Physical Sciences and Mathematics Commons^™

Evaluation Of The Community Multiscale Air Quality Model For Simulating Winter Ozone Formation In The Uinta Basin, Rebecca Matichuk, Gail Tonnesen, Deborah Luecken, Rob Gillam, Sergey L. Napelenok, Kirk R. Baker, Donna Schwede, Ben Murphy, Detlev Helmig, Seth N. Lyman, Shawn Roselle

Bingham Research Center

The Weather Research and Forecasting (WRF) and Community Multiscale Air Quality (CMAQ) models were used to simulate a 10 day high-ozone episode observed during the 2013 Uinta Basin Winter Ozone Study (UBWOS). The baseline model had a large negative bias when compared to ozone (O₃) and volatile organic compound (VOC) measurements across the basin. Contrary to other wintertime Uinta Basin studies, predicted nitrogen oxides (NO_x) were typically low compared to measurements. Increases to oil and gas VOC emissions resulted in O₃ predictions closer to observations, and nighttime O₃ improved when reducing the deposition velocity …

Expression Of Wnt-Signaling Pathway Genes And Their Associations With Mirnas In Colorectal Cancer, Martha L. Slattery, Lila E. Mullany, Lori C. Sakoda, Wade S. Samowitz, Roger K. Wolff, John R. Stevens, Jennifer S. Herrick

Mathematics and Statistics Faculty Publications

The Wnt-signaling pathway functions in regulating cell growth and thus is involved in the carcinogenic process of several cancers, including colorectal cancer. We tested the hypothesis that multiple genes in this signaling pathway are dysregulated and that miRNAs are associated with these dysregulated genes. We used data from 217 colorectal cancer (CRC) cases to evaluate differences in Wnt-signaling pathway gene expression between paired CRC and normal mucosa and identify miRNAs that are associated with these genes. Gene expression data from RNA-Seq and miRNA expression data from Agilent Human miRNA Microarray V19.0 were analyzed. We focused on genes most strongly associated …

Mitigating Projected Impacts Of Climate Change And Building Resiliency Through Permaculture: A Community ‘Bee Inspired Gardens’ Movement In The Desert Southwest, Usa, Roslynn Brain, Jeffrey Adams, Jeremy Lynch

Environment and Society Faculty Publications

Permaculture, an integrative design process creating resilient and productive landscapes and communities, can serve as a useful mitigation tool for projected climate change impacts. In the United States, the desert southwest town of Moab, Utah, has employed permaculture design in a community initiative called ‘Bee Inspired Gardens.’ This initiative has harnessed social capital to create resilient landscapes demonstrating pollinator health, water conservation, and perennial food and forage systems. Bee Inspired Gardens have been designed at a University, middle school, charter school, Bureau of Land Management property, hotel, public park, environmental education non-profit, and more. Community members are now harvesting fruit …

Emissions Of Organic Compounds From Produced Water Ponds, Seth Lyman

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We measured fluxes of methane, a suite of non-methane hydrocarbons (C2-C11), light alcohols, and carbon dioxide from oil and gas produced water storage and disposal ponds in Utah (Uinta Basin) and Wyoming (Upper Green River Basin) United States during 2013-2016. In this paper, we discuss the characteristics of produced water composition and air-water fluxes, with a focus on flux chamber measurements. In companion papers, we will (1) report on inverse modeling methods used to estimate emissions from produced water ponds, including comparisons with flux chamber measurements, and (2) discuss the development of mass transfer coefficients to estimate emissions and place …

Effect Of An 860-M Thick, Cold, Freshwater Aquifer On Geothermal Potential Along The Axis Of The Eastern Snake River Plain, Idaho, Thomas E. Lachmar, Thomas G. Freeman, Christopher J. Sant, Jeffrey R. Walker, Joseph F. Batir, John W. Shervais, James P. Evans, Dennis L. Nielson, David D. Blackwell

Geosciences Faculty Publications

A 1912-m exploration corehole was drilled along the axis of the eastern Snake River Plain, Idaho. Two temperature logs run on the corehole display an obvious inflection point at about 960 m. Such behavior is indicative of downward fluid flow in the wellbore. The geothermal gradient above 935 m is 4.5 °C/km, while the gradient is 72–75 °C/km from 980 to 1440 m. Projecting the higher gradients upward to where they intersect the lower gradient on the temperature logs places the bottom of the cold, freshwater Snake River Plain aquifer, which suppresses the geothermal gradient at this location, at least …

An Investigation Of The Alkali Metals In The Fcc Structure Using An Embedded-Atom-Method (Eam) Model, Marcus Jackman

Physics Capstone Projects

Embedded-atom-method models have been used in the calculation and prediction of many vibrational and thermal properties of materials. In 2012 Wilson and Riffe constructed a model that predicts dispersion relations and frequency-moment Debye temperatures of the alkali metals with a greater degree of accuracy than previous models. The Wilson-Riffe model was implemented using MATLAB code. Here that model is extended to model alkali metals in the close-packed fcc structure. Code development is discussed, and results are presented for dispersion relations, density of states, Debye temperatures and free energy. The vibrational free energy combined with a suitable constant representing the electronic …

Usarray Imaging Of Continental Crust In The Conterminous United States, Xiaofei Ma, Anthony R. Lowry

Geosciences Faculty Publications

The thickness and bulk composition of continental crust provide important constraints on the evolution and dynamics of continents. Crustal mineralogy and thickness both may influence gravity anomalies, topographic elevation, and lithospheric strength, but prior to the inception of EarthScope’s USArray, seismic measurements of crustal thickness and properties useful for inferring lithology are sparse. Here we improve upon a previously published methodology for joint inversion of Bouguer gravity anomalies and seismic receiver functions by using parameter space stacking of cross correlations of modeled synthetic and observed receiver functions instead of standard H-κ amplitude stacking. The new method is applied to estimation …

The Value Of Native Plants And Local Production In An Era Of Global Agriculture, Oren Shelef, Peter J. Weisberg, Frederick D. Provenza

Wildland Resources Faculty Publications

For addressing potential food shortages, a fundamental tradeoff exists between investing more resources to increasing productivity of existing crops, as opposed to increasing crop diversity by incorporating more species. We explore ways to use local plants as food resources and the potential to promote food diversity and agricultural resilience. We discuss how use of local plants and the practice of local agriculture can contribute to ongoing adaptability in times of global change. Most food crops are now produced, transported, and consumed long distances from their homelands of origin. At the same time, research and practices are directed primarily at improving …

Ion Parallel Closures, Jeong-Young Ji, Hankyu Q. Lee, Eric D. Held

All Physics Faculty Publications

Ion parallel closures are obtained for arbitrary atomic weights and charge numbers. For arbitrary collisionality, the heat flow and viscosity are expressed as kernel-weighted integrals of the temperature and flow-velocity gradients. Simple, fitted kernel functions are obtained from the 1600 parallel moment solution and the asymptotic behavior in the collisionless limit. The fitted kernel parameters are tabulated for various temperature ratios of ions to electrons. The closures can be used conveniently without solving the kinetic equation or higher order moment equations in closing ion fluid equations.

Introduction To The Usu Library Of Solutions To The Einstein Field Equations, Ian M. Anderson, Charles G. Torre

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This is a Maple worksheet providing an introduction to the USU Library of Solutions to the Einstein Field Equations. The library is part of the DifferentialGeometry software project and is a collection of symbolic data and metadata describing solutions to the Einstein equations.

3d Photogrammetry Quantifies Growth And External Erosion Of Individual Coral Colonies And Skeletons, Renata Ferrari, Will F. Figueira, Morgan S. Pratchett, Tatiana Boube, Arne Adam, Tania Kobelkowsky-Vidrio, Steve S. Doo, Trisha Brooke Atwood, Maria Byrne

Watershed Sciences Faculty Publications

Growth and contraction of ecosystem engineers, such as trees, influence ecosystem structure and function. On coral reefs, methods to measure small changes in the structure of microhabitats, driven by growth of coral colonies and contraction of skeletons, are extremely limited. We used 3D reconstructions to quantify changes in the external structure of coral colonies of tabular Acropora spp., the dominant habitat-forming corals in shallow exposed reefs across the Pacific. The volume and surface area of live colonies increased by 21% and 22%, respectively, in 12 months, corresponding to a mean annual linear extension of 5.62 cm yr⁻¹ (±1.81 SE). …

Foundations Of Translational Ecology, Carolyn Af Enquist, Stephen T. Jackson, Gregg M. Garfin, Frank W. Davis, Leah R. Gerber, Jeremy A. Littell, Jennifer L. Tank, Adam J. Terando, Tamara U. Wall, Benjamin Halpern, J. Kevin Hiers, Toni Kyn Morelli, Elizabeth Mcnie, Nathan L. Stephenson, Matthew A. Williamson, Connie A. Woodhouse, Laurie Yung, Mark W. Brunson, Kimberly R. Hall, Lauren M. Hallett, Dawn M. Lawson, Max A. Mortiz, Koren Nydick, Amber Pairis, Andrea J. Ray, Claudia Regan, Hugh D. Safford, Mark W. Schwartz, M. Rebecca Shaw

Environment and Society Faculty Publications

Ecologists who specialize in translational ecology (TE) seek to link ecological knowledge to decision making by integrating ecological science with the full complement of social dimensions that underlie today's complex environmental issues. TE is motivated by a search for outcomes that directly serve the needs of natural resource managers and decision makers. This objective distinguishes it from both basic and applied ecological research and, as a practice, it deliberately extends research beyond theory or opportunistic applications. TE is uniquely positioned to address complex issues through interdisciplinary team approaches and integrated scientist–practitioner partnerships. The creativity and context-specific knowledge of resource managers, …

Developing A Translational Ecology Workforce, Mark W. Schwarts, J. Kevin Hiers, Frank W. Davis, Gregg M. Garfin, Stephen T. Jackson, Adam J. Terando, Connie A. Woodhouse, Toni Lyn Morelli, Matthew A. Williamson, Mark W. Brunson

Environment and Society Faculty Publications

We define a translational ecologist as a professional ecologist with diverse disciplinary expertise and skill sets, as well as a suitable personal disposition, who engages across social, professional, and disciplinary boundaries to partner with decision makers to achieve practical environmental solutions. Becoming a translational ecologist requires specific attention to obtaining critical non-scientific disciplinary breadth and skills that are not typically gained through graduate-level education. Here, we outline a need for individuals with broad training in interdisciplinary skills, use our personal experiences as a basis for assessing the types of interdisciplinary skills that would benefit potential translational ecologists, and present steps …

A Universal Genus-Two Curve From Siegel Modular Forms, Andreas Malmendier, Tony Shaska

Mathematics and Statistics Faculty Publications

Let p be any point in the moduli space of genus-two curves M₂ and K its field of moduli. We provide a universal equation of a genus-two curve C_α,β defined over K(α, β), corresponding to p, where α and β satisfy a quadratic α² + bβ² = c such that b and c are given in terms of ratios of Siegel modular forms. The curve C_α,β is defined over the field of moduli K if and only if the quadratic has a K-rational point (α, β). We discover some interesting …

The Pulsed Electro-Acoustic Method, Zack Gibson

Physics Student Research

A Pulsed Electro-Acoustic (PEA) system has been developed and is being used to study electron charge injection, transport, and relaxation in highly disordered insulating materials. The material is placed between two electrodes in a parallel plate configuration. The sample is injected with charge via electrode charging by applying a high voltage across the sample. The distribution of charge in the dielectric is measured with PEA by applying a ~100 MHz ~850 V electric pulse to displace the embedded charge, causing an acoustic pulse monitored via time-of-flight with a thin piezoelectric sensor allowing observation of charge accumulation and dissipation. Measurements of …

Phenology Largely Explains Taller Grass At Successful Nests In Greater Sage-Grouse, Joseph T. Smith, Jason D. Tack, Kevin Doherty, Brady W. Allred, Jeremy D. Maestas, Lorelle I. Berkeley, Seth J. Dettenmaier, Terry A. Messmer, David E. Naugle

Wildland Resources Faculty Publications

Much interest lies in the identification of manageable habitat variables that affect key vital rates for species of concern. For ground-nesting birds, vegetation surrounding the nest may play an important role in mediating nest success by providing concealment from predators. Height of grasses surrounding the nest is thought to be a driver of nest survival in greater sage-grouse (Centrocercus urophasianus; sage-grouse), a species that has experienced widespread population declines throughout their range. However, a growing body of the literature has found that widely used field methods can produce misleading inference on the relationship between grass height and nest success. Specifically, …

Stability Of Equilibria In Quantitative Genetic Models Based On Modified-Gradient Systems, Benjamin J. Ridenhour, Jerry R. Ridenhour

Mathematics and Statistics Faculty Publications

Motivated by questions in biology, we investigate the stability of equilibria of the dynamical system x′ = P(t)∇f(x) which arise as critical points of f, under the assumption that P(t) is positive semi-definite. It is shown that the condition ∫^∞λ₁(P(t)) dt = ∞, where λ₁(P(t)) is the smallest eigenvalue of P(t), plays a key role in guaranteeing uniform asymptotic stability and in providing information on the basis of attraction of those equilibria.

Usu Rayleigh-Scatter Lidar 2014-2015 Nightly Temperatures, Leda Sox, Vincent B. Wickwar, Tao Yuan

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Temperatures from a collocated Rayleigh-scatter lidar (RSL) and sodium resonance lidar were compared night-by-night, at different altitude levels, and hour-by-hour.

Three zipped files are provided.

USU RSL 2014-2015 [O] Corrected Temperatures.zip contains 36 files, one per night and hour, in RSLHourlyTemperaturesYYYYMMDDhour#.txt filename format.

USU RSL 2014-2015 Hourly Temperatures.zip contains 36 files, one per night and hour, in RSLHourlyTemperaturesYYYYMMDDhour#.txt filename format.

USU RSL 2014-2015 Nightly Temperatures.zip contains 19 files, one per night, in RSLTemperaturesYYYYMMDD.txt filename format.

Ncer Assistance Agreement Annual Progress Report For Grant #83582401 - Assessment Of Stormwater Harvesting Via Manage Aquifer Recharge (Mar) To Develop New Water Supplies In The Arid West: The Salt Lake Valley Example, Ryan Dupont, Joan E. Mclean, Richard C. Peralta, Sarah E. Null, Douglas B. Jackson-Smith

Civil and Environmental Engineering Faculty Publications

The aims of the original proposed project remain the same, that is, to test the hypothesis that Managed Aquifer Recharge (MAR) for stormwater harvesting is a technically feasible, socially and environmentally acceptable, economically viable, and legally feasible option for developing new water supplies for arid Western urban ecosystems experiencing increasing population, and climate change pressures on existing water resources. The project is being carried out via three distinct but integrated components that include: 1) Monitoring of existing distributed MAR harvesting schemes involving a growing number of demonstration Green Infrastructure (GI) test sites; 2) Integrated stormwater/vadose zone/groundwater/ ecosystem services modeling; and …

Does Strong Tropospheric Forcing Cause Large-Amplitude Mesospheric Gravity Waves? A Deepwave Case Study, Martina Bramberger, Andreas Dörnbrack, Katrina Bossert, Benedikt Ehard, David C. Fritts, Bernd Kaifler, Christian Mallaun, Andrew Orr, Pierre-Dominique Pautet, Markus Rapp, Michael J. Taylor, Simon Vosper, Bifford P. Williams, Benjamin Witschas

Publications

On 4 July 2014, during the Deep Propagating Gravity Wave Experiment (DEEPWAVE), strong low-level horizontal winds of up to 35 m s⁻¹ over the Southern Alps, New Zealand, caused the excitation of gravity waves having the largest vertical energy fluxes of the whole campaign (38 W m⁻²). At the same time, large-amplitude mesospheric gravity waves were detected by the Temperature Lidar for Middle Atmospheric Research (TELMA) located at Lauder (45.0°S, 169.7°E), New Zealand. The coincidence of these two events leads to the question of whether the mesospheric gravity waves were generated by the strong tropospheric forcing. To …

Electron Parallel Transport For Arbitrary Collisionality, Jeong-Young Ji, Gunsu S. Yun, Yong-Su Na, Eric D. Held

All Physics Faculty Presentations

Integral (nonlocal) closures [J.-Y. Ji and E. D. Held, Phys. Plasmas 21, 122116 (2014)] are combined with the momentum balance equation to derive electron parallel transport relations. For a single harmonic fluctuation, the relations take the same form as the classical Spitzer theory (with possible additional terms): The electric current and heat flux densities are connected to the modified electric field and temperature gradient by transport coefficients. In contrast to the classical theory, the dimensionless coefficients depend on the collisionality quantified by a Knudsen number, the ratio of the collision length to the angular wavelength. The key difference comes from …

Electron Parallel Transport For Arbitrary Collisionality, Jeong-Young Ji, Gunsu S. Yun, Yong-Su Na, Eric D. Held

All Physics Faculty Publications

Integral (nonlocal) closures [J.-Y. Ji and E. D. Held, Phys. Plasmas 21, 122116 (2014)] are combined with the momentum balance equation to derive electron parallel transport relations. For a single harmonic fluctuation, the relations take the same form as the classical Spitzer theory (with possible additional terms): the electric current and heat flux densities are connected to the modified electric field and temperature gradient by transport coefficients. In contrast to the classical theory, the dimensionless coefficients depend on the collisionality quantified by a Knudsen number, the ratio of the collision length to the angular wavelength. The key difference comes from …

Comparison Of Various Means Of Evaluating Molecular Electrostatic Potentials For Noncovalent Interactions, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

The various heterodimers formed by a series of Lewis acids with NH3 as Lewis base are identified. Lewis acids include those that can form chalcogen (HSF and HSBr), pnicogen (H2PF and H2PBr), and tetrel (H3SiF and H3SiBr) bonds, as well as H‐bonds and halogen bonds. The molecular electrostatic potential (MEP) of each Lewis acid is considered in a number of ways. Pictorial versions show broad regions of positive and negative MEP, on surfaces that vary with respect to either the value of the chosen isopotential, or their distance from the nuclei. Specific points are identified where the MEP reaches a …

Characterizing The Effects Of Radiation On Muscle Cells, Lori Caldwell, Elizabeth Vargis, Charles Harding, Jr Dennison

Posters

One of the primary concerns for those spending time in low gravity and high radiation environments is muscle atrophy. A major cause of muscular atrophy is oxidative stress which is amplified by increased levels of ionizing radiation during spaceflight. Additionally, high levels of radiation can damage DNA, increasing the risk of cancer. Utah State University’s Space Environment Test Facility was used to irradiate C2C12 myoblasts and human vascular endothelial cells with a beta-radiation dosage mimicking that on the International Space Station and a 3-year deep space mission.

Can Hcch/Hbnh Break B=N/C=C Bonds Of Single-Wall Bn/Carbon Nanotubes At Their Surface?, Tapas Kar, Peter Grüninger, Steve Scheiner, Holger F. Bettinger, Ajit K. Roy

Chemistry and Biochemistry Faculty Publications

The iminoborane (HBNH) molecule, which prefers cycloaddition reactions, selectively breaks a B=N bond of smaller diameter single-wall BNNTs and expands a ring at their surface, either at the edges or at the middle of the tube. Density functional theory (DFT) is used to test whether its organic counterpart HCCH can do the same with BNNTs. HCCH-BNNT complexes are identified and transition states located for these combination reactions. Also explored are possible reactions of HBNH with SWNTs and HCCH with SWNTs. Data suggest that B=N (C=C) bond breaking, followed by ring expansion at the surface may be possible. Although [2+2] cycloaddition …

Sheaf Theory Approach To Distributed Applications: Analysing Heterogeneous Data In Air Traffic Monitoring, Seyed M.H. Mansourbeigi

Computer Science Student Research

The goal of the present article is to demonstrate a mathematical modeling for distributed applications. The present paper applies tools from topology and sheaf theory as an appropriate mathematical modeling to reflect interactions among elements of distributed applications resources. Sensors are characterized from their topological representations in distributed network system. This modeling is applied for the study of the air traffic monitoring system and discuss the model in detail.

Electron Yield Of A Carbon-Composite Nanodielectric, Matthew Robertson, Justin Christensen, Greg Wilson, Jr Dennison

Posters

No abstract provided.

Temperature Dependence Of Electrostatic Discharge In Highly Disordered Polymers, Tyler Kippen, Allen Andersen, Jr Dennison

Posters

No abstract provided.

Pulsed Electro-Acoustic Measurements Of Charging And Relaxation In Low Density Polyethylene, Zachary Gibson

Presentations

No abstract provided.

A Numerical Investigation On Tidal And Gravity Wave Contributions To The Summer Time Na Variations In The Midlatitude E Region, Xuguang Cai, Tao Yuan, J. Vincent Eccles

All Physics Faculty Publications

The Na density variations in the E region have been studied over the past few decades. Although considerable progress in understanding and in modeling the metal layer observations has been made, Na density features above 100 km have yet to be explained. Various studies have linked them to the Na⁺variations, a major reservoir for Na in E region. But the lack of comprehensive modeling investigations and of wind and temperature observations prevents further understanding on this important ion‐neutral coupling topic. In this study, we conduct a numerical simulation on the summer time Na density behavior in the midlatitude …