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Articles 1 - 21 of 21
Full-Text Articles in Physical Sciences and Mathematics
Unmasking Deception In Vanets: A Decentralized Approach To Verifying Truth In Motion, Susan Zehra, Syed R. Rizvi, Steven Olariu
Unmasking Deception In Vanets: A Decentralized Approach To Verifying Truth In Motion, Susan Zehra, Syed R. Rizvi, Steven Olariu
College of Sciences Posters
VANET, which stands for "Vehicular Ad Hoc Network," is a wireless network that allows vehicles to communicate with each other and with infrastructure, such as Roadside Units (RSUs), with the aim of enhancing road safety and improving the overall driving experience through real-time exchange of information and data. VANET has various applications, including traffic management, road safety alerts, and navigation. However, the security of VANET can be compromised if a malicious user alters the content of messages transmitted, which can harm both individual vehicles and the overall trust in VANET technology. Ensuring the correctness of messages is crucial for the …
Robots Still Outnumber Humans In Web Archives In 2019, But Less Than In 2012, Himarsha R. Jayanetti, Kritika Garg, Sawood Alam, Michael L. Nelson, Michele C. Weigle
Robots Still Outnumber Humans In Web Archives In 2019, But Less Than In 2012, Himarsha R. Jayanetti, Kritika Garg, Sawood Alam, Michael L. Nelson, Michele C. Weigle
College of Sciences Posters
To identify robots and human users in web archives, we conducted a study using the access logs from the Internet Archive’s (IA) Wayback Machine in 2012 (IA2012), 2015 (IA2015), and 2019 (IA2019), and the Portuguese Web Archive (PT) in 2019 (PT2019). We identified user sessions in the access logs and classified them as human or robot based on their browsing behavior. In 2013, AlNoamany et al. [1] studied the user access patterns using IA access logs from 2012. They established four web archive user access patterns: single-page access (Dip), access to the same page at multiple archive times (Dive), access …
Adhd Prediction Through Analysis Of Eye Movements With Graph Convolution Network, Gavindya Jayawardena, Sampath Jayarathna, Yi He
Adhd Prediction Through Analysis Of Eye Movements With Graph Convolution Network, Gavindya Jayawardena, Sampath Jayarathna, Yi He
College of Sciences Posters
Processing speech with background noise requires appropriate parsing of the distorted auditory signal, fundamental language abilities as well as higher signal-to-noise ratio. Adolescents with ADHD have difficulty processing speech with background noise due to reduced inhibitory control and working memory capacity. In this study we utilize Audiovisual Speech-In-Noise performance and eye-tracking measures of young adults with ADHD compared to age-matched controls, and generate graphs for ADHD evaluation using the eye-tracking data. We form graphs utilizing the eight eye-tracking features (fixation count, average, total, and standard deviation of fixation duration, max and min saccade peak velocity, min, average, and standard deviation …
Ml-Based Surrogates And Emulators, Tareq Alghamdi, Yaohang Li, Nobuo Sato
Ml-Based Surrogates And Emulators, Tareq Alghamdi, Yaohang Li, Nobuo Sato
College of Sciences Posters
No abstract provided.
A Novel Parking Management In Smart City Vehicular Datacenters, Syed Rizvi, Susan Zehra, Steven Olariu
A Novel Parking Management In Smart City Vehicular Datacenters, Syed Rizvi, Susan Zehra, Steven Olariu
College of Sciences Posters
Researchers have shown that most vehicles spend the majority of their time parked in parking garages, lots, or driveways. During this time, their computing resources are unused and untapped. This has led to substantial interest in Vehicular Cloud, an area of research in which each vehicle acts as a computation node. The main difference between traditional cloud computing and vehicular cloud computing is the availability of nodes. In traditional clouds, nodes are available 24/7, while in vehicular clouds, nodes (vehicles) are only available while parked in parking lots. This creates a dynamic environment as vehicles enter and exit parking garages …
Analysis Of Ab Initio Protein Structure Prediction Methods, Maytha Alshammari, Jing He
Analysis Of Ab Initio Protein Structure Prediction Methods, Maytha Alshammari, Jing He
College of Sciences Posters
Protein structure prediction produces atomic models of three-dimensional structure of a protein from its amino acid sequence. Understanding the function mechanism of proteins requires knowledge of three-dimensional structures. When developing new enzymes and drugs, it's essential to understand the structure of the target protein. In this study, we analyze models predicted using two ab initio protein structure prediction methods, trRosetta and Quark. A set of thirty protein chains was used to evaluate the effectiveness of the methods. The thirty chains were collected from Protein Data Bank (June – November, 2020). The length and the relative position of the predicted secondary …
Exploring Human Perception While Reading Fake And Real News Articles, Yasasi Abeysinghe, Gavindya Jayawardana, Autumn Woodson, Efe Bozkir, Enkelejda Kasneci, Andrew Duchowski, Sampath Jayarathna
Exploring Human Perception While Reading Fake And Real News Articles, Yasasi Abeysinghe, Gavindya Jayawardana, Autumn Woodson, Efe Bozkir, Enkelejda Kasneci, Andrew Duchowski, Sampath Jayarathna
College of Sciences Posters
With the increased spread of misinformation on online platforms and the popularity of AI-generated text, there is a critical need to detect human perception regarding the truthfulness of news. Users’ believability in a news item influences the reading and sharing of that news. Hence, in order to reduce the spread of fake news online, it is important to understand how users' engagement with fake and real news and users' perceived believability impact their behavioral and physiological factors. In this work, we study human eye movements based on the truthfulness of news and their perceived believability. Using the publicly available FakeNewsPerception …
Metaenhance: Metadata Quality Improvement For Electronic Theses And Dissertations, Muntabir H. Choudhury, Lamia Salsabil, Himarsha R. Jayanetti, Jian Wu
Metaenhance: Metadata Quality Improvement For Electronic Theses And Dissertations, Muntabir H. Choudhury, Lamia Salsabil, Himarsha R. Jayanetti, Jian Wu
College of Sciences Posters
Metadata quality is crucial for digital objects to be discovered through digital library interfaces. Although DL systems have adopted Dublin Core to standardize metadata formats (e.g., ETD-MS v1.11), the metadata of digital objects may contain incomplete, inconsistent, and incorrect values [1]. Most existing frameworks to improve metadata quality rely on crowdsourced correction approaches, e.g., [2]. Such methods are usually slow and biased toward documents that are more discoverable by users. Artificial intelligence (AI) based methods can be adopted to overcome this limit by automatically detecting, correcting, and canonicalizing the metadata, featuring quick and unbiased responses to document metadata. …
X-Disetrac: Distributed Eye-Tracking With Extended Realities, Bhanuka Mahanama, Sampath Jayarathna
X-Disetrac: Distributed Eye-Tracking With Extended Realities, Bhanuka Mahanama, Sampath Jayarathna
College of Sciences Posters
Humans use heterogeneous collaboration mediums such as in-person, online, and extended realities for day-to-day activities. Identifying patterns in viewpoints and pupillary responses (a.k.a eye-tracking data) provide informative cues on individual and collective behavior during collaborative tasks. Despite the increasing ubiquity of these different mediums, the aggregation and analysis of eye-tracking data in heterogeneous collaborative environments remain unexplored. Our study proposes X-DisETrac: Extended Distributed Eye Tracking, a versatile framework for eye tracking in heterogeneous environments. Our approach tackles the complexity by establishing a platform-agnostic communication protocol encompassing three data streams to simplify data aggregation and …
A Machine Learning Approach To Denoising Particle Detector Observations In Nuclear Physics, Polykarpos Thomadakis, Angelos Angelopoulos, Gagik Gavalian, Nikos Chrisochoides
A Machine Learning Approach To Denoising Particle Detector Observations In Nuclear Physics, Polykarpos Thomadakis, Angelos Angelopoulos, Gagik Gavalian, Nikos Chrisochoides
College of Sciences Posters
With the evolution in detector technologies and electronic components used in the Nuclear Physics field, experimental setups become larger and more complex. Faster electronics enable particle accelerator experiments to run with higher beam intensity, providing more interactions per time and more particles per interaction. However, the increased beam intensities present a challenge to particle detectors because of the higher amount of noise and uncorrelated signals. Higher noise levels lead to a more challenging particle reconstruction process by increasing the number of combinatorics to analyze and background signals to eliminate. On the other hand, increasing the beam intensity can provide physics …
Lattice Optics Optimization For Recirculatory Energy Recovery Linacs With Multi-Objective Optimization, Isurumali Neththikumara, Todd Satogata, Alex Bogacz, Ryan Bodenstein, Arthur Vandenhoeke
Lattice Optics Optimization For Recirculatory Energy Recovery Linacs With Multi-Objective Optimization, Isurumali Neththikumara, Todd Satogata, Alex Bogacz, Ryan Bodenstein, Arthur Vandenhoeke
College of Sciences Posters
Beamline optics design for recirculatory linear accelerators requires special attention to suppress beam instabilities arising due to collective effects. The impact of these collective effects becomes more pronounced with the addition of energy recovery (ER) capability. Jefferson Lab’s multi-pass, multi-GeV ER proposal for the CEBAF accelerator, ER@CEBAF, is a 10- pass ER demonstration with low beam current. Tighter control of the beam parameters at lower energies is necessary to avoid beam break-up (BBU) instabilities, even with a small beam current. Optics optimizations require balancing both beta excursions at high-energy passes and overfocusing at low-energy passes. Here, we discuss an optics …
Analysis Of An Existing Method In Refinement Of Protein Structure Predictions Using Cryo-Em Images, Maytha Alshammari, Jing He, Willy Wriggers, Jiangwen Sun
Analysis Of An Existing Method In Refinement Of Protein Structure Predictions Using Cryo-Em Images, Maytha Alshammari, Jing He, Willy Wriggers, Jiangwen Sun
College of Sciences Posters
Protein structure prediction produces atomic models from its amino acid sequence. Three-dimensional structures are important for understanding the function mechanism of proteins. Knowing the structure of a given protein is crucial in drug development design of novel enzymes. AlphaFold2 is a protein structure prediction tool with good performance in recent CASP competitions. Phenix is a tool for determination of a protein structure from a high-resolution 3D molecular image. Recent development of Phenix shows that it is capable to refine predicted models from AlphaFold2, specifically the poorly predicted regions, by incorporating information from the 3D image of the protein. The goal …
Physics-Informed Neural Networks (Pinns) For Dvcs Cross Sections, Manal Almaeen, Jake Grigsby, Joshua Hoskins, Brandon Kriesten, Yaohang Li, Huey-Wen Lin, Simonetta Liuti, Sorawich Maichum
Physics-Informed Neural Networks (Pinns) For Dvcs Cross Sections, Manal Almaeen, Jake Grigsby, Joshua Hoskins, Brandon Kriesten, Yaohang Li, Huey-Wen Lin, Simonetta Liuti, Sorawich Maichum
College of Sciences Posters
We present a physics informed deep learning technique for Deeply Virtual Compton Scattering (DVCS) cross sections from an unpolarized proton target using both an unpolarized and polarized electron beam. Training a deep learning model typically requires a large size of data that might not always be available or possible to obtain. Alternatively, a deep learning model can be trained using additional knowledge gained by enforcing some physics constraints such as angular symmetries for better accuracy and generalization. By incorporating physics knowledge to our deep learning model, our framework shows precise predictions on the DVCS cross sections and better extrapolation on …
Vaim For Solving Inverse Problems, Manal Almaeen, Yasir Alanazi, Michelle Kuchera, Nobuo Sato, Wally Melnitchouk, Yaohang Li
Vaim For Solving Inverse Problems, Manal Almaeen, Yasir Alanazi, Michelle Kuchera, Nobuo Sato, Wally Melnitchouk, Yaohang Li
College of Sciences Posters
In this work, we propose the Variational Autoencoder Inverse Mapper (VAIM) to solve inverse problems, where there is a demand to accurately restore hidden parameters from indirect observations. VAIM is an autoencoder-based neural network architecture. The encoder and decoder networks approximate the forward and backward mapping, respectively, and a variational latent layer is incorporated into VAIM to learn the posterior parameter distributions with respect to the given observables. VAIM shows promising results on several artificial inverse problems. VAIM further demonstrates preliminary effectiveness in constructing the inverse function mapping quantum correlation functions to observables in a quantum chromodynamics analysis of nucleon …
Analysis Of Reading Patterns Of Scientific Literature Using Eye-Tracking Measures, Gavindya Jayawardena, Sampath Jayarathna, Jian Wu
Analysis Of Reading Patterns Of Scientific Literature Using Eye-Tracking Measures, Gavindya Jayawardena, Sampath Jayarathna, Jian Wu
College of Sciences Posters
Scientific literature is crucial for researchers to inspire novel research ideas and find solutions to various problems. This study presents a reading task for novice researchers using eye-tracking measures. The study focused on the scan paths, fixation, and pupil dilation frequency of the participants. In this study, 3 participants were asked to read a pre-selected research paper while wearing an eye-tracking device (PupilLabs Core 200Hz). We specified sections of the research paper as areas of interest (title, abstract, motivation, methodology, conclusion)to analyze the eye-movements. Then we extracted eye-movements data from the recordings and processed them using an eye-movement processing pipeline. …
Multi-Dimensional Numerical Integration On Parallel Architectures, Ioannis Sakiotis, Marc Paterno, Balsa Terzic, Mohammad Zubair, Desh Ranjan
Multi-Dimensional Numerical Integration On Parallel Architectures, Ioannis Sakiotis, Marc Paterno, Balsa Terzic, Mohammad Zubair, Desh Ranjan
College of Sciences Posters
Multi-dimensional numerical integration is a challenging computational problem that is encountered in many scientific computing applications. Despite extensive research and the development of efficient techniques such as adaptive and Monte Carlo methods, many complex high-dimensional integrands can be too computationally intense even for state-of-the-art numerical libraries such as CUBA, QUADPACK, NAG, and MSL. However, adaptive integration has few dependencies and is very well suited for parallel architectures where processors can operate on different partitions of the integration-space. While existing parallel methods exist, most are simple extensions of their sequential versions. This results in moderate speedup and in many cases failure …
Nanopore Guided Regional Assembly, Eleni Adam, Desh Ranjan, Harold Riethman
Nanopore Guided Regional Assembly, Eleni Adam, Desh Ranjan, Harold Riethman
College of Sciences Posters
The telomeres are the “caps” of the chromosomes and their vital role is to protect them. Possible telomere dysfunction caused by telomere rearrangements can be fatal for the cell and result in age-related diseases, including cancer. The telomeres and subtelomeres are regions that are hard to investigate. The current technology cannot provide their complete sequence, instead the DNA is given in multiple pieces. Current methods of assembling the pieces of these regions are not accurate enough due to the region’s high variability and complex repeated patterns. We propose a hybrid assembly method, the NPGREAT, which utilizes two of the latest …
Combine Cryo-Em Density Map And Residue Contact For Protein Structure Prediction: A Case Study, Maytha Alshammari, Jing He
Combine Cryo-Em Density Map And Residue Contact For Protein Structure Prediction: A Case Study, Maytha Alshammari, Jing He
College of Sciences Posters
Although atomic structures have been determined directly from cryo-EM density maps with high resolutions, current structure determination methods for medium resolution (5 to 10 Å) cryo-EM maps are limited by the availability of structure templates. Secondary structure traces are lines detected from a cryo-EM density map for α-helices and β-strands of a protein. A topology of secondary structures defines the mapping between a set of sequence segments in 1D and a set of traces of secondary structures in 3D. In order to enhance the accuracy in ranking secondary structure topologies, we propose a method that combines three sources of information …
End-To-End Physics Event Generator, Yasir Alanazi, N. Sato, Tianbo Liu, W. Melnitchouk, Michelle P. Kuchera, Evan Pritchard, Michael Robertson, Ryan Strauss, Luisa Velasco, Yaohang Li
End-To-End Physics Event Generator, Yasir Alanazi, N. Sato, Tianbo Liu, W. Melnitchouk, Michelle P. Kuchera, Evan Pritchard, Michael Robertson, Ryan Strauss, Luisa Velasco, Yaohang Li
College of Sciences Posters
We apply generative adversarial network (GAN) technology to build an event generator that simulates particle production in electron-proton scattering that is free of theoretical assumptions about underlying particle dynamics. The difficulty of efficiently training a GAN event simulator lies in learning the complicated pat- terns of the distributions of the particles physical properties. We develop a GAN that selects a set of transformed features from particle momenta that can be generated easily by the generator, and uses these to produce a set of augmented features that improve the sensitivity of the discriminator. The new Feature-Augmented and Transformed GAN (FAT-GAN) is …
Npgreat: Hybrid Assembly Of Human Subtelomeres With The Use Of Nanopore And Linked-Read Datasets, Eleni Adam, Desh Ranjan, Harold Riethman
Npgreat: Hybrid Assembly Of Human Subtelomeres With The Use Of Nanopore And Linked-Read Datasets, Eleni Adam, Desh Ranjan, Harold Riethman
College of Sciences Posters
The telomeres are vitally important regions that are located at the tips of the chromosomes. Their dysfunction, caused by length shortening can lead to senescent cells, which in turn cause age-related diseases, including cancer. The subtelomeres, located next to the telomeres, possess the critical role of regulating the adjacent telomere lengths. Even after many years of research, human subtelomeres have proven to be very hard to assemble due to their morphology. In order to overcome these problems, the hybrid assembly method we develop utilizes two of the latest available types of data, which complement each other: Linked-Reads and ultralong Nanopore …
Cylindrical Similarity Measurement For Helices In Medium-Resolution Cryo-Electron Microscopy Density Maps, Salim Sazzed, Peter Scheible, Maytha Alshammari, Willy Wriggers, Jing He
Cylindrical Similarity Measurement For Helices In Medium-Resolution Cryo-Electron Microscopy Density Maps, Salim Sazzed, Peter Scheible, Maytha Alshammari, Willy Wriggers, Jing He
College of Sciences Posters
Cryo-electron microscopy (cryo-EM) density maps at medium resolution (5-10 Å) reveal secondary structural features such as α-helices and β-sheets, but they lack the side chains details that would enable a direct structure determination. Among the more than 800 entries in the Electron Microscopy Data Bank (EMDB) of medium-resolution density maps that are associated with atomic models, a wide variety of similarities can be observed between maps and models. To validate such atomic models and to classify structural features, a local similarity criterion, the F1 score, is proposed and evaluated in this study. The F1 score is theoretically normalized to a …