Physical Sciences and Mathematics Commons^™

Sedimentology Of A Small Estuarine Marsh Along East (Pensacola) Bay, Florida, Jesse Pfadenhauer

Honors Theses

Sediment samples from a marsh along East (Pensacola) Bay were analyzed using various laboratory techniques. The color, magnetic susceptibility, organic content, carbonate content, and sediment size distribution of each sample was measured to attain an overall profile of the sedimentary characteristics of the area. Using the GPS coordinates of each collection site, samples were categorized into sub-environments based on their position within the marsh. The trends within the study area and sub-environments were evaluated and interpreted. The data indicate that this marsh is a siliciclastic, fining-inland area that is frequently inundated with tidal fluctuations and storm surges. These storm surges …

Protein Residue-Residue Contact Prediction Using Stacked Denoising Autoencoders, Joseph Bailey Luttrell Iv

Honors Theses

Protein residue-residue contact prediction is one of many areas of bioinformatics research that aims to assist researchers in the discovery of structural features of proteins. Predicting the existence of such structural features can provide a starting point for studying the tertiary structures of proteins. This has the potential to be useful in applications such as drug design where tertiary structure predictions may play an important role in approximating the interactions between drugs and their targets without expending the monetary resources necessary for preliminary experimentation. Here, four different methods involving deep learning, support vector machines (SVMs), and direct coupling analysis were …

Automated Data Acquisition Of Deet Time-Dependent Concentration Profiles, Ryan D. Coleman

Honors Theses

Spatial insect repellents must maintain a sufficient concentration in the vapor phase to successfully deter pests. However, little is known regarding correlation of concentration to efficacy nor does there exist a standard testing protocol to measure efficacy in air. Among existing spatial repellents, DEET is the most common active ingredient. This research focuses on application of sensor-based technologies to monitor the concentration levels of DEET under static conditions.

Metal oxide semiconductor sensors feature conductivity variance in response to absorption and desorption of volatile organic compounds. Advantages of these sensors include cost, versatility, and sensitivity. Metal oxide semiconductor sensors were chosen …

Using Intrinsic Properties Of Polyaniline To Sense Expression Of The Microrna Let-7, Jared N. Gloria

Honors Theses

MicroRNAs are approximately 22-nucleotide long RNA molecules that function through decay and translational repression of messenger RNA. The microRNA let-7 is found to play a role in maintaining the fate of differentiated cells in humans. Thus, expression level of this microRNA is a reliable biomarker of tumor cell phenotype. However, there are significant limitations in the current profiling techniques of microRNA. The current methods like northern blotting, microarrays, RT-PCR, or using locked nucleic acid (LNA) for in-situ hybridization are either laborious, semi-quantitative, or expensive. In this research we try to address this issue by developing a fast, specific, and inexpensive …

The Effect Of Acrylic Acid On Ring Formation In Polyacrylonitrile, Elisha Cade Willis

Honors Theses

The addition of comonomers into carbon fiber precursor, polyacrylonitrile (PAN), has shown to have effects on the extent of stabilization and thermal behavior.1 Acrylic Acid (AA) was added at varying initial apparent weight percent and added via semibatch reaction to copolymerize with acrylonitrile to form carbon fiber precursor. Accompanying batch reactions were synthesized for comparison. Degradation was found to be greater in the semibatch reactions although overall was comparable to the batch reactions. Differential scanning calorimetry (DSC) confirmed the addition of higher concentrations of AA into the reaction resulted in a less intense exotherm upon cyclization, along with a greater …

Synthesis And Application Of (R)-3-Methylpyrrolidine-3-Carboylic Acid, Shelby D. Dickerson

Honors Theses

L-Proline is an amino acid widely used in pharmaceutical and biotechnological research due to its catalytic activity and biological relevance. L-Proline has been recognized and utilized as an organocatalyst, which allows cleaner, more sustainable reactions. However, one issue with L-proline is its low solubility in organic systems, limiting its reactivity and efficiency, especially when considering industrial research. Two reactions that utilize L-Proline are the Michael and Aldol but require 100 mol% of L-Proline and 30 mol% of L-Proline, respectively. This research will focus on the synthesis of an analogue of L-Proline utilizing inexpensive, commercially available reagents. A variety of organic …

Applications Of The Sierpiński Triangle To Musical Composition, Samuel C. Dent

Honors Theses

The present paper builds on the idea of composing music via fractals, specifically the Sierpiński Triangle and the Sierpiński Pedal Triangle. The resulting methods are intended to produce not just a series of random notes, but a series that we think pleases the ear. One method utilizes the iterative process of generating the Sierpiński Triangle and Sierpiński Pedal Triangle via matrix operations by applying this process to a geometric configuration of note names. This technique designs the largest components of the musical work first, then creates subsequent layers where each layer adds more detail.

A Chemical Sensor For Cyanide, Rachel E. Lambert

Honors Theses

The cyanide ion and its gaseous form, hydrogen cyanide, are extremely toxic. Cyanide impairs cellular respiration by inhibiting cytochrome c oxidase, an enzyme in the electron transport chain, leading to cell death.

In a previous study, we synthesized an optical sensor that detects cyanide selectively. The aim of this project is to increase the sensitivity of this sensor. This can be achieved by utilizing the unique spectroscopic properties of lanthanide ions.

The lanthanide metal (europium or terbium) was added to a coumarin-glycine chemodosimeter in a DMSO solvent system. The sensor was titrated with several monodentate analytes including, nitrate, octylamine, 1-pentanethiol, …

Momentum Transfer To A Simplified Wind Turbine Blade, Myer D. Milbrath

Honors Theses

This project looks into the potential of simplified simulations as a supplement to wind turbine blade designs. The idea is to take a two-dimensional representation of a wind turbine blade and attempt to use a fluid flow simulation to determine which "aspect ratio" is the most efficient in the transfer of momentum. This is then compared to the current requirements for wind turbine blades to judge how accurate the simulation was. It was found that an aspect ratio of 16.66 percent was most efficient, however when compared to the requirements for a wind turbine blade this ratio only falls into …

Investigation Of How Hydrogen Bonding Affects The Enantiomeric Excess Of Pig Liver Esterase Promoted Hydrolysis Of Pro-Chiral Substrates, Jacob E. Pruett

Honors Theses

Pig Liver Esterase is a cost effective enzyme for ester hydrolysis. In our group, it is vital for creating chiral molecules for the synthesis of unnatural amino acids of potential biological importance. It has been previously found that the enantiomeric excess (%ee) of the PLE hydrolysis reaction increases drastically with the addition of co-solvents that are able to both accept and donate hydrogen bonds. This research endeavors to see if substrates of enhanced hydrogen bonding ability also increase the stereoselectivity of PLE hydrolyses. Diester malonate was covalently linked with a furan ring in both the third and second position from …

Detection Of Acoustic Sources Using Time-Reversal Methods, Grant E. Tingstrom

Honors Theses

The goal of this research is to characterize the impact of using an equivalent-fluid method for a solid seabed on the use of time reversal procedures for detecting the origin location of an emitted sound. There are two different ways of modeling how sound propagates through water: modeling sound as a ray and modeling sound as a wave. It is easier to model the propagation of sound through water with a ray model; using a ray model allows for the collection of grazing angles with respect to the bottom. These will be important when determining bottom intensity loss of the …

Synthesis Of Acceptors For Use In Donor-Acceptor Copolymers And Characterization Of These Polymers, William D. Walker

Honors Theses

In this thesis, a selenium-derivatized acceptor was synthesized to examine the heavy atom effects of selenium on the position of the frontier molecular orbitals (HOMO/LUMO band gap) as opposed to sulfur in a donor-acceptor copolymer for use in light harvesting and detection applications. Over the course of this research, standard operating protocols for ultraviolet-visible (UV-Vis-NIR) and Fourier transform infrared (FT-IR) spectroscopies, as well as cyclic voltammetry (CV) characterization techniques were established. Once synthesized, the polymers were characterized through use of the established characterization protocols. The selenium-derivatized polymer exhibited a bathochromic shift compared to the sulfur analogue, with a solid-state absorption …

Functionalizing Β-Cyano Oligo(P-Phenylene Vinylene) Chromophores For Use In Mechanochromic Materials, Alexander J. Wink

Honors Theses

Mechanochromic materials are materials that change color upon mechanical deformation. This concept can be applied in areas of quality control, since the knowledge of damaged parts will easily be detected due to a color change in the material that has undergone deformation. Typically these types of materials are enabled by employing functional small molecules. Often, these are conjugated organic molecules or chromophores, which fluoresce different colors determined by the stimulus (or lack thereof) acting upon the material. In this work, we explore a new avenue to elicit color changes in polymeric materials based on the process of restriction of intramolecular …