Physical Sciences and Mathematics Commons^™

Determining The Biochemical Mechanisms And Binding Activities Of A Type Iv-A Crispr-Cas Ding Helicase, Matt Armbrust

Fall Student Research Symposium 2021

CRISPR-Cas systems are adaptive prokaryotic immune systems that enable host cells to defend against attack from foreign nucleic acids such as phage infections or plasmids. CRISPR-Cas systems are diverse and encompass 2 classes, 6 types, and 33 subtypes. The Type IV-A CRISPR-Cas system from Pseudomonas aeruginosa strain 83 is composed of five different genes (csf1, csf2, csf3, cas6, and dinG). Type IV-A systems are poorly understood, and currently there is little research detailing their biological and biochemical mechanism of immunity. CasDinG, an ancillary protein within the Type IV-A system, is required for an immune response in vivo. However, the role …

Measuring Irregularity Via Approximate Entropy: How Does Perceived Human Instability Affect One's Own Stability?, Madi Braunersrither

Fall Student Research Symposium 2021

In a study performed at Utah State University, participants were prompted to evaluate the stability of pictured human postures while standing on a force plate. The force plate was used to collect the center of pressure of the subjects by recording measurements in the vertical and horizontal directions. The way these factors fluctuate over time and the irregularity in this fluctuation, specifically, can give insight into the subject’s postural stability. Rather than working with summary statistics such as means and variances of fitting parameters of a distribution as commonly done in statistics, we want to measure irregularity through analyzing the …

Climate Change Impacts On Atmospheric Ammonia And Implications For Human Health, Casey Olson, Connor Snow, Bridger Jorgensen

Fall Student Research Symposium 2021

According to national data Cache Valley has the highest concentrations of atmospheric ammonia in the nation. This study aims to answer the questions of whether climate variables and events such as precipitation, averaged winds, geopotential height, and teleconnections can be used to predict the behavior of pollutants and how human biology is potentially affected. Data from the Utah Climate Center shows that the 3rd yearly quartile has the highest levels of airborne ammonia due to the high levels of fertilizer use and livestock emissions in the farming industry in Cache Valley. After data analysis, there seems to be a connection …

Explicit Synchronized Solitary Waves For Some Models For The Interaction Of Long And Short Waves In Dispersive Media., Bruce Brewer

Fall Student Research Symposium 2021

Four systems have recently been proposed for the study of the interaction of long and short waves in dispersive media. This poster establishes the synchronized solitary wave solutions for one of these systems.

Creating Transparent And Accessible Methods For Approximating The Composite Strength Of Concrete Sandwich Wall Panels, Ruth Taylor

Fall Student Research Symposium 2021

Background: The method of designing partially composite sandwich wall panels (SWPs) relies strongly on the use of percent of composite action. Calculating these values proves to be a complex and virtually inaccessible process for practicing engineers, resulting in the reliance on proprietary software or connector-system manufacturers for the necessary values. We simulated percent composite action data, including several relevant variables, to examine the relationship and determine if simple and accessible methods of calculation could be created. Methods: Code from collaborating engineers used to calculate percent composite action with the Iterative Sandwich Beam Theory (ISBT) method was translated into R, a …

Art As An Educator, Kylie Hansen

Fall Student Research Symposium 2021

When looking at art, eyes are often drawn to the foreground of the canvas, which can leave out many details and not tell the whole story a painting has to offer. The process of analyzing and looking deeper into works of art would be common in a perfect world; its lessons can be universal. Everyone should study art because it increases skills that can be used for many things. Art can reframe views of the world as well as condition the mind to look past quick judgments. Art teaches one to slow down and analyze situations before acting and may …

Understanding How Changes In Precipitation Intensity Will Affect Vegetation In The Western U.S., Cristina Chirvasa

Fall Student Research Symposium 2021

Precipitation events are becoming more intense as the atmosphere warms, but it remains unclear how precipitation intensification will affect plant growth in arid and semiarid ecosystems. There is conflicting evidence suggesting that larger precipitation events may either increase or decrease plant growth. Here, we report the growth responses of herbaceous and woody plants to experimental manipulations of precipitation intensity in a cold, semi-arid ecosystem in Utah, USA. In this experiment, precipitation was collected and redeposited as fewer, larger events with total annual precipitation kept constant across treatments. Results from the first two growing seasons revealed that more intense events ‘pushed’ …

Scattering Of Light From Periodic Conducting Nanostructures, Wesley Mills

Fall Student Research Symposium 2021

Light scattered from periodic structures generates numerous fascinating phenomena, from diffraction patterns to the black patches on some butterfly wings. The simple scalar wave formulation based on Huygens principle can account for many diffraction and radiation patterns in the far field. However, when the structure dimensions are smaller than the wavelength, light polarization and structure details become important, and the vector formulation based on Maxwell's equations is necessary. I will present an analytic calculation and a numerical simulation on light scattering from two-dimensional conducting grids to model the reflectance from butterfly wings and broadband absorption structures made from carbon nanotube …

Equivalence: A Covariantly Constant Problem In General Relativity, Jaren Hobbs

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

In studying the space-time structures described by Einstein’s theory of general relativity, it is often useful to identify particular properties referred to as geometrical invariants. These are attributes of the space-times which do not change regardless of the underlying coordinate systems used to study them. This project is part of a larger effort to catalogue space-times studied in general relativity. Specifically, computational software was used to identify structures known as covariantly constant vector fields.

Gps-Denied Navigation Using Synthetic Aperture Radar Images And Neural Networks, Teresa White

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Unmanned aerial vehicles (UAV) often rely on GPS for navigation. GPS signals, however, are very low in power and easily jammed or otherwise disrupted. This paper presents a method for determining the navigation errors present at the beginning of a GPS-denied period utilizing data from a synthetic aperture radar (SAR) system. This is accomplished by comparing an online-generated SAR image with a reference image obtained a priori. The distortions relative to the reference image are learned and exploited with a convolutional neural network to recover the initial navigational errors, which can be used to recover the true flight trajectory throughout …

Achieving A Sequenced, Relational Query Language With Log-Segmented Timestamps, M. A. Manazir Ahsan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In a relational temporal database, typically each row of each table has a period timestamp to indicate the lifetime of that row. In order to evaluate a query in a temporal database, sequenced semantics comes into play. The semantics stipulates that the query must be evaluated simultaneously in each time instant using the data rows available at that point of time. Existing researches have proposed changes in the query evaluation engine to achieve sequenced semantics. In this paper we show a way to support sequenced semantics without modifying the query engine. We propose a noble construction log-segmented label to represent …

Valley Bottom Inundation Patterns In Beaver-Modified Streams: A Potential Proxy For Hydrologic Inefficiency, Karen Bartelt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

For centuries river management and land use actions in North America have caused widespread stream degradation where water now flows downstream with artificially high efficiency. When present, beaver dams slow the flow of water and decrease the efficiency of water conveyance through the landscape. These effects are often to the benefit of the function of natural physical processes and ecology of the stream. The benefits provided by beaver dams have been well studied at small scales, but the methods that these studies rely on are often expensive and time consuming and consequently not feasible to deploy at larger spatial scales …

The Internal Charge Evolution Of Multilayered Materials Undergoing Mono-Energetic Electron Bombardment, Gregory Wilson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The charging of multilayer materials as related to the charging of spacecraft is one of the primary concerns related to activities in the space environment. To understand how multilayer materials undergoing electron bombardment charge, an in-depth study of energy-dependent material properties must be undertaken. These properties include the electron penetration depth, secondary electron emission, charge transport and electrostatic discharge. By using energy dependent models of these properties, along with the geometry of the system, multilayer models can be developed to predict the time evolution of the internal charge distribution. Using these models, the net surface potential and the measurement of …

Characterizing Relational Values To Inform Message-Framing At The Boa Ogoi Historical Site, Cole G. Stocker

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In an increasingly polarized political climate–particularly in the U.S.– environmental issues such as climate change and its effects on the environment have become hot-button partisan talking points resulting in further division. This has led to research on ways to communicate science which does not further inflame political tensions, but rather reinforces and validates the audience’s values. Science communication research provides the foundation for my case study, which focuses on characterizing the environmental values and worldviews of land managers residing and working near the Boa Ogoi Historical Site in southern Idaho. The Northwest Band of Shoshone Nation (NWBSN) is in the …

Tractor Connections For Killing Tensors And Their Generalizations, Benjamin D. Shaw

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

We create new symbolic software tools for the analysis of Killing tensors. Central to our work is the construction of the tractor connection defined on the tractor bundle, which allows one to obtain information about the space of Killing tensors without solving the Killing equations–an approach termed the tractor approach. We give a new application of the tractor approach which allows one to more easily check explicitly for linear independence of a given set of Killing tensors. We develop software to implement such methods in the case of rank 2 Killing tensors; similarly, we develop software to implement analogous methods …

Intelligent Traffic Management: From Practical Stochastic Path Planning To Reinforcement Learning Based City-Wide Traffic Optimization, Kamilia Ahmadi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This research focuses on intelligent traffic management including stochastic path planning and city scale traffic optimization. Stochastic path planning focuses on finding paths when edge weights are not fixed and change depending on the time of day/week. Then we focus on minimizing the running time of the overall procedure at query time utilizing precomputation and approximation. The city graph is partitioned into smaller groups of nodes and represented by its exemplar. In query time, source and destination pairs are connected to their respective exemplars and the path between those exemplars is found. After this, we move toward minimizing the city …

Transformation Groups And The Method Of Darboux, Brandon P. Ashley

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In the study of partial differential equations (PDE), one is often concerned as to whether or not explicit solutions can be obtained via various integration techniques. One such technique, known as the method of Darboux, has had particular success in solving nonlinear problems as demonstrated by the classical works of Goursat. Recently, Anderson, Fels, and Vassiliou provided a far-reaching generalization of Vessiot’s group-theoretic interpretation of the method of Darboux. This generalization allows for the characterization of Darboux integrable systems in terms of fundamental geometric invariants as well as the construction of Darboux integrable systems in general.

In this work, we …

On Predicting Omnidirectional Honey Bee Traffic Using Weather And Electromagnetic Radiation, Daniel G. Hornberger

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Honey bees are responsible for pollinating many important crops in the United States. However, honey bee populations have declined significantly since 1961. While some causes of this decline are known, others are not. By utilizing electronic bee hive monitoring (EBM) systems, bee keepers and researchers have an added resource in determining the causes of these declines so that the issues can be remedied. For nearly five months (May through October) during the 2020 honey bee foraging season in Logan, Utah, USA, we collected on-site weather and electromagnetic radiation (EMR) readings and videos of the hive entrances of six bee hives …

Geometrization Of Perfect Fluids, Scalar Fields, And (2+1)-Dimensional Electromagnetic Fields, Dionisios Sotirios Krongos

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Rainich equations provide a purely geometrical interpretation of matter in terms of the gravitational field it generates. All this takes place within the geometrical formulation of gravity provided by Einstein’s General Theory of Relativity. Rainich-type conditions giving spacetime "goemetrizations" are reviewed and extended. Three types of matter are considered: perfect fluids, scalar fields, and electromagnetic fields.

Predictive Models Of Post-Wildfire Debris Flow Volume And Grain Size Distribution In The Intermountain West, Sara Wall

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Post-fire debris flows represent the most erosive and potentially hazardous consequence associated with increasing wildfire severity. While an abundance of research has explored where they are likely to occur and their potential magnitude, investigations into understanding how they impact downstream resources are limited. Recent advancements are seeking to link predictive models together to be able to predict how erosion after wildfire may impact reservoirs and aquatic habitat downstream. However, there are two key missing pieces into our ability to examine watershed-scale impacts of post-fire erosion. These include having accurate predictions of how much sediment is likely to be deposited by …

Essays Related To Water Transfer And Water Sharing: The Past And The Present, Arpita Nehra

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This dissertation explores the impacts of resource procurement on economic growth and urbanization in a county through a historical case study, moving on to discuss the welfare impacts of resource-sharing in two regions. The first two essays explore the impact of the Owens Valley water transfer in the 1900s on the urban sprawl and the economic growth of Los Angeles. The main contribution that the first two essays make is to present an empirical analysis on the impact of procurement of resources on the economy. The third essay examines the welfare impacts of a proposed water sharing and development project. …

Lithological And Geochemical Characterization Of Ramp Sediments And A Depositional Model Of The Ordovicain Garden City Formation, Northeastern Utah, Kenneth W. Kehoe

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Ordovician Garden City Formation is a mostly marine limestone rock formation deposited in what is known today as the Northern Utah Basin in North America ~485.5 million years ago. Previous research on the Pogonip Group, a time equivalent rock formation located in the Ibex Basin south of the Northern Utah Basin, has identified nine cycles of sea-level fall and rise. However, these nine sea-level cycles have proven difficult to identify within the Garden City Formation due to the limited contrast between rock types within the rock formation. Previous research on the Garden City has approximated these sea-level cycles through …

Absolute Neutral Densities And Temperatures And Their Climatologies In The Middle Atmosphere Using An Optimal Estimation Method With Rayleigh-Scatter Lidar Observations Obtained At Utah State University, Jonathan L. Price

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Earth’s atmosphere is comprised of layers which can be defined by their temperature characteristics. These layers are the troposphere, stratosphere, mesosphere and thermosphere. The region where life exists is in the troposphere, however the study of the layers above is important as changes in these regions can directly impact, or indicate significant changes in, weather in the troposphere. The mesosphere is the least well-known region because it is the most difficult to observe. One of the best tools for observing this region is the Rayleigh-scatter lidar. It is capable of remotely observing the entirety of the mesosphere with good …

On The Geometry Of The Moduli Space Of Certain Lattice Polarized K3 Surfaces And Their Picard-Fuchs Operators, Michael T. Schultz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

K3 surfaces have a long and rich study in mathematics, and more recently in physics via string theory. Often, K3 surfaces come in multiparameter families - the parameters describing these surfaces fit together to form their own geometric space, a so-called moduli space. In particular, the moduli spaces of K3 surfaces equipped with a lattice polarization can sometimes be constructed explicitly, which subsequently reveals important information about the original K3 surface.

In this work, we construct such families explicitly from certain rational elliptic surfaces via the so-called mixed-twist construction of Doran & Malmendier, which in turn produces the moduli …

Curriculum Complexity And Graduation Rates At Utah State University, Hayden Hoopes

Undergraduate Honors Capstone Projects

This study utilizes a curricular analytics framework developed by Heileman et al. (2018) to examine the relationship between curriculum complexity and graduation rates in academic programs at Utah State University. The goal in quantifying the complexity of curricula is to determine whether or not prerequisite courses and other factors of curricula structure impacts graduation from the university. To accomplish this goal, curriculum complexity spreadsheets were developed for 96 degree programs at the university, which facilitated the assignment of curriculum complexity scores to the 6,337 students who qualified for the quasi-experimental study. Logistic regression was then applied to the resulting data …

Charge Transport In Dielectric: The Pulsed Electroacoustic Method, Zachary Gibson

Physics Student Research

Understanding and predicting charge accumulation and transport in dielectric materials is vital in applications where excess charge can accumulate including semiconductor devices, high-power electronic devices, high voltage DC cabling, high-energy physics facilities, plasma chambers, and spacecraft charging. Excess charge accumulation may result in electrostatic discharge events, which are the leading cause of spacecraft failure due to the space environment. The pulsed electroacoustic method allows you to “pop the hood” and non-destructively directly measure the embedded charge distributions in dielectric materials. Charge transport in disordered dielectric materials, measurements with the pulsed electroacoustic system, and comparison to models will be presented.

Geodetic Model For Teaching Motion On The Earth's Spheroidal Surface, Boyd F. Edwards, John M. Edwards

All Physics Faculty Publications

We explore the forces that shape our spheroidal Earth and the forces that govern the motion of a puck that slides without friction on its surface. The Earth's stable spheroidal shape (apart from small-scale surface features) is determined by balancing the gravitational forces that hold it together against the centrifugal forces that try to tear it apart. The motion of a puck on its surface differs profoundly from motion on a sphere because the Earth's spheroidal deformations neutralize the centrifugal and gravitational forces on the puck, leaving only the Coriolis force to govern the motion. Yet the Earth's spheroidal deformations …

Managing Water Stored For The Environment During Drought, Sarah Null, Jeffrey Mount, Brian Gray, Michael Dettinger, Kristen Dybala, Gokce Sencan, Anna Sturrock, Barton Thompson, Harrison Zeff

Watershed Sciences Faculty Publications

Storing water in reservoirs is important for maintaining freshwater ecosystem health and protecting native species. Stored water also is essential for adapting to the changing climate, especially warming and drought intensification. Yet, reservoir operators often treat environmental objectives as a constraint, rather than as a priority akin to water deliveries for cities and farms. Reservoir management becomes especially challenging during severe droughts when surface water supplies are scarce, and urban and agricultural demands conflict with water supplies needed to maintain healthy waterways and wetlands. In times of drought, most freshwater ecosystems suffer.

This blog post examines 2021 water year actions …

Comparison Of Charge Deposition Profiles In Polymers Irradiated With Monoenergetic Electrons: Pulsed Electroacoustic Measurements And Af-Numit3 Modeling, Zachary Gibson, Jr Dennison, Brian Beecken

Physics Student Research

Successful spacecraft design and charging mitigation techniques require precise and accurate knowledge of charge deposition profiles. This paper compares models of charge deposition and transport using a venerable deep dielectric charging code, AF-NUMIT3, with direct measurements of charge profiles via pulsed electroacoustic (PEA) measurements. Eight different simulations were performed for comparison to PEA experiments of samples irradiated by 50 keV or 80 keV monoenergetic electrons in vacuum and at room temperature. Two materials, polyether-ether ketone (PEEK) and polytetrafluoroethylene (PTFE), were chosen for their very low conductivities so that minimal charge migration would occur between irradiation and PEA measurements. PEEK was …

Embedded Charge Distributions In Electron Irradiated Polymers – Pulsed Electroacoustic Method Reproducibility And Calibration, Zachary Gibson, Jr Dennison, Ryan Hoffmann

Physics Student Research

The pulsed electroacoustic (PEA) method has been used to measure the embedded charge distributions in electron irradiated polymers. The PEA method allows for non-destructive direct measurements of embedded charge distributions in dielectric materials. Samples of polyether-etherketone (PEEK) and polytetrafluoroethylene (PTFE) of 125 μm or 250 μm thickness were tested after irradiation with either a 50 keV or 80 keV electron beam. The reproducibility of the PEA method and the experimental conditions were studied by: (i) measuring each sample multiple times in a given mounting configuration, (ii) re-measuring each sample after repositioning them in the PEA test fixture, and (iii) measuring …