Physical Sciences and Mathematics Commons^™

Semi-Automatic Simulation Initialization By Mining Structured And Unstructured Data Formats From Local And Web Data Sources, Olcay Sahin

Computational Modeling & Simulation Engineering Theses & Dissertations

Initialization is one of the most important processes for obtaining successful results from a simulation. However, initialization is a challenge when 1) a simulation requires hundreds or even thousands of input parameters or 2) re-initializing the simulation due to different initial conditions or runtime errors. These challenges lead to the modeler spending more time initializing a simulation and may lead to errors due to poor input data.

This thesis proposes two semi-automatic simulation initialization approaches that provide initialization using data mining from structured and unstructured data formats from local and web data sources. First, the System Initialization with Retrieval (SIR) …

Modeling Martian Planetary Entry Descent And Landing Using Monte Carlo Driven Response Surface Methodology, Narcrisha S. Norman

Mechanical & Aerospace Engineering Theses & Dissertations

Response surface methodology (RSM) is a statistical method that explores the relationships between several descriptive variables and one or more response variables. For over sixty years, among other areas, it has been utilized in quality engineering, process engineering, aircraft engineering, economics, chemical engineering, automotive engineering and design/technique optimization. In this dissertation, RSM is utilized to produce regression models that represent the planetary entry, descent and landing (EDL) process. A complete understanding of EDL process is an essential component of any planetary exploration. Research in this area is ongoing and confidence in the ability to explore known celestial bodies is growing. …

Fecal Indicator Bacteria In Knitting Mill Creek With A Comparison Of Methods Used To Enumerate E. Coli, Manju Nagarajan

OES Theses and Dissertations

This research seeks to evaluate the impact of an urban, multi-use neighborhood on the bacteriological quality of water in Knitting Mill Creek, a blind arm of the Lafayette River, a sub-estuary of the lower Chesapeake Bay. A principal objective was to determine the effects of rainfall, a surrogate for run-off, on water-column concentrations of fecal-indicator bacteria (FIB). I collected water samples weekly (September 2009-December 2010) and biweekly (January 2010-December 2011) at a storm-sewer outfall and a nearby marina and quantified their E. coli and enterococci concentrations using Colilert-18 and Enterolert, most-probable-number assays. In addition, I took monthly samples for these …

The Factors Behind A Successful Implementation Of Electronic Health Records Systems, Anjee Gorkhali

Engineering Management & Systems Engineering Theses & Dissertations

This research explores the role that budget for Information System (IS) and technical expertise of healthcare service provider staff play on the successful leap from a partial to exhaustive implementation of Electronic Health Records (EHR) Systems. Technical expertise in Information Systems might not be easily measurable directly, but there are a number of indicators that could be used as a proxy, such as: Information System (IS) Department Budget, number of IS staff and the extent of technical trainings provided by the IS department to the clinical staff. This research study hypothesizes that quality technical trainings conducted by an IS department …

Developments In The Global Energy Markets And Constructing The Future Of The Persian Gulf Security, Nihat Cengel

Graduate Program in International Studies Theses & Dissertations

This study analyses the global energy projections and regional dynamics in the Persian Gulf. It is shown that the future projections in the world energy markets signify the importance of cooperation between developed and developing countries. It is also suggested that connected to the global economic crises and the regional demand change in the energy market, there is a growing need for international support to the Persian Gulf security.

I argue that the Gulf Cooperation Council (GCC) could play a crucial role for eliminating political conflicts and maintaining the regional stability. As a result, collective arm transfer to the region, …

East, West, Or Center? Turkey's Stance Straddling Continents, Pipelines, And Interdependences, Mustafa Kemal Dagdelen

Graduate Program in International Studies Theses & Dissertations

This thesis concentrates on the international relations of Turkey by studying one of the significant parameters of the world affairs, the Energy Security issue, and Robert 0. Keohane and Joseph S. Nye's Complex Interdependence concept. The research is conducted through two case studies between Turkey and two different neighboring actors, Iran and the European Union. This thesis is a qualitative study with descriptive analyses on the literature of the interdependence and the energy security concepts. By revealing mutual dependences between Turkey, Iran, and the European Union, with different vulnerabilities, the results of this scholarly quest suggest that the interdependent nature …

Meta-Heuristics Analysis For Technologically Complex Programs: Understanding The Impact Of Total Constraints For Schedule, Quality And Cost, Henry Darrel Webb

Engineering Management & Systems Engineering Projects for D. Eng. Degree

Program management data associated with a technically complex radio frequency electronics base communication system has been collected and analyzed to identify heuristics which may be utilized in addition to existing processes and procedures to provide indicators that a program is trending to failure. Analysis of the collected data includes detailed schedule analysis, detailed earned value management analysis and defect analysis within the framework of a Firm Fixed Price (FFP) incentive fee contract.

This project develops heuristics and provides recommendations for analysis of complex project management efforts such as those discussed herein. The analysis of the effects of the constraints on …

Assessing Movement Of Fish Through Spectral Analysis Of Otolith Life History Scans, Renee Reilly Hoover

OES Theses and Dissertations

The ability to accurately measure movement timing across environmental gradients is fundamental for testing hypotheses in marine ecology that deal with ingress, egress, and migration of fish. Timing and patterns of movement have been estimated using life-history scans of the chemical signatures encoded in fish otoliths (ear stones). I provide a quantitative approach to examining life history scan data using spectral analysis, which retrospectively measures the movement timing for individual fish. Sagittal otoliths from juvenile Atlantic croaker (Micropogonias undulates) and adult black sea bass (Centropristis striata) were sampled using laser ablation inductively coupled plasma mass spectrometry …

Serious Game Design Principles: The Impact Of Game Design On Learning Outcomes, Michael W. Martin

Computational Modeling & Simulation Engineering Theses & Dissertations

This dissertation examines the research question "How do video game design principles affect learning outcomes in serious games?" This research first develops a theoretical foundation concerning the meaning of the terms "game" and "serious game". This conceptual clarification is broken down into analytic propositions, which state that games have participants, rules, goals and challenges, and synthetic propositions, which state that the games should be intrinsically compelling, provide meaningful choices, and be self encapsulated. Based on these synthetic propositions, three hypotheses were developed. The hypotheses are that games with an enhanced aesthetic presentation, more meaningful choices, or provide player competition will …

Modeling, Visualizing, And Understanding Complex Tectonic Structures On The Surface And In The Sub-Surface, Steven Wild

Physics Theses & Dissertations

Plate tectonics is a relatively new theory with many details of plate dynamics which remain to be worked out. Moving plates can interact by divergence, lateral sliding, convergence, or collision. At a convergent plate boundary, a lithospheric slab of oceanic crust and upper mantle is subducted at a trench and dips down under a magmatic arc — either oceanic or continental. Textbooks show a static view of convergent boundaries but plate dynamics require that subduction zones and magmatic arcs must migrate with time. Therefore I develop animated models to help convey this motion. Also, convergent plate boundaries cannot continue along …

Response Surface Optimization Of Electron Beam Freeform Fabrication Depositions Using Design Of Experiments, Patricia A. Quigley

Engineering Management & Systems Engineering Theses & Dissertations

The Electron Beam Freeform Fabrication (EBF³ ) System is a material depositing, layer additive technique that produces three dimensional (3D) parts out of a wide range of metals in high vacuum, using an electron beam and wire feedstock. Screening deposition trials on a titanium alloy, Ti-6Al-4V, at the National Aeronautics Space Administration (NASA) revealed selective vaporization of the aluminum content of linear prototypes when subjected to chemical analysis. In this study, the aluminum content, bead height and bead width output responses were analyzed from a systematic study of the effects that the interactions of the EBF³ processing parameters …

Multidentate Resorcinarene Surfactants For The Phase Transfer Of Metal Nanoparticles And Nanodiamonds: Applications In Catalysis And Diamond Film Growth, Vara Prasad Sheela

Chemistry & Biochemistry Theses & Dissertations

One main objective of the present work is to functionalize cuboctahedral platinum nanoparticles with various multidentate resorcinarene surfactants and study their influence in determining their catalytic activity. We hypothesized that catalytically active and recyclable catalysts can be achieved by incomplete yet strong passivation of the nanoparticle surfaces by using multidentate resorcinarene surfactants. We have developed phase transfer protocols for functionalizing cuboctahedral platinum nanoparticles with resorcinarene thiol or amine. Fluorescence assay confirmed that both these nanoparticles contained almost comparable unpassivated metal area. The activity of such phase transferred nanoparticles was tested in the catalytic hydrogenation of allyl alcohol. The conversion of …

A Statistical Model To Determine Multiple Binding Sites Of A Transcription Factor On Dna Using Chip-Seq Data, Rasika Jayatillake

Mathematics & Statistics Theses & Dissertations

Protein-DNA interaction is vital to many biological processes in cells such as cell division, embryo development and regulating gene expression. Chromatin Immunoprecipitation followed by massively parallel sequencing (ChIP-seq) is a new technology that can reveal protein binding sites in genome with superior accuracy. Although many methods have been proposed to find binding sites for ChIP-seq data, they can find only one binding site within a short region of the genome. In this study we introduce a statistical model to identify multiple binding sites of a transcription factor within a short region of the genome using the ChIP-seq data. Mapped sequence …

De Novo Protein Structure Modeling From Cryoem Data Through A Dynamic Programming Algorithm In The Secondary Structure Topology Graph, Kamal H. Al Nasr

Computer Science Theses & Dissertations

Proteins are the molecules carry out the vital functions and make more than the half of dry weight in every cell. Protein in nature folds into a unique and energetically favorable 3-Dimensional (3-D) structure which is critical and unique to its biological function. In contrast to other methods for protein structure determination, Electron Cryorricroscopy (CryoEM) is able to produce volumetric maps of proteins that are poorly soluble, large and hard to crystallize. Furthermore, it studies the proteins in their native environment. Unfortunately, the volumetric maps generated by current advances in CryoEM technique produces protein maps at medium resolution about (~5 …

Application Of Chebyshev Formalism To Identify Nonlinear Magnetic Field Components In Beam Transport System, Michael Spata

Physics Theses & Dissertations

An experiment was conducted at Jefferson Lab's Continuous Electron Beam Accelerator Facility to develop a beam-based technique for characterizing the extent of the nonlinearity of the magnetic fields of a beam transport system. Horizontally and vertically oriented pairs of air-core kicker magnets were simultaneously driven at two different frequencies to provide a time-dependent transverse modulation of the beam orbit relative to the unperturbed reference orbit. Fourier decomposition of the position data at eight different points along the beamline was then used to measure the amplitude of these frequencies. For a purely linear transport system one expects to find solely the …

The Influence Of Non-Equilibrium Pressure On Rotating Flows, Irfan Rashid Zardadkhan

Mechanical & Aerospace Engineering Theses & Dissertations

This study was undertaken to investigate the influence of pressure relaxation on steady, incompressible flows with strong streamline curvature. In the early part of this dissertation research, the significance of non-equilibrium pressure forces in controlling the structure of a steady, two dimensional axial vortex was demonstrated. In order to extend the study of pressure relaxation influences on more complex rotating flows, this dissertation has examined other rotating flow features that can be associated with hurricanes, tornadoes and dust devils. To model these flows, modified boundary layer equations were developed for a fluid column rotating near a solid plane including the …

Friend: A Cyber-Physical System For Traffic Flow Related Information Aggregation And Dissemination, Samy S. El-Tawab

Computer Science Theses & Dissertations

The major contribution of this thesis is to lay the theoretical foundations of FRIEND — A cyber-physical system for traffic Flow-Related Information aggrEgatioN and Dissemination. By integrating resources and capabilities at the nexus between the cyber and physical worlds, FRIEND will contribute to aggregating traffic flow data collected by the huge fleet of vehicles on our roads into a comprehensive, near real-time synopsis of traffic flow conditions. We anticipate providing drivers with a meaningful, color-coded, at-a-glance view of flow conditions ahead, alerting them to congested traffic.

FRIEND can be used to provide accurate information about traffic flow and can be …

Visualizing Digital Collections At Archive-It, Kalpesh Padia

Computer Science Theses & Dissertations

Archive-It, a subscription service from the Internet Archive, allows users to create,maintain, and view digital collections of web resources. The current interface of Archive-It is largely text-based, supporting drill-down navigation using lists of URIs.While this interface provides good searching capabilities, it is not efficient for browsing. In the absence of keywords, a user has to spend large amount of time trying to locate a web page of interest. In order to provide a better visual experience to the user, we have studied the underlying characteristics of Archive-It collections and implemented six different visualizations (treemap, time cloud, bubble chart, image plot, …

Spectroscopic Characterization Of Dissolved Organic Matter: Insights Into Composition, Photochemical Transformation And Carbon Cycling, John Robert Helms

Chemistry & Biochemistry Theses & Dissertations

This dissertation explores processes affecting the composition of dissolved organic matter (DOM) and how DOM composition changes in sunlit surface waters and in the dark interior ocean. Simulated solar irradiations were used to investigate the impact of photochemistry on terrestrial waters and deep ocean DOM. The photochemically mediated processes observed in Dismal Swamp samples included (i) light induced flocculation of up to 12% of the organic matter and 84% of the dissolved iron originally present; (ii) 74-88% mineralization of dissolved organic carbon (DOC) and 95-99% bleaching of chromophoric DOM (CDOM) during 110 days of irradiation; and (iii) nearly complete loss …

Incorporating Memory And Learning Mechanisms Into Meta-Raps, Arif Arin

Engineering Management & Systems Engineering Theses & Dissertations

Due to the rapid increase of dimensions and complexity of real life problems, it has become more difficult to find optimal solutions using only exact mathematical methods. The need to find near-optimal solutions in an acceptable amount of time is a challenge when developing more sophisticated approaches. A proper answer to this challenge can be through the implementation of metaheuristic approaches. However, a more powerful answer might be reached by incorporating intelligence into metaheuristics.

Meta-RaPS (Metaheuristic for Randomized Priority Search) is a metaheuristic that creates high quality solutions for discrete optimization problems. It is proposed that incorporating memory and learning …

An Extensible Framework For Creating Personal Archives Of Web Resources Requiring Authentication, Matthew Ryan Kelly

Computer Science Theses & Dissertations

The key factors for the success of the World Wide Web are its large size and the lack of a centralized control over its contents. In recent years, many advances have been made in preserving web content but much of this content (namely, social media content) was not archived, or still to this day is not being archived,for various reasons. Tools built to accomplish this frequently break because of the dynamic structure of social media websites. Because many social media websites exhibit a commonality in hierarchy of the content, it would be worthwhile to setup a means to reference this …

Identification Of Persistent Long Range Interactions In GA95 And GB95 Through Thermal Unfolding Simulations, Milen Redai Tesfamariam

Chemistry & Biochemistry Theses & Dissertations

For over five decades, different experiments have been performed to research how proteins attain their native three dimensional structures. However, the folding problem continues to be a puzzle in modern science. The design of two proteins that have maximal sequence identity but different folds and functions is one method that is being used to study the relationship between protein structure and amino acid sequence. In particular, mutant proteins of Streptococcus protein G, G_A and G_B, have 95% sequence identity and a 3a helix fold and β4/a fold, respectively. Molecular dynamics simulations of G_A95 …

Population Structure And Connectivity Of An Important Pelagic Forage Fish In The Antarctic Ecosystem, Pleuragramma Antarcticum In Relation To Large Scale Circulation, Jason W. Ferguson

OES Theses and Dissertations

Ocean circulation has been identified as a major process controlling the distribution of biological material in marine systems. Large-scale transport by the Antarctic Circumpolar Current (ACC), the Ross and Weddell Gyres, and the Antarctic Coastal Current can promote spatially complex population structure in the Southern Ocean through advection. Antarctic silverfish (Pleuragramma antarcticum), a pelagic, neutrally buoyant notothenioid fish species, are distributed around the shelf systems of Antarctica and are considered an important species rivaling krill as prey for many birds, seals, whales, and other fish. We asked whether silverfish are distributed in independent, discrete populations along the shelf systems of …

Gravity Anomalies Along The East Scotia Ridge: Constraining The Relative Importance Of Magmatic And Tectonic Controls On Crustal Accretion, Briton Lee Nicholson

OES Theses and Dissertations

Similar to regions such as the Lau Basin and the Caribbean Sea, the eastern Scotia Sea is a geologically complex area that involves multiple plate boundary types. This study uses bathymetry and gravity data to infer upper mantle geodynamics in the eastern Scotia Sea region. Beneath this region is an intermediate-rate back-arc spreading center known as the East Scotia Ridge (ESR) that forms the boundary between the Scotia and Sandwich plates. To the east of the ESR are the South Sandwich island arc and the South Sandwich Trench. The ESR is a relatively young feature, with spreading estimated to have …

The Modified Coastal Storm Impulse Parameter, Sayed Gholamreza Mahmoudpour

Civil & Environmental Engineering Theses & Dissertations

The correlation of the morphological changes to the coast and storm characteristics is among interests of coastal engineers. Better understandings of a storm's potential forces ultimately lead engineers to safer designs and minimize the damages. Therefore, a need to quantify the storm potential forces to a storm parameter is evident. The desired storm parameter is to consider all the relative physical factors and is to present realistic results that then can be proven by actual nature response.

The concept of Coastal Storm Impulse (COSI) parameter was first introduced by Basco and Klentzman (2006) and is based on the conservation of …

Exploring The Components Of Dynamic Modeling Techniques, Charles Daniel Turnitsa

Computational Modeling & Simulation Engineering Theses & Dissertations

Upon defining the terms modeling and simulation, it becomes apparent that there is a wide variety of different models, using different techniques, appropriate for different levels of representation for any one system to be modeled. Selecting an appropriate conceptual modeling technique from those available is an open question for the practitioner. Existing methods for describing techniques do not capture enough information about the expressive potential of those techniques such that an appropriate selection decision can be made. A formal method to describe conceptual modeling techniques that captures enough about the technique to distinguish it from others is identified as a …

Design Of In Vivo Assays For Study Of Transport, Biocompatibility And Toxicity Of Nanoparticles, Kerry Jean Lee

Theses and Dissertations in Biomedical Sciences

This dissertation focuses on the design of new in vivo assays for study of transport, biocompatibility and toxicity of nanoparticles (NPs) in zebrafish embryos. We synthesized and purified spherical silver (Ag) NPs with diameters, ranging from 12 to 95 nm, that are stable (non-aggregated) in egg-water media. We developed new imaging approaches to characterize the sizes of single Ag NPs in zebrafish embryos at nanometer resolution by measuring their size-dependent plasmonic spectra and scattering intensity using dark-field optical microscopy and spectroscopy (DFOMS). We used single Ag NPs because they exhibit the high quantum yield (QY) of Rayleigh scattering and resist …

Image-Guided Robotic Dental Implantation With Natural-Root-Formed Implants, Xiaoyan Sun

Electrical & Computer Engineering Theses & Dissertations

Dental implantation is now recognized as the standard of the care for tooth replacement. Although many studies show high short term survival rates greater than 95%, long term studies (> 5 years) have shown success rates as low as 41.9%. Reasons affecting the long term success rates might include surgical factors such as limited accuracy of implant placement, lack of spacing controls, and overheating during the placement.

In this dissertation, a comprehensive solution for improving the outcome of current dental implantation is presented, which includes computer-aided preoperative planning for better visualization of patient-specific information and automated robotic site-preparation for superior …

An Efficient Boosted Classifier Tree-Based Feature Point Tracking System For Facial Expression Analysis, Adam Redd Livingston

Electrical & Computer Engineering Theses & Dissertations

The study of facial movement and expression has been a prominent area of research since the early work of Charles Darwin. The Facial Action Coding System (FACS), developed by Paul Ekman, introduced the first universal method of coding and measuring facial movement. Human-Computer Interaction seeks to make human interaction with computer systems more effective, easier, safer, and more seamless. Facial expression recognition can be broken down into three distinctive subsections: Facial Feature Localization, Facial Action Recognition, and Facial Expression Classification. The first and most important stage in any facial expression analysis system is the localization of key facial features. Localization …

A Vision-Based Automatic Safe Landing-Site Detection System, Yufei Shen

Electrical & Computer Engineering Theses & Dissertations

An automatic safe landing-site detection system is proposed for aircraft emergency landing, based on visible information acquired by aircraft-mounted cameras. Emergency landing is an unplanned event in response to emergency situations. If, as is unfortunately usually the case, there is no airstrip or airfield that can be reached by the un-powered aircraft, a crash landing or ditching has to be carried out. Identifying a safe landing-site is critical to the survival of passengers and crew. Conventionally, the pilot chooses the landing-site visually by looking at the terrain through the cockpit. The success of this vital decision greatly depends on the …