity, and energy security. Energy security reflects a nation’s capability to meet current and future energy demand. Rational energy planning is thus a fundamental aspect to articulate energy policies. The energy system is huge and complex, accordingly in order to guarantee the availability of energy supply, it is necessary to implement strategies on the consumption side. Energy modeling is a tool that helps policy makers and researchers understand the fluctuations in the energy system. Over the …

Constructing Frameworks For Task-Optimized Visualizations, Ghulam Jilani Abdul Rahim Quadri

USF Tampa Graduate Theses and Dissertations

Visualization is crucial in today’s data-driven world to augment and enhance human understanding and decision-making. Effective visualizations must support accuracy in visual task performance and expressive data communication. Effective visualization design depends on the visual channels used, chart types, or visual tasks. However, design choices and visual judgment are co-related, and effectiveness is not one-dimensional, leading to a significant need to understand the intersection of these factors to create optimized visualizations. Hence, constructing frameworks that consider both design decisions and the task being performed enables optimizing visualization design to maximize efficacy. This dissertation describes experiments, techniques, and user studies to …

Continuous-Time And Complex Growth Transforms For Analog Computing And Optimization, Oindrila Chatterjee

McKelvey School of Engineering Theses & Dissertations

Analog computing is a promising and practical candidate for solving complex computational problems involving algebraic and differential equations. At the fundamental level, an analog computing framework can be viewed as a dynamical system that evolves following fundamental physical principles, like energy minimization, to solve a computing task. Additionally, conservation laws, such as conservation of charge, energy, or mass, provide a natural way to couple and constrain spatially separated variables. Taking a cue from these observations, in this dissertation, I have explored a novel dynamical system-based computing framework that exploits naturally occurring analog conservation constraints to solve a variety of optimization …

Designing Targeted Mobile Advertising Campaigns, Kimia Keshanian

USF Tampa Graduate Theses and Dissertations

With the proliferation of smart, handheld devices, there has been a multifold increase in the ability of firms to target and engage with customers through mobile advertising. Therefore, not surprisingly, mobile advertising campaigns have become an integral aspect of firms’ brand building activities, such as improving the awareness and overall visibility of firms' brands. In addition, retailers are increasingly using mobile advertising for targeted promotional activities that increase in-store visits and eventual sales conversions. However, in recent years, mobile or in general online advertising campaigns have been facing one major challenge and one major threat that can negatively impact the …

Can Parallel Gravitational Search Algorithm Effectively Choose Parameters For Photovoltaic Cell Current Voltage Characteristics?, Alan Kirkpatrick

Honors Projects

This study asks the question “Can parallel Gravitational Search Algorithm (GSA) effectively choose parameters for photovoltaic cell current voltage characteristics?” These parameters will be plugged into the Single Diode Model to create the IV curve. It will also investigate Particle Swarm Optimization (PSO) and a population based random search (PBRS) to see if GSA performs the search better and or more quickly than alternative algorithms

Optimal Communication Structures For Concurrent Computing, Andrii Berdnikov

Doctoral Dissertations

This research focuses on communicative solvers that run concurrently and exchange information to improve performance. This “team of solvers” enables individual algorithms to communicate information regarding their progress and intermediate solutions, and allows them to synchronize memory structures with more “successful” counterparts. The result is that fewer nodes spend computational resources on “struggling” processes. The research is focused on optimization of communication structures that maximize algorithmic efficiency using the theoretical framework of Markov chains. Existing research addressing communication between the cooperative solvers on parallel systems lacks generality: Most studies consider a limited number of communication topologies and strategies, while the …

Machine Learning Models For Deciphering Regulatory Mechanisms And Morphological Variations In Cancer, Saman Farahmand

Graduate Doctoral Dissertations

The exponential growth of multi-omics biological datasets is resulting in an emerging paradigm shift in fundamental biological research. In recent years, imaging and transcriptomics datasets are increasingly incorporated into biological studies, pushing biology further into the domain of data-intensive-sciences. New approaches and tools from statistics, computer science, and data engineering are profoundly influencing biological research. Harnessing this ever-growing deluge of multi-omics biological data requires the development of novel and creative computational approaches. In parallel, fundamental research in data sciences and Artificial Intelligence (AI) has advanced tremendously, allowing the scientific community to generate a massive amount of knowledge from data. Advances …

Deep Learning And Optimization In Visual Target Tracking, Mohammadreza Javanmardi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Visual tracking is the process of estimating states of a moving object in a dynamic frame sequence. It has been considered as one of the most paramount and challenging topics in computer vision. Although numerous tracking methods have been introduced, developing a robust algorithm that can handle different challenges still remains unsolved. In this dissertation, we introduce four different trackers and evaluate their performance in terms of tracking accuracy on challenging frame sequences. Each of these trackers aims to address the drawbacks of their peers. The first developed method is called a structured multi-task multi-view tracking (SMTMVT) method, which exploits …

Optimizing A Bank Of Kalman Filters For Navigation Integrity, Luis E. Sepulveda

Theses and Dissertations

Alternative navigation is an area of research which employs a variety of sensor technologies to provide a navigation solution in Global Navigation Satellite System degraded or denied environments. The Autonomy and Navigation Technology Center at the Air Force Institute of Technology has recently developed the Autonomous and Resilient Management of All-source Sensors (ARMAS) navigation framework which utilizes an array of Kalman Filters to provide a navigation solution resilient to sensor failures. The Kalman Filter array size increases exponentially as system sensors and detectable faults are scaled up, which in turn increases the computational power required to run ARMAS in areal-world …

Machine Learning Morphisms: A Framework For Designing And Analyzing Machine Learning Work Ows, Applied To Separability, Error Bounds, And 30-Day Hospital Readmissions, Eric Zenon Cawi

McKelvey School of Engineering Theses & Dissertations

A machine learning workflow is the sequence of tasks necessary to implement a machine learning application, including data collection, preprocessing, feature engineering, exploratory analysis, and model training/selection. In this dissertation we propose the Machine Learning Morphism (MLM) as a mathematical framework to describe the tasks in a workflow. The MLM is a tuple consisting of: Input Space, Output Space, Learning Morphism, Parameter Prior, Empirical Risk Function. This contains the information necessary to learn the parameters of the learning morphism, which represents a workflow task. In chapter 1, we give a short review of typical tasks present in a workflow, as …

Improving Energy Efficiency Through Compiler Optimizations, Jack Beckitt-Marshall

Honors Projects

Abstract--- Energy efficiency is becoming increasingly important for computation, especially in the context of the current climate crisis. The aim of this experiment was to see if the compiler could reduce energy usage without rewriting programs themselves. The experimental setup consisted of compiling programs using the Clang compiler using a set of compiler flags, and then measuring energy usage and execution time on an AMD Ryzen processor. Three experiments were performed: a random exploration of compiler flags, utilization of SIMD, as well as benchmarking real world applications. It was found that the compiler was able to reduce execution time, especially …

Scheduling Allocation And Inventory Replenishment Problems Under Uncertainty: Applications In Managing Electric Vehicle And Drone Battery Swap Stations, Amin Asadi

Graduate Theses and Dissertations

In this dissertation, motivated by electric vehicle (EV) and drone application growth, we propose novel optimization problems and solution techniques for managing the operations at EV and drone battery swap stations. In Chapter 2, we introduce a novel class of stochastic scheduling allocation and inventory replenishment problems (SAIRP), which determines the recharging, discharging, and replacement decisions at a swap station over time to maximize the expected total profit. We use Markov Decision Process (MDP) to model SAIRPs facing uncertain demands, varying costs, and battery degradation. Considering battery degradation is crucial as it relaxes the assumption that charging/discharging batteries do not …