Physical Sciences and Mathematics Commons^™

A Flexible Consent Management System For Master Person Indices, Aditya Pakalapati

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

In healthcare, a Master Person Index (MPI) is a system that integrates information of individual from multiple data sources. To ensure confidentiality, such systems, particularly in healthcare, need to respect individual and organizational constraints on the sharing of data. This report describes a reusable consent management system that enforces such constraints and how it has been tested in the context of the Utah Department of Health (UDOH) MPI for public health.

Effective Use Of Interactive Learning Modules In Classroom Study For Computer Science Education, Goldee Jamwal

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

The National Science Foundation (NSF) is spending substantial resources to improve science, technology, engineering, and mathematics (STEM) education in the United States. The ultimate goal of these programs is to produce students with a better knowledge of math and science and who are more likely to pursue careers in STEM fields. Interactive learning modules can be used in the classroom environment for effective learning.

This study examines the learning preferences of Logan High School (located in Logan, Utah) students and evaluates the impacts of using interactive learning modules with classroom lectures compared to other traditional methods of teaching.

Effects Of Flooding And Tamarisk Removal On Habitat For Sensitive Fish Species In The San Rafael River, Utah: Implications For Furture Restoration Efforts, Daniel Louis Keller

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Part I of this report is focused on assessment of habitat changes on the San Rafael River after the abnormally high water year in 2011. Having habitat data and aerial imagery collected in 2010 (pre-flood) provided an opportunity to assess how a flood of this magnitude changed river habitat. In 2011 we commissioned a second aerial flight of the San Rafael River to serve as post flood imagery, then used Geographic Information Systems (GIS, ArcMap 10) to analyze river changes due to tamarisk removal and flooding. Our tamarisk removal project appears to have increased the potential for spring floods to …

Web Based Virtual Environment For Education - S'Cape, Atul Thapliyal

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Simulations provide an environment to experiment safely, openly, and repeatedly for learning mastery. However, many simulation environments experienced within a classroom fail to include automated assessment components or automated data collection. Even when assessments are included, often they fail to account for the unpredictable nature of decision-making within a complex, 3D, open-ended simulation environment. Embedding assessments within a virtual simulation environment poses several challenges. First, the program must provide assessments aligned with educational requirements that will not take the learner cognitively “away” from their activities. Second, the program must not detract from the game-like experience that learners find engaging. Third, …

A Study Of The Bioherms Of The Early Ordovician Garden City Formation And A Literature Review Of Early Ordovician Organic Buildups, Heidi Pearce

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

During the Early Ordovician organic buildups formed in shallow seas across the world. This project contains a literature review on these organic buildups with a focus on those occurring in the warm, shallow seas of North America, but also includes a study on organic buildups formed in the cold water region of Russia. The goal of the study was to characterize these Early Ordovician organic buildups in order to identify similarities and differences in their occurrence. The second part of this project is a preliminary study on organic buildups occurring in the Early Ordovician Garden City Formation in Boss Canyon, …

The Effects Of Bison On Cattle Winter Range In The Henry Mountains Of South Central Utah: Resolving A Conflict, Ian M. Ware

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The American Bison in the Henry Mountains are one of the last free-roaming, genetically pure herds of bison remaining in North America. Over the last decade, the herd has used a cattle winter range during the summer and early fall, creating a conflict between the wildlife officials who manage the bison population, and Bureau of Land Management officials and local ranchers who manage the rangeland. At the heart of this conflict is the question of whether bison are negatively impacting the rangeland resource, potentially reducing the abundance of preferable plant species. Negative impacts could include reduced forage availability in the …

Synthesis And Biological Activity Of Aminoglycosides And 1,4-Naphthoquinone Derivatives, Marina Fosso Yatchang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The research described in this dissertation is at the interface of organic chemistry and biology, and it aimed at designing and synthesizing biologically active molecules for the possible development of therapeutic agents.

Spinal muscular atrophy is an incurable disease that affects 1 in every 6000 babies, making it the leading genetic cause of infant mortality. While no treatment is available, efforts are being taken to solve this issue. Part of the work outlined in this dissertation was carried out in collaboration with researchers from the University of Missouri to investigate a potential therapeutic for this disease.

In addition, the continuous …

Visual Data Mining Techniques For Functional Actigraphy Data: An Object-Oriented Approach In R, Abbass Sharif

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Actigraphy, a technology for measuring a subject's overall activity level almost continuously over time, has gained a lot of momentum over the last few years. An actigraph, a watch-like device that can be attached to the wrist or ankle of a subject, uses an accelerometer to measure human movement every minute or even every 15 seconds. Actigraphy data is often treated as functional data. In this dissertation, we discuss what has been done regarding the visualization of actigraphy data, and then we will explain the three main goals we achieved: (i) develop new multivariate visualization techniques for actigraphy data; (ii) …

The Application Of Tomographic Reconstruction Techniques To Ill-Conditioned Inverse Problems In Atmospheric Science And Biomedical Imaging, Vern Philip Hart Ii

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Tomography is an imaging technique in which 3D models of objects are created from several 2D projections viewed at different angles. When the number of available projections is limited, the resulting data are said to be sparse. This restriction is often a direct result of the imaging geometry used to acquire the data. One-sided views and a small number of receivers can reduce the range of available projections, which makes the object more difficult to reconstruct. Approximate solutions to difficult imaging problems can be obtained using a class of iterative algorithms known as the algebraic reconstruction techniques (ARTs). The presented …

Space Plug-And-Play Architecture Networking: A Self-Configuring Heterogeneous Network Architecture, Jacob Holt Christensen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In spacecraft engineering, the time and money involved in satellite construction is largely spent on design and integration of custom hardware and software. These efforts are duplicated for nearly every satellite with little to no reuse between spacecraft. There is a huge potential for cost savings in removing the duplication of work. However, there is a lack of standardization in the spaceflight community, causing soaring costs and delayed schedules as each component of a spacecraft is individually designed and custom built.

The Air Force Research Laboratory (AFRL) has developed the Space Plug-and-Play Architecture (SPA) to address this problem. SPA provides …

In Situ Measurements Of Electron-Beam-Induced Surface Voltage Of Highly Resistive Materials, Joshua Hodges

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Surface charging and subsequent electrostatic discharge due to interactions with the space environment is one of the primary concerns of spacecraft charging studies. Laboratory measurements of the evolution of surface voltages and dissipation currents under simulated space conditions are the primary method used to determine the response of key spacecraft materials to diverse incident fluxes. Increasing the database of information for the electronic properties of insulating materials can assist spacecraft designers in mitigating the harsh effects of the space environment.

The Utah State Materials Physics Group, with the funding of the NASA James Webb Space Telescope project and personnel support …

Modeling Lithospheric Rheology From Modern Measurements Of Bonneville Shoreline Deformation, Eric P. Beard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Here I develop a new method for estimating differences in elevation between pairs of paleo-lake shoreline features. This method is applied to Lake Bonneville, a large lake that inundated nearly 1/3 of the state of Utah as well as parts of Nevada and Idaho from 34 to 11.5 thousand years ago. Under the weight of the lake water load, the surface of the Earth was depressed by up to 75 m. This occurred as Earth mantle rock at depth flowed outward in response to the weight of the lake. I use this new methodology to compile here a denser sample …

Ultrasonic Analysis Of Breast Tissue For Pathology Classification, Kristina Marie Sorensen

Undergraduate Honors Capstone Projects

Real time measurements may assist surgeons in obtaining negative or cancer free margins during lumpectomy to eliminate invasive re-excision. Previous findings show that high-frequency ultrasound can differentiate between a range of breast pathologies in surgical specimens. Two parameters, peak density and second-order spectral slope, are sensitive to histopathology. Our objective was to determine the mechanism linking high-frequency ultrasound to histology. The hypothesis is that ultrasound sensitivity is a function of the microscopic heterogeneity (and thus histology) of the tissue. Ultrasonic results from breast specimens were used to construct a multivariate analysis of the parameters that permitted differentiation of normal, adipose, …

A Classroom Experiment: Implementing A Math-Talk Environment In A University Setting, Janice Bodily

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

A need for reform in teaching mathematics has long been recognized. The traditional classroom with the sage on the stage lacks a higher level of engagement for the students and therefore, produces a lower level of student satisfaction. The math-talk classroom is one attempt to engage students and to raise the level of interaction and discussion, thus enabling students to increase their level of comprehension. In an effort to create a math-talk experience in my Calculus II course, I applied the methodology of Thinking Through a Lesson Protocol (TTLP) to test its effectiveness in assisting the instructor in creating an …

A Prototype Automated Resolution Service For Public-Health Master Person Index, Sarvesh Jain

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

A Master Person Index (MPI) is a software system that links together the records about individuals from a diverse set of data sources and that allows data consumers to ¬¬retrieve correlated data for a given person. The Utah Department of Health recently contracted with Utah State University to build an MPI that links data from four initial data sources, and with enough extensibility that it will eventually handle dozens. This MPI, called the Utah Public-health Master Person Index or phMPI, was to include a special software component that automatically computed the “best version of truth” about each individual using correlated …

A Mechanistic Study Of Catalytic Promiscuity In Protein Phosphatase 1, Yuan Chu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

"Catalytic promiscuous" enzymes, which possess additional activities besides their "native" activity, albeit with a lower efficiency than the main reaction, have become a new frontier for biochemistry and have received considerable attention. Catalytic promiscuity has been suggested to contribute to enzyme evolution through the mechanism of gene duplication followed by specialization of one of the two copies for the new function. Mimicking this evolutionary shortcut could also provide a more efficient route to changing the function of proteins by directed evolution.

The promiscuous phosphatase PP1 is a member of the phosphoprotein phosphatase (PPP) gene family, which is critical for the …

The Chemical Evolution Of Oceanic And Continental Lithosphere: Case Studies In The Us Cordillera, Marlon Mauricio Jean

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Among the terrestrial planets, only Earth has volcanism and plutonism that is related to plate tectonics. At the bottom of the oceans, mid-ocean ridges form where tectonic plates drift apart. More visible, and explosively dangerous, is volcanism related to the subduction of oceanic plates back into the Earth’s mantle. Less clear is the origin of the third major type of volcanism, the so-called intra-plate volcanism, which is thought to represent thermally driven upwellings from the lower mantle. This dissertation investigates two of these unique volcano-tectonic settings which occur in the western United States.

Subduction zones are regions of intense earthquake …

The Effect Of Growth Parameters On The Height And Density Of Carbon Nanotube Forests, Robert Welch Call

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Rolled-up graphene sheets, known as carbon nanotubes, are grown in vertically aligned arrays called carbon nanotube forests (CNTFs). CNTFs make extremely dark surfaces. They are being investigated for use on space crafts as calibration surfaces and to protect optical sensors from unwanted signals. These CNTFs are grown by injecting a precursor consisting of a metal catalyst particle and a hydrocarbon component into a furnace at high temperature (~700°C). This study investigates the influence of several different growth parameters on the final height and density of the CNTF. Height and density influence the absorbance of the surface at different wavelengths.

Sigtree: An Automated Meta-Analytic Approach To Find Significant Branches In A Phylogenetic Tree, Todd R. Jones

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An experiment was performed on two groups of mice, the first group receiving a refined wheat diet, and the second group receiving a whole wheat diet. The levels of abundance of hundreds of bacteria in the guts of the mice were measured. Of interest was whether the levels of these bacteria were different depending on type of diet. In addition, it was desired to examine differences by diet in all of the families of bacteria. These family relationships are represented in a tree, and it was determined helpful to color the branches of this tree based on the differences of …

Assessing Changes In The Abundance Of The Continental Population Of Scaup Using A Hierarchical Spatio-Temporal Model, Beth E. Ross

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

In ecological studies, the goal is often to describe and gain further insight into ecological processes underlying the data collected during observational studies. Because of the nature of observational data, it can often be difficult to separate the variation in the data from the underlying process or 'state dynamics.' In order to better address this issue, it is becoming increasingly common for researchers to use hierarchical models. Hierarchical spatial, temporal, and spatio-temporal models allow for the simultaneous modeling of both first and second order processes, thus accounting for underlying autocorrelation in the system while still providing insight into overall spatial …

Plants Search Engine, Purnachandra Kanagala

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

This project presents a Web search engine for North American plant species that provides easy and fast access to plant information from multiple data sources. This project’s overarching goal is to integrate plant information from different sources under a single interface to allow any user to search said information from a universal portal rather than searching in several places. The user interface was designed and customized to help the user search for anything related to North American plants and get the required information within few clicks with the help of the faceted browsing. The user experience is more enhanced by …

Interactive Random Forests Plots, Anna T. Quach

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Random Forests is a useful data mining tool that is quite popular in finding variable importance. However, many people don’t make use of the Random Forests results in interactive graphs. Partly, this is because software packages that can do interactive graphs can’t handle large data sets and those that use Random Forests have large data sets or many variables. A new software package in R, known as iPlots eXtreme, that is still in development makes it simple to explore large data sets interactively. I have created a function, called irfplot (interactive random forests plot) that specifically uses Random Forests to …

Recource Limited Testing Center Scheduling For A Web-Based Testing Application, Adam J. Graham

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Testing centers are a useful tool to help instructors deliver computer-based tests, but computers resources are expensive and therefore limited. This paper describes a method by which testing center(s) may use iNetTest, a web-based computer aided testing system, to house and administer exams. The algorithm discussed in this paper makes it possible for instructors to schedule tests for a given time frame while ensuring that enough computer resources will be available to all of the students. The algorithm prevents the testing center from getting overwhelmed with students while attempting to maximize the usage of the valuable computer resources.

Simulating Loan Repayment By The Sinking Fund Method (Sinking Fund Governed By A Sequence Of Interest Rates), Placede Judicaelle Gangnang Fosso

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

The sinking fund method is a way to repay a loan where the borrower pays the amount of interest accrued by the principal at the end of each time period and puts a certain amount in a sinking fund in order to repay the principal at the end of the loan. Usually, we assume that the interest rate on the sinking fund is the same during the entire time of the loan. In the study, we will depart from the usual assumptions and will look at different scenarios, including when changes of the interest rate on the sinking fund follows …

The Deepwater Horizon Oil Spill Disaster: A Graphical Assessment Of Its Impact On Wildlife, Anvar Suyundikov

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

The Deepwater Horizon oil spill occurred in the Gulf of Mexico on April 20, 2010. Considered the largest accidental marine oil spill in history, oil flowed for three months and approximately five million barrels of oil spilled through by mid-July 2010. In this report, we analyze fish and bird data to assess the impact of the oil spill on the Gulf wildlife. Our findings based on the available fish data for 2005, 2006, and 2010 are not very helpful to make a judgement on the negative impact of the oil spill on fish species. On the other hand, the bird …

Validation Study: A Case Study Of Calculus 1 (Math 1210), Abibat Adebisi Lasisi

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

This report discusses the process of assessing the validity of a test. We provide an analysis of the validation study of a test administered to the first semester calculus students at Utah State University in the Fall 2011 semester. The results of our analysis suggest that the test has some measurement relevance. This implies that the subject contents of the test correlate with the syllabus of the course. Thus, the measurement has some learning level relevance. Our analysis also revealed that the measurement has a high reliability coefficient which signifies some internal consistency of the mea- surement. The relevancy and …

Information Flow In The Spatiotemporal Dynamics Of Cellular Automata, Akshay Thakre

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Decision making in natural systems, such as the body's immune response to a potential pathogen or a bacterial colony's initiation of fruiting due to food scarcity, is distributed over many cells that posses only local information, and not determined globally. Understanding how accurate decisions can be made in such systems where no individual decisions maker has complete information has important implications in distributed software and can provide insights into the biological evolution of complexity. In this work, the process of distributed decision making is modeled using the majority problem in cellular automata, and information theoretic measures of Kolmogorov complexity are …

Ignoring The Spatial Context In Intro Statistics Classes - And Some Simple Graphical Remedies, Nathan Voge

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Statistical data often have a spatial (geographic) context, be it countries of the world, states in the US, counties within a state, cities across the globe, or locations where measurements have been taken. However, most introductory statistics books do not even suggest that such data often are not independent from location, but rather are eected by some spatial association. Remedies are simple: Display data via various map views and brie y discuss which additional information can be extracted from such a graphical representation. In this report, we will visit a variety of popular introductory statistics textbooks and show how some …

Composite Feature-Based Face Detection Using Skin Color Modeling And Svm Classification, Swathi Rajashekar

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

This report proposes a face detection algorithm based on skin color modeling and support vector machine (SVM) classification. Said classification is based on various face features used to detect specific faces in an input color image. A YCbCr color space is used to filter the skin color pixels from the input color image. Template matching is used on the result with various window sizes of the template created from an ORL face database. The candidates obtained above, are then classified by SVM classifiers using the histogram of oriented gradients, eigen features, edge ratio, and edge statistics features.

A Collection And Analysis Of Local Middle Grade Math Projects For The Common Core, Lynnette Checketts

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

The State of Utah has changed the mathematics core curriculum several times over the past decade. The latest change was the adoption of the Common Core State Standards introducing both grade level content standards and standards of mathematical practice that emphasize how students are to study and reason with mathematics at all grade levels. According to state officials, these standards require more mathematical reasoning, problem solving, and deeper understanding than previous core curriculum documents. One way to address this change is for teachers to educate using projects during their instruction as unit starters, daily lessons, and for evaluation purposes. Yet …