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Full-Text Articles in Physical Sciences and Mathematics
Overcoming Uncertainties In Molecular Visualization, Thomas Wischgoll
Overcoming Uncertainties In Molecular Visualization, Thomas Wischgoll
Computer Science and Engineering Faculty Publications
Uncertainties are difficult if not impossible to avoid. Capturing data from the analog world almost always results in some form of uncertainty. The amount of uncertainty depends on the method of measurement and its accuracy. When visualizing data that has some associated uncertainty, it is essential to properly process and convey such uncertainty and especially the amount of uncertainty keeping in mind that additional processing steps can amplify the uncertainty. There are various sources of uncertainty, such as numerical limitations or limitations of the capture device. However, there are other sources of uncertainty. Some of these uncertainties stem from model …
Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow
Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow
Computer Science and Engineering Faculty Publications
Biologists doing high-throughput high-content cellular analysis are generally not computer scientists or high performance computing (HPC) experts, and they want their workflow to support their science without having to be. We describe a new HPC enabled data analytics workflow with a web interface, HPC pipeline for analysis, and both traditional and new analytics tools to help them transition from a single workstation mode of operation to power HPC users. This allows the processing of multiple plates over a short period of time to ensure timely query and analysis to match potential countermeasures to individual responses.