Physical Sciences and Mathematics Commons^™

Dissolved Organic Matter Composition And Bioavailability Reflect Ecosystem Productivity In The Western Arctic Ocean, Yuan Shen, Cedric Fichot, Ronald Benner

Faculty Publications

Dissolved organic carbon (DOC) and total dissolved amino acids (TDAA) were measured in high (Chukchi Sea) and low (Beaufort Sea) productivity regions of the western Arctic Ocean to investigate the composition and bioavailability of dissolved organic matter (DOM). Concentrations and DOC-normalized yields of TDAA in Chukchi surface waters were relatively high, indicating an accumulation of bioavailable DOM. High concentrations and yields of TDAA were also observed in the upper halocline of slope and basin waters, indicating off-shelf transport of bioavailable DOM from the Chukchi Sea. In contrast, concentrations and yields of TDAA in Beaufort surface waters were relatively low, indicting …

Coupling Right- And Left-Handed Photons Differently To Charged Matter, Brett David Altschul

Faculty Publications

We consider a modification of electrodynamics in which right- and left-circularly polarized photons are coupled to charged sources differently. Even though photon helicity is a Lorentz invariant quantity, such a modification breaks Lorentz symmetry, as well as locality. The modified theory includes novel magnetic forces between perpendicular currents. Existing data can be used to constrain the modification at approximately a 2 x 10^(-3) level.

Quantum Effects Of A Spacetime Varying Alpha On The Propagation Of Electrically Charged Fermions, Alejandro Ferrero, Brett David Altschul

Faculty Publications

A spacetime-varying fine structure constant α(x ^µ) could generate quantum corrections in some of the coefficients of the Lorentz-violating standard model extension (SME) associated with electrically charged fermions. The quantum corrections depend on ∂µα, the spacetime gradient of the fine structure constant. Lorentz-violating operators involving fermions arise from the one-loop corrections to the quantum electrodynamics (QED) vertex function and fermion self-energy. Both g λµν and c µν terms are generated, at O(∂_µα) and O[(∂_{µα) ² ], respectively. The g λµν terms so generated are different in the vertex and self-energy, which represents a radiatively induced violation …}

Atmospheric Organic Material And The Nutrients Nitrogen And Phosphorus It Carries To The Ocean, Maria Kanakidou, Robert A. Duce, Joseph M. Prospero, Alex R. Baker, Claudia R. Benitez-Nelson, Frank J. Dentener, Keith A. Hunter, Peter S. Liss, Natalie Mahowald, Gregory S. Okin, Manmohan Sarin, Kostas Tsigaridis, Mitsuo Uematsu, Lauren M. Zamora, Tong Zhu

Faculty Publications

[1] The global tropospheric budget of gaseous and particulate non‐methane organic matter (OM) is re‐examined to provide a holistic view of the role that OM plays in transporting the essential nutrients nitrogen and phosphorus to the ocean. A global 3‐dimensional chemistry‐transport model was used to construct the first global picture of atmospheric transport and deposition of the organic nitrogen (ON) and organic phosphorus (OP) that are associated with OM, focusing on the soluble fractions of these nutrients. Model simulations agree with observations within an order of magnitude. Depending on location, the observed water soluble ON fraction ranges from ∼3% to …

Incorporation Of Quantum Effects For Selected Degrees Of Freedom Into The Trajectory-Based Dynamics Using Spatial Domains, Sophya V. Garashchuk, Mikhail V. Volkov

Faculty Publications

The approach of defining quantum corrections on nuclear dynamics of molecular systems incorporated approximately into selected degrees of freedom, is described. The approach is based on the Madelung-de-Broglie-Bohm formulation of time-dependent quantum mechanics which represents a wavefunction in terms of an ensemble of trajectories. The trajectories follow classical laws of motion except that the quantum potential, dependent on the wavefunction amplitude and its derivatives, is added to the external, classical potential. In this framework the quantum potential, determined approximately for practical reasons, is included only into the “quantum” degrees of freedom describing light particles such as protons, while neglecting with …

Breast Tumour Initiating Cell Fate Is Regulated By Microenvironmental Cues From An Extracellular Matrix, Sharmistha Saha, Pang-Kuo Lo, Xinrui Duan, Hexin Chen, Qian Wang

Faculty Publications

Cancer stem cells, also known as tumour-initiating cells (TICs), are identified as highly tumorigenic population within tumours and hypothesized to be main regulators in tumour growth, metastasis and relapse. Evidence also suggests that a tumour microenvironment plays a critical role in the development and progression of cancer, by constantly modulating cell–matrix interactions. Scientists have tried to characterize and identify the TIC population but the actual combination of extracellular components in deciphering the fate of TICs has not been explored. The basic unanswered question is the phenotypic stability of this TIC population in a tissue extracellular matrix setting. The in vivo …

Discrimination Of Colon Cancer Stem Cells Using Noncanonical Amino Acid, Xinrui Duan, Honglin Li, Hexin Chen, Qian Wang

Faculty Publications

Cancer stem cells (CSCs) may be responsible for tumor recurrence. Metabolic labelling of newly synthesized proteins with non-canonical amino acids allows us to discriminate CSCs in mixed populations due to the quiescent nature of these cells.

Il-6 Regulation On Skeletal Muscle Mitochondrial Remodeling During Cancer Cachexia In The ApcMin/+ Mouse, James P. White, Melissa J. Puppa, Shuichi Sato, Song Gao, Robert L. Price, John W. Baynes, Matthew C. Kostek, Lydia E. Matesic, James A. Carson

Faculty Publications

BACKGROUND:

Muscle protein turnover regulation during cancer cachexia is being rapidly defined, and skeletal muscle mitochondria function appears coupled to processes regulating muscle wasting. Skeletal muscle oxidative capacity and the expression of proteins regulating mitochondrial biogenesis and dynamics are disrupted in severely cachectic Apc^Min/+ mice. It has not been determined if these changes occur at the onset of cachexia and are necessary for the progression of muscle wasting. Exercise and anti-cytokine therapies have proven effective in preventing cachexia development in tumor bearing mice, while their effect on mitochondrial content, biogenesis and dynamics is not well understood. The purposes of …

Potential Role Of Inorganic Polyphosphate In The Cycling Of Phosphorus Within The Hypoxic Water Column Of Effingham Inlet, British Columbia, Julia M. Diaz, Ellery D. Ingall, Samuel D. Snow, Claudia R. Benitez-Nelson, Martial Taillefert, Jay A. Brandes

Faculty Publications

[1] The upper basin of Effingham Inlet possesses permanently anoxic bottom waters, with a water column redox transition zone typically occurring at least 40 m above the sediment‐water interface. During our sampling campaign in April and July 2007, this redox transition zone was associated with sharp peaks in a variety of parameters, including soluble reactive phosphorus (SRP) and total particulate phosphorus (TPP). Based on sequential extraction results, TPP maxima exhibited preferential accumulation of an operationally defined class of loosely adsorbed organic phosphorus (P), which may contain a substantial fraction of polyphosphate (poly‐P). This poly‐P may furthermore be involved in the …

Magnitude And Composition Of Sinking Particulate Phosphorus Fluxes In Santa Barbara Basin, California, Emily Sekula‐Wood, Claudia R. Benitez-Nelson, Melissa A. Bennett, Robert Thunell

Faculty Publications

[1] The composition and bioavailability of particulate P influence marine biological community production on both modern and geologic time‐scales, and continental margins play a critical role in the supply, modification, and storage of particulate P. This study examined particulate P cycling in the Santa Barbara Basin (SBB) off the coast of southern California using a ∼520 m deep‐moored sediment trap deployed from 1993–2006 and a sediment core collected in 2005 directly beneath the sediment trap at 590 m. Total particulate P (TPP), particulate inorganic P (PIP), and particulate organic P (POP) were quantified using a 5‐step sequential extraction method (SEDEX) …

The Transcriptome And Proteome Of The Diatom Thalassiosira Pseudonana Reveal A Diverse Phosphorus Stress Response, Sonya T. Dyhrman, Bethany D. Jenkins, Tatiana A. Rynearson, Mak A. Saito, Melissa L. Mercier, Harriet Alexander, Leann P. Whitney, Andrea Drzewianowski, Vladimir V. Bulygin, Erin M. Bertrand, Zhijin Wu, Claudia R. Benitez-Nelson, Abigail Heithoff

Faculty Publications

Phosphorus (P) is a critical driver of phytoplankton growth and ecosystem function in the ocean. Diatoms are an abundant class of marine phytoplankton that are responsible for significant amounts of primary production. With the control they exert on the oceanic carbon cycle, there have been a number of studies focused on how diatoms respond to limiting macro and micronutrients such as iron and nitrogen. However, diatom physiological responses to P deficiency are poorly understood. Here, we couple deep sequencing of transcript tags and quantitative proteomics to analyze the diatom Thalassiosira pseudonana grown under P-replete and P-deficient conditions. A total of …

Tracing The Transport Of Colored Dissolved Organic Matter In Water Masses Of The Southern Beaufort Sea: Relationship With Hydrographic Characteristics, A. Matsuoka, A. Bricaud, Ronald Benner, J. Para, R. Sempéré, L. Prieur, S. Bélanger, M. Babin

Faculty Publications

Light absorption by colored dissolved organic matter (CDOM) [aCDOM(λ)] plays an important role in the heat budget of the Arctic Ocean, contributing to the recent decline in sea ice, as well as in biogeochemical processes. We investigated aCDOM(λ) in the Southern Beaufort Sea where a significant amount of CDOM is delivered by the Mackenzie River. In the surface layer, aCDOM(440) showed a strong and negative correlation with salinity, indicating strong river influence and conservative transport in the river plume. Below the mixed layer, a weak but positive correlation between aCDOM(440) and salinity was observed above the upper halocline, resulting from …

Lorentz Violation And The Higgs Mechanism, Brett David Altschul

Faculty Publications

We consider scalar quantum electrodynamics in the Higgs phase and in the presence of Lorentz violation. Spontaneous breaking of the gauge symmetry gives rise to Lorentz-violating gauge field mass terms. These may cause the longitudinal mode of the gauge field to propagate superluminally. The theory may be quantized by the Faddeev-Popov procedure, although the Lagrangian for the ghost fields also needs to be Lorentz violating.

The Mechanical Properties Of Epoxy Composites Filled With Rubbery Copolymer Grafted Sio2, Jianing Gao, Junting Li, Brian C. Benicewicz, Su Zhao, Henrik Hillborg, Linda S. Schadler

Faculty Publications

This study demonstrated a method for toughening a highly crosslinked anhydride cured DGEBA epoxy using rubbery block copolymer grafted SiO2 nanoparticles. The particles were synthesized by a sequential reversible addition-fragmentation chain transfer (RAFT) polymerization. The inner rubbery block poly(n-hexyl methacrylate) (PHMA) had a glass transition temperature below room temperature. The outer block poly(glycidyl methacrylate) (PGMA) was matrix compatible. A rubbery interlayer thickness of 100% and 200% of the particle core radius was achieved by grafting a 20 kg/mol and a 40 kg/mol PHMA at a graft density of 0.7 chains/nm² from the SiO₂ surface. The 20 kg/mol rubbery …

A Search For Single Photon Events In Neutrino Interactions, C. T. Kullenberg, S. R. Mishra, D. Dimmery, X. C. Tian, D. Autiero, S. Gninenko, A. Rubbia, S. Alekhin, P. Astier, A. Baldisseri, M. Baldo-Ceolin, M. Banner, G. Bassompierre, K. Benslama, N. Besson, I. Bird, B. Blumenfeld, F. Bobisut, J. Bouchez, S. Boyd, Roberto Petti, Et. Al.

Faculty Publications

We present a search for neutrino induced events containing a single, exclusive photon using data from the NOMAD experiment at the CERN SPS where the average energy of the neutrino flux is 25 GeV. The search is motivated by an excess of electron-like events in the 200–475 MeV energy region as reported by the MiniBooNE experiment. In NOMAD, photons are identified via their conversion to e⁺e⁻ in an active target embedded in a magnetic field. The background to the single photon signal is dominated by the asymmetric decay of neutral pions produced either in a coherent neutrino–nucleus …

H2/Ch4 Ratios Cannot Reliably Distinguish Abiotic Vs. Biotic Methane In Natural Hydrothermal Systems, Susan Q. Lang, G. L. Früh-Green, D. S. Kelley, M. D. Lilley, G. Proskurowski, E. P. Reeves

Faculty Publications

No abstract provided.

Photoproduction Of Ammonium In The Southeastern Beaufort Sea And Its Biogeochemical Implications, H. Xie, S. Belanger, G. Song, Ronald Benner, A. Taalba, M. Blais, J. É. Tremblay, M. Babin

Faculty Publications

Photochemistry of dissolved organic matter (DOM) plays an important role in marine biogeochemical cycles, including the regeneration of inorganic nutrients. DOM photochemistry affects nitrogen cycling by converting bio-refractory dissolved organic nitrogen to labile inorganic nitrogen, mainly ammonium (NH₄⁺).During the August 2009 Mackenzie Light and Carbon (MALINA) Program, the absorbed photon-based efficiency spectra of NH₄⁺ photoproduction (i.e. photoammonification) were determined using water samples from the SE Beaufort Sea, including the Mackenzie River estuary, shelf, and Canada Basin. The photoammonification efficiency decreased with increasing wavelength across the ultraviolet and visible regimes and was higher in offshore waters …

A Molecular Perspective On The Ageing Of Marine Dissolved Organic Matter, R. Flerus, O. J. Lechtenfeld, B. P. Koch, S. L. Mccallister, P. Schmitt-Kopplin, Ronald Benner, G. Kattner

Faculty Publications

Dissolved organic matter (DOM) was extracted by solid-phase extraction (SPE) from 137 water samples from different climate zones and different depths along an eastern Atlantic Ocean transect. The extracts were analyzed with Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) with electrospray ionization (ESI). Δ14C analyses were performed on subsamples of the SPE-DOM. In addition, the amount of dissolved organic carbon was determined for all water and SPE-DOM samples as well as the yield of amino sugars for selected samples. Linear correlations were observed between the magnitudes of 43 % of the FT-ICR mass peaks and the extract Δ14C …