Physical Sciences and Mathematics Commons^™

Domain Decomposition Methods For The Solution Of Multiple Scattering Problems, Michael Pedneault

Dissertations

This presents a Schur complement Domain Decomposition (DD) algorithm for the solution of frequency domain multiple scattering problems. Just as in the classical DD methods,(1) the ensemble of scatterers is enclosed in a domain bounded by an artificial boundary, (2) this domain is subdivided into a collection of nonoverlapping subdomains so that the boundaries of the subdomains do not intersect any of the scatterers, and (3) the solutions of the subproblems are connected via Robin boundary conditions matching on the common interfaces between subdomains. Subdomain Robin-to-Robin maps are used to recast the DD problem as a sparse linear system whose …

Storage Systems For Mobile-Cloud Applications, Nafize R. Paiker

Dissertations

Mobile devices have become the major computing platform in todays world. However, some apps on mobile devices still suffer from insufficient computing and energy resources. A key solution is to offload resource-demanding computing tasks from mobile devices to the cloud. This leads to a scenario where computing tasks in the same application run concurrently on both the mobile device and the cloud.

This dissertation aims to ensure that the tasks in a mobile app that employs offloading can access and share files concurrently on the mobile and the cloud in a manner that is efficient, consistent, and transparent to locations. …

Methods To Improve The Remediation Of Polycyclic Aromatic Hydrocarbons (Pahs) In Aerobic And Anaerobic Environments, Brian Wartell

Dissertations

Oil spills occur regularly in terrestrial environments and crude oil can contain many compounds that are highly resistant to degradation. Among these compounds are high levels of polycyclic aromatic hydrocarbons (PAHs) which are not only toxic but can also be carcinogenic and/or mutagenic. The first chapter of this dissertation includes an extensive review chapter on the variables affecting the anaerobic degradation of hydrocarbons, with a particular focus on PAHs. Electron acceptors, electron donors, temperature, salinity, pH all play key roles in determining the possibility effective of effective degradation occurring. Thus, by addressing solutions, such as biostimulation, improving environmental variables for …

High-Speed Data Communications For Vehicular Networks Using Free-Space Optical Communications, Yagiz Kaymak

Dissertations

The demand for high-speed Internet access for vehicles, such as high-speed trains (HSTs) and cars, is on the rise. Several Internet access technologies that use radio frequency are being considered for vehicular networking. Radio-frequency communications technologies cannot provide high data rates due to interference, bandwidth limitations, and the inherent limited data rates of radio technology. Free-space optical communications (FSOC) is an alternative approach and a line-of-sight (LOS) technology that uses modulated light to transfer data between two free-space optical (FSO) transceivers. FSOC systems for vehicular networks are expected to provide data rates in the range of Gbps for stationary and …

Fwer Controlling Procedures In Simultaneous And Selective Inference, Li Yu

Dissertations

With increasing complexity of research objectives in clinical trials, a variety of relatively complex and less intuitive multiple testing procedures (MTPs) have been developed and applied in clinical data analysis. In order to make testing strategies more explicit and intuitive to communicate with non-statisticians, several flexible and powerful graphical approaches have recently been introduced in the literature for developing and visualizing newer MTPs. Nevertheless, some theoretical as well as methodological issues still remain to be fully addressed. This dissertation addresses several important issues arising in graphical approaches and related selective inference problems. It consists of three parts.

In the first …

Functionalized Carbon Nanotubes In Hydrophobic Drug Delivery, Kun Chen

Dissertations

The direct incorporation of carboxylated carbon nanotubes (f-CNTs) into hydrophobic drug particles during their formation via anti-solvent precipitation is presented. The approach is tested using two drugs namely antifungal agent Griseofulvin (GF) and antibiotic Sulfamethoxazole (SMZ) that have very different aqueous solubility. It is observed that the f-CNTs dispersed in the water serve as nucleating sites for crystallization and are readily incorporated into the drug particles without altering crystal structure or other properties. The results show that the hydrophilic f-CNTs dramatically enhance dissolution rate for both drugs. The increased degree of functionalization leads to higher hydrophilicity and therefore faster dissolution …

Deep Learning Methods For Mining Genomic Sequence Patterns, Xin Gao

Dissertations

Nowadays, with the growing availability of large-scale genomic datasets and advanced computational techniques, more and more data-driven computational methods have been developed to analyze genomic data and help to solve incompletely understood biological problems. Among them, deep learning methods, have been proposed to automatically learn and recognize the functional activity of DNA sequences from genomics data. Techniques for efficient mining genomic sequence pattern will help to improve our understanding of gene regulation, and thus accelerate our progress toward using personal genomes in medicine.

This dissertation focuses on the development of deep learning methods for mining genomic sequences. First, we compare …

Polya Db3: A Database Cataloging Polyadenation Sites(Pas) Across Different Species And Their Conservation, Ram Mohan Nambiar

Theses

Polyadenation is an important process occurring in the messenger RNA that involves cleavage of 3 end nascent mRNAs and addition of poly(A) tails. For this thesis,I present PolyA DB3 ,a database cataloging cleavage and polyadenylation sites (PASs) in several genomes specifically for human,mouse,rat and chicken. This database is based on deep sequencing data. PASs are mapped by the 3’ region extraction and deep sequencing (3’READS) method, ensuring unequivocal PAS identification. Large volume of data based on diverse biological samples is used to increase PAS coverage and provide PAS usage information. Strand-specific RNA-seq data were used to extend annotated 3’ ends …

Computational Intelligence In Steganography: Adaptive Image Watermarking, Xin Zhong

Dissertations

Digital image watermarking, as an extension of traditional steganography, refers to the process of hiding certain messages into cover images. The transport image, called marked-image or stego-image, conveys the hidden messages while appears visibly similar to the cover-image. Therefore, image watermarking enables various applications such as copyright protection and covert communication. In a watermarking scheme, fidelity, capacity and robustness are considered as crucial factors, where fidelity measures the similarity between the cover- and marked-images, capacity measures the maximum amount of watermark that can be embedded, and robustness concerns the watermark extraction under attacks on the marked-image. Watermarking techniques are often …

Development Of Flexible Nickel-Zinc And Nickel-Iron Batteries, Xianyang Meng

Dissertations

The fabrication of flexible nickel-zinc batteries using a facile mixing of electroactive components for electrode preparation is presented. Polytetrafluoroethylene (PTFE) is found to be an effective binder by reducing concentration polarization, providing chemical/physical stability and enhancing flexibility. The zinc electrode containing PTFE maintains its original porous morphology even after hundreds of cycles while polymers such as PEO show morphology change. Each component, as well as the assembled flexible cells show desired flexibility and stability even under bending conditions.

The fabrication of flexible nickel-iron batteries using printable composite electrodes embedded with multiwalled carbon nanotubes (CNT) is also presented. All the metal …

Improving K-Nn Search And Subspace Clustering Based On Local Intrinsic Dimensionality, Arwa M. Wali

Dissertations

In several novel applications such as multimedia and recommender systems, data is often represented as object feature vectors in high-dimensional spaces. The high-dimensional data is always a challenge for state-of-the-art algorithms, because of the so-called "curse of dimensionality". As the dimensionality increases, the discriminative ability of similarity measures diminishes to the point where many data analysis algorithms, such as similarity search and clustering, that depend on them lose their effectiveness. One way to handle this challenge is by selecting the most important features, which is essential for providing compact object representations as well as improving the overall search and clustering …

Applications Of Big Knowledge Summarization, Ling Zheng

Dissertations

Advanced technologies have resulted in the generation of large amounts of data ("Big Data"). The Big Knowledge derived from Big Data could be beyond humans' ability of comprehension, which will limit the effective and innovative use of Big Knowledge repository. Biomedical ontologies, which play important roles in biomedical information systems, constitute one kind of Big Knowledge repository. Biomedical ontologies typically consist of domain knowledge assertions expressed by the semantic connections between tens of thousands of concepts. Without some high-level visual representation of Big Knowledge in biomedical ontologies, humans cannot grasp the "big picture" of those ontologies. Such Big Knowledge orientation …

Novel Image Descriptors And Learning Methods For Image Classification Applications, Ajit Puthenputhussery

Dissertations

Image classification is an active and rapidly expanding research area in computer vision and machine learning due to its broad applications. With the advent of big data, the need for robust image descriptors and learning methods to process a large number of images for different kinds of visual applications has greatly increased. Towards that end, this dissertation focuses on exploring new image descriptors and learning methods by incorporating important visual aspects and enhancing the feature representation in the discriminative space for advancing image classification.

First, an innovative sparse representation model using the complete marginal Fisher analysis (CMFA-SR) framework is proposed …

Theoretical Studies Of Photoinduced Dynamics And Topological States In Materials With Strong Electron-Lattice Couplings, Linghua Zhu

Dissertations

First, we study the nonequilibrium dynamics of photoinduced phase transitions in charge ordered (CO) systems with a strong electron-lattice interaction and analyze the interplay between electrons, periodic lattice distortions, and a phonon thermal reservoir. Simulations based on a tight-binding Hamiltonian and Boltzmann equations reveal partially decoupled oscillations of the electronic order parameter and the periodic lattice distortion during CO melting, which becomes more energy efficient with lower photon energy. The cooling rate of the electron system correlates with the CO gap dynamics, responsible for an order of magnitude decrease of the cooling rate upon the gap reopening. The work also …

Survival Analysis Using Archimedean Copulas, Xieyang Jia

Dissertations

This dissertation has three independent parts. The first part studies a variation of the competing risks problem, known as the semi-competing risks problem, in which a terminal event censors a non-terminal event, but not vice versa, in the presence of a censoring event which is independent of these two events. The joint distribution of the two dependent events is formulated under Archimedean copula. An estimator for the association parameter of the copula is proposed, which is shown to be consistent. Simulation shows that the method works well with most common Archimedean copula models.

The second part studies the properties of …

Numerical Simulations Of Thin Viscoelastic Films, Valeria Barra

Dissertations

This dissertation is developed in the field of Computational Fluid Dynamics (CFD) and it focuses on numerical simulations of the dynamics of thin viscoelastic films in different settings. The first part of this dissertation presents a novel computational investigation of thin viscoelastic films and drops, that are subject to the van der Waals interaction force, in two spatial dimensions. The liquid films are deposited on a flat solid substrate, that can have a zero or nonzero inclination with respect to the base. The equation that governs the interfacial dynamics of the thin films and drops is obtained within the long-wave …

Instabilities In Nematic Liquid Crystal Films And Droplets, Michael-Angelo Y.-H. Lam

Dissertations

The dynamics of thin films of nematic liquid crystal (NLC) are studied. Nematic liquid crystals are a type of non-Newtonian fluid with anisotropic viscous effects (due to the shape of the molecules) and elasticity effects (due to interacting electrical dipole moments). Exploiting the small aspect ratio in the geometry of interest, a fourth-order non-linear partial differential equation is used to model the free surface of the thin films. Particular attention is paid to the interplay between the bulk elasticity and the preferred orientation (boundary condition) of NLC molecules at the two interfaces: the substrate and the free surface. This work …

Virtual Smarts - Optimizing The Coalescing Of People For Collective Action Within Urban Communities, Stephen Thomas Ricken

Dissertations

Despite the importance of individuals coming together for social group-activities (e.g., pick-up volleyball), the process by which such groups coalesce is poorly understood, and as a consequence is poorly supported by technology. This is despite the emergence of Event-Based Social Network (EBSN) technologies that are specifically designed to assist group coalescing for social activities. Existing theories focus on group development in terms of norms and types, rather than the processes involved in initial group coalescence. This dissertation addresses this gap in the literature through four studies focusing on understanding the coalescing process for interest-based group activities within urban environments and …

Fluorescent Probes And Functionalized Nanoparticles For Bioimaging: Synthesis, Photophysical Properties And Applications, Xinglei Liu

Dissertations

The development of new organic molecular probes with excellent photophysical properties and high fluorescence quantum yields is of considerable interest to many research areas including one- and two-photon fluorescence microscopy, fluorescence-based sensing methodologies, and cancer therapy. Series of organic linear-/non-linear optical molecules including squaraine derivatives, and fluorene derivatives as well as other bioconjugates are designed and synthesized during the doctoral study for the aim of ion detection (Chapter 5), photo dynamic therapy, and deep-tissue imaging (Chapter 4). These optical probes are capable of absorbing light in the near infrared (NIR) window and thus have deeper penetration and cause less photodamage …

High Performance Cloud Computing On Multicore Computers, Jianchen Shan

Dissertations

The cloud has become a major computing platform, with virtualization being a key to allow applications to run and share the resources in the cloud. A wide spectrum of applications need to process large amounts of data at high speeds in the cloud, e.g., analyzing customer data to find out purchase behavior, processing location data to determine geographical trends, or mining social media data to assess brand sentiment. To achieve high performance, these applications create and use multiple threads running on multicore processors. However, existing virtualization technology cannot support the efficient execution of such applications on virtual machines, making them …

Experiments And Multi-Field Modeling Of Inelastic Soft Materials, Shuolun Wang

Dissertations

Soft dielectrics are electrically-insulating elastomeric materials, which are capable of large deformation and electrical polarization, and are used as smart transducers for converting between mechanical and electrical energy. While much theoretical and computational modeling effort has gone into describing the ideal, time-independent behavior of these materials, viscoelasticity is a crucial component of the observed mechanical response and hence has a significant effect on electromechanical actuation. This thesis reports on a constitutive theory and numerical modeling capability for dielectric viscoelastomers, able to describe electromechanical coupling, large- deformations, large-stretch chain-locking, and a time-dependent mechanical response. This approach is calibrated to the widely-used …

Kinetic Study Of Free Radical-Radical Reactions Of Combustion Importance At Elevated Pressures, Chao Yan

Dissertations

Combustion mechanisms consist of hundreds elementary reactions of free radicals and stable molecules. Radical-radical elementary reactions play important roles due to the high concentration in which free radicals are accumulated in combustion systems. Radical-radical reactions are typically multi-channel. Some of the channels might be of chain propagation or even chain branching nature, while other channels might be of chain termination nature. The relative importance of different channels is pressure dependent. Compared to radical-molecule reactions, radical-radical reactions are much less studied. This is due to the difficulties of well characterized quantitative production of radical species as well as due to the …

Detecting And Characterizing Self Hiding Behavior In Android Applications, Raina Samuel

Theses

Applications (apps) that conceal their activities are fundamentally deceptive; app marketplaces and end-users should treat such apps as suspicious. However, due to its nature and intent, activity concealing is not disclosed up-front, which puts users at risk. This study focuses on characterization and detection of such techniques, e.g., hiding the app or removing traces, known as 'self hiding' (SH) behavior. SH behavior has not been studied per se - rather it has been reported on only as a byproduct of malware investigations. This gap is addressed via a study and suite of static analyses targeted at SH in Android apps. …

Structural Studies To Determine The Mechanisms Supporting Multiferroic And Ferroelectric Properties Of Complex Oxides, Han Zhang

Dissertations

Multiferroics are a class of materials which possess both magnetic and electrical polarization with possible coupling between them. They show promise to enable new sensors and data storage devices with novel features, such as the possibility of writing polarization bits with magnetic fields at low power. The coexisting magnetic and ferroelectric order parameters are usually weakly coupled, preventing practical use. The development and study of new classes of materials with large magnetoelectric couplings is of high importance. Understanding the structure of these materials is key to this effort.

As one class of these systems, the RX3(BO₃)₄ has …

Hypoxic And Viral Contributions To The Etiopathogenesis Of Schizophrenia: A Whole Transcriptome Analysis, Kathryn A. Gorski

Theses

Schizophrenia is a mental illness with a complex and as of yet unclear etiology. It is highly heritable and has a strong polygenic character, however, studies examining the genetics of schizophrenia have not sufficiently explained all variability in its prevalence. Environmental causes are theorized to have a non trivial contribution to the pathoetiology of schizophrenia, including interactions with genetic components, but these mechanisms remain unclear. Analyzing schizophrenia dysfunction using transcriptomic approaches is a paradigm still in its infancy, and fewer studies still have examined non neurological contributions to schizophrenia pathology with next generation sequencing technologies. This pilot study uses several …

Supporting User Evaluation Of Messaging Interactions With Potential Romantic Partners Discovered Online, Douglas Zytko

Dissertations

Online dating systems have transformed the way people pursue romance. To arrive at a decision to meet for a face-to-face date, users gather information about each other online pertinent to romantic attraction. Yet sometimes they discover on the date that they made the wrong choice. One aspect of online dating system-use that may be a contributing factor, but is largely overlooked in the literature, is interaction through text-based messaging interfaces. This dissertation explores how messaging interactions inform face-to-face meeting decisions through two qualitative studies, and explores through a mixed methods field study how innovative messaging interfaces that embody theory from …

Passive Planar Terahertz Retroreflectors, Dhruvkumar Desai

Theses

As the application of the Terahertz (THz) band (0.1 - 10 THz) is investigated in various settings, wireless communication stands out as an important frontier to explore. The benefits of increased bandwidth and data rates it promises will only be realized if new technology is developed to support it. Specifically, since THz wireless communication links are typically line-of-sight (LoS), the LoS can be blocked by moving obstacles, thereby requiring alternative link paths. One proposed solution for indoor wireless communications involves systems of steerable antennas, reflective "wallpaper", and steerable mirrors which would redirect THz beams around a blocking obstacle.

As an …