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Full-Text Articles in Physical Sciences and Mathematics
Entity-Driven Fact-Aware Abstractive Summarization Of Biomedical Literature, Amanuel Alambo, Tanvi Banerjee, Krishnaprasad Thirunarayan, Michael Raymer
Entity-Driven Fact-Aware Abstractive Summarization Of Biomedical Literature, Amanuel Alambo, Tanvi Banerjee, Krishnaprasad Thirunarayan, Michael Raymer
Computer Science and Engineering Faculty Publications
As part of the large number of scientific articles being published every year, the publication rate of biomedical literature has been increasing. Consequently, there has been considerable effort to harness and summarize the massive amount of biomedical research articles. While transformer-based encoder-decoder models in a vanilla source document-to-summary setting have been extensively studied for abstractive summarization in different domains, their major limitations continue to be entity hallucination (a phenomenon where generated summaries constitute entities not related to or present in source article(s)) and factual inconsistency. This problem is exacerbated in a biomedical setting where named entities and their semantics (which …
Clustering Of Pain Dynamics In Sickle Cell Disease From Sparse, Uneven Samples, Gary K. Nave Jr, Swati Padhee, Amanuel Alambo, Tanvi Banerjee, Nirmish Shah, Daniel M. Abrams
Clustering Of Pain Dynamics In Sickle Cell Disease From Sparse, Uneven Samples, Gary K. Nave Jr, Swati Padhee, Amanuel Alambo, Tanvi Banerjee, Nirmish Shah, Daniel M. Abrams
Computer Science and Engineering Faculty Publications
Irregularly sampled time series data are common in a variety of fields. Many typical methods for drawing insight from data fail in this case. Here we attempt to generalize methods for clustering trajectories to irregularly and sparsely sampled data. We first construct synthetic data sets, then propose and assess four methods of data alignment to allow for application of spectral clustering. We also repeat the same process for real data drawn from medical records of patients with sickle cell disease -- patients whose subjective experiences of pain were tracked for several months via a mobile app. We find that different …
Leveraging Natural Language Processing To Mine Issues On Twitter During The Covid-19 Pandemic, Ankita Agarwal, Preetham Salehundam, Swati Padhee, William Romine, Tanvi Wright State University - Main Campus
Leveraging Natural Language Processing To Mine Issues On Twitter During The Covid-19 Pandemic, Ankita Agarwal, Preetham Salehundam, Swati Padhee, William Romine, Tanvi Wright State University - Main Campus
Computer Science and Engineering Faculty Publications
The recent global outbreak of the coronavirus disease (COVID-19) has spread to all corners of the globe. The international travel ban, panic buying, and the need for self-quarantine are among the many other social challenges brought about in this new era. Twitter platforms have been used in various public health studies to identify public opinion about an event at the local and global scale. To understand the public concerns and responses to the pandemic, a system that can leverage machine learning techniques to filter out irrelevant tweets and identify the important topics of discussion on social media platforms like Twitter …
Topic-Centric Unsupervised Multi-Document Summarization Of Scientific And News Articles, Amanuel Alambo, Cori Lohstroh, Erik Madaus, Swati Padhee, Brandy Foster, Tanvi Banerjee, Krishnaprasad Thirunarayan, Michael Raymer
Topic-Centric Unsupervised Multi-Document Summarization Of Scientific And News Articles, Amanuel Alambo, Cori Lohstroh, Erik Madaus, Swati Padhee, Brandy Foster, Tanvi Banerjee, Krishnaprasad Thirunarayan, Michael Raymer
Computer Science and Engineering Faculty Publications
Recent advances in natural language processing have enabled automation of a wide range of tasks, including machine translation, named entity recognition, and sentiment analysis. Automated summarization of documents, or groups of documents, however, has remained elusive, with many efforts limited to extraction of keywords, key phrases, or key sentences. Accurate abstractive summarization has yet to be achieved due to the inherent difficulty of the problem, and limited availability of training data. In this paper, we propose a topic-centric unsupervised multi-document summarization framework to generate extractive and abstractive summaries for groups of scientific articles across 20 Fields of Study (FoS) in …
Covid-19 And Mental Health/Substance Use Disorders On Reddit: A Longitudinal Study, Amanuel Alambo, Swati Padhee, Tanvi Banerjee, Krishnaprasad Thirunarayan
Covid-19 And Mental Health/Substance Use Disorders On Reddit: A Longitudinal Study, Amanuel Alambo, Swati Padhee, Tanvi Banerjee, Krishnaprasad Thirunarayan
Computer Science and Engineering Faculty Publications
COVID-19 pandemic has adversely and disproportionately impacted people suffering from mental health issues and substance use problems. This has been exacerbated by social isolation during the pandemic and the social stigma associated with mental health and substance use disorders, making people reluctant to share their struggles and seek help. Due to the anonymity and privacy they provide, social media emerged as a convenient medium for people to share their experiences about their day to day struggles. Reddit is a well-recognized social media platform that provides focused and structured forums called subreddits, that users subscribe to and discuss their experiences with …
Predicting Early Indicators Of Cognitive Decline From Verbal Utterances, Swati Padhee, Anurag Illendula, Megan Sadler, Valerie L. Shalin, Tanvi Banerjee, Krishnaprasad Thirunarayan, William Romine
Predicting Early Indicators Of Cognitive Decline From Verbal Utterances, Swati Padhee, Anurag Illendula, Megan Sadler, Valerie L. Shalin, Tanvi Banerjee, Krishnaprasad Thirunarayan, William Romine
Computer Science and Engineering Faculty Publications
Dementia is a group of irreversible, chronic, and progressive neurodegenerative disorders resulting in impaired memory, communication, and thought processes. In recent years, clinical research advances in brain aging have focused on the earliest clinically detectable stage of incipient dementia, commonly known as mild cognitive impairment (MCI). Currently, these disorders are diagnosed using a manual analysis of neuropsychological examinations. We measure the feasibility of using the linguistic characteristics of verbal utterances elicited during neuropsychological exams of elderly subjects to distinguish between elderly control groups, people with MCI, people diagnosed with possible Alzheimer's disease (AD), and probable AD. We investigated the performance …
Semi-Supervised Approach To Monitoring Clinical Depressive Symptoms In Social Media, Amir Hossein Yazdavar, Hussein S. Al-Olimat, Monireh Ebrahimi, Goonmeet Bajaj, Tanvi Banerjee, Krishnaprasad Thirunarayan, Jyotishman Pathak, Amit Sheth
Semi-Supervised Approach To Monitoring Clinical Depressive Symptoms In Social Media, Amir Hossein Yazdavar, Hussein S. Al-Olimat, Monireh Ebrahimi, Goonmeet Bajaj, Tanvi Banerjee, Krishnaprasad Thirunarayan, Jyotishman Pathak, Amit Sheth
Computer Science and Engineering Faculty Publications
With the rise of social media, millions of people are routinely expressing their moods, feelings, and daily struggles with mental health issues on social media platforms like Twitter. Unlike traditional observational cohort studies conducted through questionnaires and self-reported surveys, we explore the reliable detection of clinical depression from tweets obtained unobtrusively. Based on the analysis of tweets crawled from users with self-reported depressive symptoms in their Twitter profiles, we demonstrate the potential for detecting clinical depression symptoms which emulate the PHQ-9 questionnaire clinicians use today. Our study uses a semi-supervised statistical model to evaluate how the duration of these symptoms …