Physical Sciences and Mathematics Commons^™

Automated Tree Mortality Detection Using Ubiquitously Available Public Data, Michael T. Huggins

Master's Theses

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic …

The Biological, Physical And Chemical Response Of The Little Creek Watershed To The 2020 Czu Lighting Complex Fire, Natalie Fontana

Master's Theses

This post-fire study was conducted to characterize and observe fire induced changes in physical habitat parameters, water-quality conditions and macroinvertebrate assemblages in the Little Creek watershed, a tributary to Scotts Creek located in Cal Poly’s Swanton Pacific Ranch in Davenport, California. Pre-fire data was collected by a Cal Poly student, John Hardy, for his 2017 thesis. Post-burn bioassessment surveys for this study were repeated at four of the same study sites used by Hardy to provide comparisons to the California Stream Condition Index via a modified version of the State of California’s Surface Water Ambient Monitoring Program protocol. Macroinvertebrates were …

The Tidal Prism, Viable Eelgrass Habitat, And The Effects Of Sea Level Rise In Morro Bay, Kaden A. Caliendo

Master's Theses

The tidal prism, or the volume of water exchanged from the sea to an estuary from mean low to mean high tide, influences system hydrodynamics and ecological functioning. Since 1884, the tidal prism in Morro Bay, California has been estimated to be decreasing over time due to sedimentation from upstream practices. What is the current tidal prism in Morro Bay and how will that change with sea level rise? How will eelgrass respond to rising sea levels?

For this study, inexpensive tidal gauges were deployed at four locations in Morro Bay from March to August 2023 to measure spatially varying …

Annotation Of Non-Model Species’ Genomes, Taiya Jarva

Master's Theses

The innovations in high throughput sequencing technologies in recent decades has allowed unprecedented examination and characterization of the genetic make-up of both model and non-model species, which has led to a surge in the use of genomics in fields which were previously considered unfeasible. These advances have greatly expanded the realm of possibilities in the fields of ecology and conservation. It is now possible to the identification of large cohorts of genetic markers, including single nucleotide polymorphisms (SNPs) and larger structural variants, as well as signatures of selection and local adaptation. Markers can be used to identify species, define population …

Rattus Norvegicus As A Biological Detector Of Clandestine Remains And The Use Of Ultrasonic Vocalizations As A Locating Mechanism, Gabrielle M. Johnston

Master's Theses

In investigations, locating missing persons and clandestine remains are imperative. One way that first responder and police agencies can search for the remains is by using cadaver dogs as biological detectors. Cadaver dogs are typically used due to their olfactory sensitivity and ability to detect low concentrations of volatile organic compounds produced by biological remains. Cadaver dogs are typically chosen for their stamina, agility, and olfactory sensitivity. However, what is not taken into account often is the size of the animal and the expense of maintaining and training the animal. Cadaver dogs are typically large breeds that cannot fit in …

Trace Dna Detection Using Diamond Dye: A Recovery Technique To Yield More Dna, Leah Davis

Master's Theses

This study aspires to find a new screening approach to trace DNA recovery techniques to yield a higher quantity of trace DNA from larger items of evidence. It takes the path of visualizing trace DNA on items of evidence with potential DNA so analysts can swab a more localized area rather than attempting to recover trace DNA through the general swabbing technique currently used for trace DNA recovery. The first and second parts consisted of observing trace DNA interaction with Diamond Dye on porous and non-porous surfaces.

The third part involved applying the Diamond Dye solution by spraying it onto …

Benthic Habitat Mapping Of Mountain Top Bank Within The Northern Gulf Of Mexico Through Integrated Geophysical And Visual Data Analysis, Bethany Pertain

Master's Theses

Mesophotic coral ecosystems (MCEs) are among the seafloor ecosystems that have been poorly studied throughout the world’s oceans, but they are a vital and diverse ecosystem that should be prioritized for future mapping and ecological studies. Priority should be given to them because they possess natural, social, and economic values, and face a variety of threats, all of which, if not better understood will result in the loss of this unique ecosystem. Insights into these ecosystems, among other deep-sea environments, are lacking due to difficulty accessing them, inherent lag between data collection by an autonomous system and observation by a …

Quantifying Bromocarbon Emissions From Seaweed Aquaculture In California, Jessica C. Metter

Master's Theses

Feeding ruminant livestock seaweed rich in bromoform (CHBr3) is an emerging strategy to reduce methane emissions from the livestock sector to meet climate targets. Consequently, there is a strong interest in farming bromoform rich seaweeds (e.g., Asparagopsis taxiformis) on a large scale which may impact the atmospheric inventory of bromine and in return induce catalytic ozone destruction. However, to date, only three studies have measured bromoform emission rates from Asparagopsis seaweeds which vary by order of magnitude. To fill this gap, the most comprehensive data set of bromocarbon emissions from A. taxiformis, a leading candidate for enteric methane reduction in …

Effects Of Pier Shading On Salt Marsh Plants In Mississippi, Daniel Taylor

Master's Theses

Saltmarshes are important environments that are valuable to both humans and wildlife. As saltmarshes are under threat from erosion, sea level rise, and human development, efforts should be made to conserve them. The vegetation that occupies these environments are vital to the continued preservation of saltmarshes. This study focuses on one potential threat, the effect that pier shading has on prominent saltmarsh plants of Mississippi, Sporobolus alterniflorus and Juncus roemarianus. Sample piers were selected in the three coastal counties of Mississippi and visited at two time periods (2006 and 2021). I focused on the use of irradiance measurements at …

Constructing Planetary Citizens Through Ecopedagogy In U.S. Social Studies Standards, Madeline Anne Rainey

Master's Theses

The world is in the age of the Anthropocene, where humans are impacting the environment to disastrous effects. The capitalist economy, promoting neoliberal policies of mass consumption, has exacerbated the world's environmental deterioration and social inequity. The rights and responsibilities people hold have been rapidly changing with the fourth industrial revolution. Globalization and Information and Communications Technology (ICT) have further expanded notions of citizenship. While there have been numerous attempts to bring the environment into schools, it has not emphasized what this crisis deserves. Ecopedagogy, as a critical theory, explicitly examines the interplay between environmental and social problems and challenges …

Upland Migration Of Coastal Marshes As A Response To Sea Level Rise And Fire Management: Past, Present, And Predicted, Devin Jen

Master's Theses

Coastal marshes are one of the most productive and intensively used ecosystems in the world. However, they are under threat due to natural and anthropogenic stressors, such as sea level rise (SLR). SLR can cause marshes to drown, converting them to open water. Marshes can respond to SLR through landward migration when suitable habitat is available. My research focuses on the landward migration pattern and mechanisms. I evaluated the historical land cover changes at the Grand Bay National Estuarine Research Reserve and the Pascagoula River delta over two-time intervals since 1955 and focused on the forest-marsh dynamics. I found that …

Tropical Cyclone Storm Surge Detection In Slash Pine Radial Growth Along The Northern Gulf Of Mexico Coastline, Alyssa C. Crowell

Master's Theses

My thesis examines the ecological impact of tropical cyclone (TCs) storm surge on coastal slash pine (Pinus elliottii var. elliottii Engelm) communities along the Gulf of Mexico in the southern United States (U.S.). Previous research has shown slash pine radial growth trends can be examined to identify long and short-term growth changes associated with TC passage, providing insight into overall stand health and resiliency through time. However, this previous research encompasses just one site in Mississippi. My thesis expands the spatial footprint of TC-surge impact on slash pine radial growth with the addition of three new sites.

I examined …

Effects Of Experimental Scale On The Adsorption Of Two Pharmaceutical Drugs Detected In Municipal Wastewater Effluent, Michael Moore

Master's Theses

Pharmaceutical drugs are being produced and consumed in increasing quantities every year and are poorly treated by conventional wastewater treatment processes, leading to increasing detection of such compounds in surface water, groundwater, and municipal drinking water. Soil aquifer treatment (SAT) is a promising method for treating these emerging compounds through combined adsorption and degradation of target compounds in soil. This thesis examines the consistency of results from typical studies like adsorption isotherms and soil columns utilized in analysis of SAT performance, across varying experimental scales. The adsorption behavior of two pharmaceuticals was investigated as a function of experimental scale and …

A Comparison Of Natural, Living, And Hardened Shorelines Ability To Prevent Coastal Erosion And Maintain A Healthy Ecosystem, Gabrielle Spellmann

Master's Theses

It is important to find a suitable method to protect the U.S. Gulf Coast shoreline, since its’ low elevation and the Loop current make it vulnerable to sea level rise. I focused on two manmade methods, hardened, and living shorelines, of coastal protection for when the natural marsh suffers excess erosion rates. Living shorelines are a suite of shoreline conservation and restoration techniques that usually involve some sort of hardened structure that dampens wave energy so that the native vegetation behind it can take root and stabilize the shoreline. This study looked at six different sites, all containing a natural, …

Fire Effects In Montane Meadows, Rosie Deak

Master's Theses

The impact of forest fires on downstream meadow communities across California is of great ecological interest, as meadows are an important source of biodiversity in this region. Over a century of fire suppression has led to increased forest stand densities, which in turn has resulted in less water availability due to increased transpiration of densely growing trees. This potentially has left less available water for downstream plant communities in meadows. If true, then high mortality wildfires in surrounding forest are predicted to lead to an increase in available downstream moisture where obligate and facultative-wetland taxa increase and dry-adapted upland taxa …

Climate Adaptation And Water Conservation Decision-Making In Paso Robles, California Vineyards, Christopher R. Klier

Master's Theses

This paper examines vineyard perceptions and adoption of climate change adaptation and water conservation measures in the Paso Robles American Viticultural Area (AVA). A survey was distributed to all 220 vineyards and vineyard management companies that operate in the AVA, with a 53.64% response rate. The objective of the survey was to determine vineyard manager and owner attitudes towards climate change and adaptation, as well as their perceptions of how these threats would impact their operation. A second objective was to document the current level of water conservation and climate adaptation while identifying the barriers and opportunities for further adoption …

Polycyclic Aromatic Hydrocarbons And The Microbiomes Of Two Benthic Species, Samantha Ells

Master's Theses

The presence of oil has been shown to affect the microbiomes of the water column, sediments, and organisms, both by altering the diversity and the composition of those microbial communities. If the microbiome is altered it may no longer provide benefits to its host organism, impacting its ability to survive. Thus, it is important to understand the effects of large-scale contamination events including the Deepwater Horizon oil spill. This study set out to examine the effects of oil exposure on the microbiome of two benthic species, southern flounder (Paralichthys lethostigma) and eastern oysters (Crassostrea virginica) to further understand the effects …

A System Dynamics Model Of Soil Carbon Stock And Flows In Grasslands Under Climate And Grazing Scenarios., Deirdre Sommerlad-Rogers

Master's Theses

Carbon sequestration is paramount to reducing climate change. Grasslands, representing 40% of all terrestrial area, can serve as a primary sequestration location if optimal management strategies can be realized. This study used system dynamics modeling to examine the temporal dynamics of carbon stocks and flows in response to grass species composition, grazing intensity, and temperature and precipitation changes at the landscape level. While there are other biogeochemical models in existence, they are either meant to model large areas, including globally, or are meant to be at a farm level and have limited plot sizes, limiting the options for rangeland managers …

Soarnet, Deep Learning Thermal Detection For Free Flight, Jake T. Tallman

Master's Theses

Thermals are regions of rising hot air formed on the ground through the warming of the surface by the sun. Thermals are commonly used by birds and glider pilots to extend flight duration, increase cross-country distance, and conserve energy. This kind of powerless flight using natural sources of lift is called soaring. Once a thermal is encountered, the pilot flies in circles to keep within the thermal, so gaining altitude before flying off to the next thermal and towards the destination. A single thermal can net a pilot thousands of feet of elevation gain, however estimating thermal locations is not …

Evaluating Marsh Restoration Success Using Structural And Trophic Metrics On Deer Island, Ms, Emelia Marshall

Master's Theses

Coastal marshes in the northern Gulf of Mexico provide essential habitat for various consumer species, however, land loss has severely degraded marsh habitat in this region. Few studies have examined restored black needlerush (Juncus roemerianus) marshes, such as those found in Mississippi (MS), and how they affect faunal inhabitants.

Restoration of Juncus-dominated marshes on Deer Island, MS sought to reestablish ecological functions with the intention of supporting natural consumer assemblages. To test this, quadrat and minnow trap sampling were used to compare invertebrate and nekton abundance, species richness, and diversity of two restored marshes (5+ yrs and …

Application Of Machine Learning Techniques To Forecast Harmful Algal Blooms In Gulf Of Mexico, Bala Tripura Sundari Yerrapothu

Master's Theses

The Harmful Algal Blooms (HABs) forecast is crucial for the mitigation of health hazards and to inform actions for the protection of ecosystems and fisheries in the Gulf of Mexico (GoM). For the sake of simplicity of our application we assume ocean color satellite imagery from the National Oceanic and Atmospheric Administration as a proxy for HABs.

In this study we use a deep neural network trained on the 2-Dimensional time series proxy data to provide a forecast of the HABs’ manifestations in the GoM.Our approach analyzes between both spatial and temporal features simultaneously. In addition, the network also helps …

A Karst Feature Prediction Model For Prince Of Wales Island, Alaska Based On High Resolution Lidar Imagery, Alexander Lyles

Master's Theses

Investigation into surface karst formation is significant to hazard prediction, hydrogeologic drainage, and land management. Southeast Alaska contains over 600,000 acres of mapped carbonate bedrock, and some of the fastest recorded karst dissolution in the world. The objectives of this study are to develop and compare multiple semi-automated models to map and delineate karst features from bare-earth LiDAR imagery using ArcGIS Desktop 10.7, and to apply a preliminary geostatistical analysis of sinkhole morphometric parameters to highlight potential spatial patterns of karst evolution on Prince of Wales Island, Alaska. A semi-automated approach of mapping karst features provides a dataset that minimizes …

Policy Analysis Of Emissions Cap And Trade: The United State And The European Union, Drew Bealby

Master's Theses

Effects of climate change are appearing each day therefore proactive steps need to be made to reduce these effects. The National Aeronautics and Space Administration (NASA) notes that humans producing greenhouse gases (GHGs) such as carbon dioxide (CO₂), methane, and nitrous oxide are the main reason the Earth’s overall temperature is rising (NASA 2019). A policy analysis was done on the European Union Emissions Trading Scheme (EU ETS) along with comparisons to the United States’ emissions policies that are in place currently. The European Union (E.U.) itself is both an economic and political union of 27 countries in …

An Investigation Into Historical And Contemporary Breeding Occurrence Of The Ferruginous Hawk In Kansas, Erica Clark

Master's Theses

The Ferruginous Hawk (Buteo regalis) is the largest Buteo species occurring in grasslands, nesting along bluffs, buttes and isolated trees. In Kansas, the Ferruginous Hawk is listed as a Species of Greatest Conservation Need, Tier II. A previous study on Ferruginous Hawks nesting in Kansas during the years of 1979 to 1987, with sporadic visits from the 1990s to 2000, revealed that the most productive nesting territories were inaccessible to predators, placed on rocky ledges and the surrounding landscape was over 50% rangeland. I revisited 82 of the 111 historic nest territories in the summers of 2019 and …

Eelgrass (Zostera Marina) Population Decline In Morro Bay, Ca: A Meta-Analysis Of Herbicide Application In San Luis Obispo County And Morro Bay Watershed, Tyler King Sinnott

Master's Theses

The endemic eelgrass (Zostera marina) community of Morro Bay Estuary, located on the central coast of California, has experienced an estimated decline of 95% in occupied area (reduction of 344 acres to 20 acres) from 2008 to 2017 for reasons that are not yet definitively clear. One possible driver of degradation that has yet to be investigated is the role of herbicides from agricultural fields in the watershed that feeds into the estuary. Thus, the primary research goal of this project was to better understand temporal and spatial trends of herbicide use within the context of San Luis …

Phantom Ocean, Real Impact: Natural Surf Sound Experiments Alter Foraging Activity And Habitat Use Across Taxa, Ryan N. Wardle

Master's Theses

A growing body of research focuses on how background sounds shape and alter critical elements of animals’ lives, such as foraging behavior, habitat use, and ecological interactions (Bradbury & Vehrencamp, 2011; Barber et al., 2010; Kight & Swaddle, 2011; Shannon et al., 2016). Much of this research has centered on the effects of anthropogenic noise (Dominoni et al., 2020; Francis & Barber, 2013; Ortega, 2012; Swaddle et al., 2015), but recent studies have also revealed that natural sound sources can influence animal behavior (Davidson et al., 2017; Le et al., 2019). Natural sounds, such as crashing surf, can create conditions …

Sensory Stressors Impact Species Responses Across Local And Continental Scales, Ashley A. Wilson

Master's Theses

Pervasive growth in industrialization and advances in technology now exposes much of the world to anthropogenic night light and noise (ANLN), which pose a global environmental challenge in terrestrial environments. An estimated one-tenth of the planet’s land area experiences artificial light at night — and that rises to 23% if skyglow is included. Moreover, anthropogenic noise is associated with urban development and transportation networks, as the ecological impact of roads alone is estimated to affect one-fifth of the total land cover of the United States and is increasing in space and intensity. Existing research involving impacts of light or noise …

Determinants Of The Carbon Footprint Of German Swimmers 2020., Ann-Marie Muehlbauer

Master's Theses

The current climate situation is placing our planet and future generations at risk, which demonstrates the urgency to combat climate change and conduct research to support this effort. Calculating the carbon footprint of active sport participation represents an important opportunity to conduct additional research. This study examined the environmental attitudes and practices of swim club members in Germany. The study had three goals: First, to calculate the total and partial carbon footprint of German swimmers; second, to understand how sport organizations induce participants to engage in pro-environmental behavior; and third, to analyze various factors associated with carbon footprint, such as …

Host Plant Resistance In Strawberries To Anthracnose And Colonization Of Crown And Root Tissue By Verticillium Dahliae And Macrophomina Phaseolina, Omar A. Gonzalez-Benitez

Master's Theses

Strawberries are considered an important crop in California where in 2018 it was in the top 5 valued fruit and vegetable commodities valued at $2.84 billion accounting for 88% of the total U.S. production. Strawberry production can be severely impacted by soilborne pathogens that can affect strawberry roots, crowns and leaves which can result in plant mortality. As much as 50 to 60% mortality can occur in one field. Pathogens responsible for such losses include Colletotrichum acutatum (syn.C. nymphaeae), Macrophomina phaseolina and Verticillium dahliae. With the phaseout of methyl bromide, host resistance and an understanding of host-pathogen interactions …

Sustainable Wastewater Treatment In The American South, Caroline Miles

Master's Theses

Aging infrastructure and changing social and environmental conditions are two factors that are currently pushing wastewater treatment towards more sustainable methods. This thesis investigates what sustainable treatment technologies are being used in the American South through a focused sample of six cities across the region: Austin, Texas; Fayetteville, Arkansas; Hattiesburg, Mississippi; Memphis, Tennessee; Ocean Springs, Mississippi; and Tuscaloosa, Alabama. The study assesses the types of sustainable treatment technology utilized at each facility, the perspectives of wastewater professionals about the technology, and the economic and environmental sustainability of each facility. Data was collected through direct observations on tours of the facilities, …