Physical Sciences and Mathematics Commons^™

Fresh: Fair And Efficient Slot Configuration And Scheduling For Hadoop Clusters, Jiayin Wang, Yi Yao, Ying Mao, Bo Sheng, Ningfang Mi

Department of Computer Science Faculty Scholarship and Creative Works

Hadoop is an emerging framework for parallel big data processing. While becoming popular, Hadoop is too complex for regular users to fully understand all the system parameters and tune them appropriately. Especially when processing a batch of jobs, default Hadoop setting may cause inefficient resource utilization and unnecessarily prolong the execution time. This paper considers an extremely important setting of slot configuration which by default is fixed and static. We proposed an enhanced Hadoop system called FRESH which can derive the best slot setting, dynamically configure slots, and appropriately assign tasks to the available slots. The experimental results show that …

Geochemical Tracers Of Holocene Environmental Change Along The East Antarctic Margin, Natalie Romanoff

Theses, Dissertations and Culminating Projects

Marine sediment geochemistry targeting both organic and inorganic compounds can be used for the reconstruction of paleoenvironmental conditions. Part 1 of this study was a qualitative organic geochemical analysis implemented on sediment cores from the Antarctic Peninsula (AP) and East Antarctic Margin (EAM). Intervals of organic or diatomaceous rich sediment were analyzed by Pyrolysis-Gas Chromatography/Mass Spectroscopy (Py-GC/MS) with the goal of identifying soft-bodied algae responsible for elevated wt% carbon levels in horizons where diatoms are absent, and identifying the presence of methanogens in basins where cold seeps are likely to be present. The identification of biomarkers in Antarctic sediment was …

Contribution Of Multidomain Titanomagnetite To The Intensity And Stability Of Mars Crustal Magnetic Anomalies, Stefanie A. Brachfeld, David Cuomo, Lisa Tatsumi-Petrochilos, Julie A. Bowles, Deepa Shah, Julia Hammer

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Two basalts with compositions relevant to the crusts of Mars and Earth were synthesized at igneous temperatures and held at 650°C for 21 to 257 days under quartz‐fayalite‐magnetite fO2 buffer conditions. The run products are germane to slowly cooled igneous intrusions, which might be a significant volumetric fraction of the Martian crust and carriers of magnetic anomalies in the Southern Highlands. Both basalts acquired intense thermoremanent magnetizations and intense but easily demagnetized anhysteretic remanent magnetizations carried by homogeneous multidomain titanomagnetite. Hypothetical intrusions on Mars composed of these materials would be capable of acquiring intense remanences sufficient to generate the …

Multi-Messenger Search For Sources Of Gravitational Waves And High-Energy Neutrinos: Initial Results For Ligo-Virgo And Icecube, M. G. Aartsen, M. Ackermann, J. Adams, J. A. Aguilar, M. Ahlers, M. Ahrens, D. Altmann, Marc Favata, Shaon Ghosh, Rodica Martin

Department of Physics and Astronomy Faculty Scholarship and Creative Works

We report the results of a multimessenger search for coincident signals from the LIGO and Virgo gravitational-wave observatories and the partially completed IceCube high-energy neutrino detector, including periods of joint operation between 2007-2010. These include parts of the 2005-2007 run and the 2009-2010 run for LIGO-Virgo, and IceCube's observation periods with 22, 59 and 79 strings. We find no significant coincident events, and use the search results to derive upper limits on the rate of joint sources for a range of source emission parameters. For the optimistic assumption of gravitational-wave emission energy of 10-2M c2 at ∼150Hz with ∼60ms duration, …

Implementation Of An F-Statistic All-Sky Search For Continuous Gravitational Waves In Virgo Vsr1 Data, J. Aasi, B. P. Abbott, R. Abbott, T. Abbott, M. R. Abernathy, T. Accadia, F. Acernese, Marc Favata, Shaon Ghosh, Rodica Martin

Department of Physics and Astronomy Faculty Scholarship and Creative Works

We present an implementation of the F-statistic to carry out the first search in data from the Virgo laser interferometric gravitational wave detector for periodic gravitational waves from a priori unknown, isolated rotating neutron stars. We searched a frequency f0 range from 100 Hz to 1 kHz and the frequency dependent spindown f1 range from -1.6(f0/100 Hz) ×10-9 Hz s?1 to zero. A large part of this frequencyspindown space was unexplored by any of the all-sky searches published so far. Our method consisted of a coherent search over two-day periods using the F-statistic, followed by a search for coincidences among …

Magnetoviscous Effects Of Magnetized Particle Threads In Magnetized Ferrofluid, Alexander Francis Cali

Theses, Dissertations and Culminating Projects

The magnetoviscous effect of applied fields on ferrofluids has been utilized in many applications in which the ferrofluid must remain in a fixed position while this effect on ferrofluids in motion has yet to be rigorously explored. In light of potential biomedical applications such as drug targeting, experiments were conducted to probe the rheology of ferrofluids on the micrometer scale. A non-conducting glass sphere of diameter 550 μm is dropped into a cylindrical container of magnetized ferrofluid of inner diameter 5.2 mm. This was repeated for two applied field strengths (980 gauss and 480 gauss) and over multiple angles with …

Testing Predicted Specificity Determinants In The Dihydrofolate Reductase Enzyme Family, Seema J. Patel

Theses, Dissertations and Culminating Projects

Dihydrofolate Reductase (DHFR) is an essential enzyme for most organisms, ranging from bacteria to humans. DHFR has essential functions in DNA biosynthesis and cell replication; as a result, cell growth can be inhibited by the inhibition of DHFR. Evaluating the use of well-known DHFR inhibitors is becoming essential in treating infections in the developing world as DHFR is a known target of antibacterial and antiparasitic drugs. Understanding determinants of DHFR inhibitor specificity in terms of amino acid sequence and structure will allow repurposing or designing of new compounds that selectively target DHFR from the pathogenic organism of interest over the …

Search For Gravitational Waves Associated With Γ-Ray Bursts Detected By The Interplanetary Network, J. Aasi, B. P. Abbott, R. Abbott, T. Abbott, M. R. Abernathy, F. Acernese, K. Ackley, Marc Favata, Shaon Ghosh, Rodica Martin

Department of Physics and Astronomy Faculty Scholarship and Creative Works

We present the results of a search for gravitational waves associated with 223 γ-ray bursts (GRBs) detected by the InterPlanetary Network (IPN) in 2005-2010 during LIGO's fifth and sixth science runs and Virgo's first, second, and third science runs. The IPN satellites provide accurate times of the bursts and sky localizations that vary significantly from degree scale to hundreds of square degrees. We search for both a well-modeled binary coalescence signal, the favored progenitor model for short GRBs, and for generic, unmodeled gravitational wave bursts. Both searches use the event time and sky localization to improve the gravitational wave search …

Methods And Results Of A Search For Gravitational Waves Associated With Gamma-Ray Bursts Using The Geo 600, Ligo, And Virgo Detectors, J. Aasi, B. P. Abbott, R. Abbott, T. Abbott, M. R. Abernathy, F. Acernese, K. Ackley, Marc Favata, Shaon Ghosh, Rodica Martin

Department of Physics and Astronomy Faculty Scholarship and Creative Works

In this paper we report on a search for short-duration gravitational wave bursts in the frequency range 64 Hz-1792 Hz associated with gamma-ray bursts (GRBs), using data from GEO 600 and one of the LIGO or Virgo detectors. We introduce the method of a linear search grid to analyze GRB events with large sky localization uncertainties, for example the localizations provided by the Fermi Gamma-ray Burst Monitor (GBM). Coherent searches for gravitational waves (GWs) can be computationally intensive when the GRB sky position is not well localized, due to the corrections required for the difference in arrival time between detectors. …

Search For Gravitational Radiation From Intermediate Mass Black Hole Binaries In Data From The Second Ligo-Virgo Joint Science Run, J. Aasi, B. P. Abbott, R. Abbott, T. Abbott, M. R. Abernathy, T. Accadia, F. Acernese, Marc Favata, Shaon Ghosh, Rodica Martin

Department of Physics and Astronomy Faculty Scholarship and Creative Works

This paper reports on an unmodeled, all-sky search for gravitational waves from merging intermediate mass black hole binaries (IMBHB). The search was performed on data from the second joint science run of the LIGO and Virgo detectors (July 2009-October 2010) and was sensitive to IMBHBs with a range up to ∼200Mpc, averaged over the possible sky positions and inclinations of the binaries with respect to the line of sight. No significant candidate was found. Upper limits on the coalescence-rate density of nonspinning IMBHBs with total masses between 100 and 450M and mass ratios between 0.25 and 1 were placed by …

The Ninja-2 Project: Detecting And Characterizing Gravitational Waveforms Modelled Using Numerical Binary Black Hole Simulations, J. Aasi, B. P. Abbott, R. Abbott, T. Abbott, M. R. Abernathy, T. Accadia, F. Acernese, Marc Favata, Shaon Ghosh, Rodica Martin

Department of Physics and Astronomy Faculty Scholarship and Creative Works

The Numerical INJection Analysis (NINJA) project is a collaborative effort between members of the numerical relativity and gravitational-wave (GW) astrophysics communities. The purpose of NINJA is to study the ability to detect GWs emitted from merging binary black holes (BBH) and recover their parameters with next-generation GW observatories. We report here on the results of the second NINJA project, NINJA-2, which employs 60 complete BBH hybrid waveforms consisting of a numerical portion modelling the late inspiral, merger, and ringdown stitched to a post-Newtonian portion modelling the early inspiral. In a 'blind injection challenge' similar to that conducted in recent Laser …

Search For Gravitational Wave Ringdowns From Perturbed Intermediate Mass Black Holes In Ligo-Virgo Data From 2005-2010, J. Aasi, B. P. Abbott, R. Abbott, T. Abbott, M. R. Abernathy, F. Acernese, K. Ackley, Marc Favata, Shaon Ghosh, Rodica Martin

Department of Physics and Astronomy Faculty Scholarship and Creative Works

We report results from a search for gravitational waves produced by perturbed intermediate mass black holes (IMBH) in data collected by LIGO and Virgo between 2005 and 2010. The search was sensitive to astrophysical sources that produced damped sinusoid gravitational wave signals, also known as ringdowns, with frequency 50≤f0/Hz≤2000 and decay timescale 0.0001 τ/s 0.1 characteristic of those produced in mergers of IMBH pairs. No significant gravitational wave candidate was detected. We report upper limits on the astrophysical coalescence rates of IMBHs with total binary mass 50≤M/M ≤450 and component mass ratios of either 1:1 or 4:1. For systems with …

On The Effect Of Temperature And Pressure Gradient On The Flow Of Non-Homogeneous Fluids, Joseph Anthony Fiordilino

Theses, Dissertations and Culminating Projects

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Geometrical Prediction Models Of Visceral Adipose Tissue, Robert Cowell Moore

Theses, Dissertations and Culminating Projects

Objective: Trunk shape is a known predictor of amounts of visceral adipose tissue (VAT). The amount of total adipose tissue in the abdomen also predicts visceral adipose tissue mass but it is unknown how much of VAT can be attributed to abdominal shape versus size. Using two new measures derived from external measures such as hip circumference and waist circumference, we investigated how shape and adiposity along with demographic covariates are related to amounts of visceral adipose tissue. These new measures are known as Trunk Shape and Trunk Size. These measures were then used to develop models that predicted the …

Spatial Decision Support Systems For Sustainable Urban Redevelopment, Amy V. Johnson-Ferdinand

Theses, Dissertations and Culminating Projects

A recent United Nations study concludes that worldwide population will grow from approximately 7 billion today to 9.3 billion in 2050 and 10.1 billion in 2100. Nowhere is this population growth more evident than in the major cities of the world. For the first time in history, a majority of the world’s people lived in cities. In 1950, by comparison, less than 30% of the world’s population dwelled in cities. This rapid growth of population, coupled with an aging infrastructure, and the abandoning of urban manufacturing sites, creates an urgent need for inner city revitalization. There are several urban areas …

Characterization Of Eocene-Oligocene Depocenters In Prydz Bay, East Antarctica : A Lithostratigraphic Correlation Of Odp Sites 739, 742, And 1166, Daniel James Ciarletta

Theses, Dissertations and Culminating Projects

The Eocene-Oligocene transition (EOT) marked a profound shift in the Earth’s climate, as the global greenhouse o f the early Cenozoic gave way to ‘icehouse’ conditions, or a climatic regime influenced by the waxing and waning o f glacial ice. Antarctica was dramatically altered during this time; its formerly cool temperate ecosystems nearly obliterated by the first major episode o f continental glaciation. A record o f this transition appears to be partly preserved in approximately half a kilometer o f sediments recovered from three holes (at ODP Sites 739, 742, and 1166) bored in the continental margin at Prydz …

The Role Of Stress-Activated Protein Kinases In Parasites, Tamara Kreiss

Theses, Dissertations and Culminating Projects

Lymphatic filariasis and leishmaniasis are neglected tropical diseases that are caused by nematode and protozoal parasites. These diseases cause disfiguration, leaving their host socially marked, and in some cases cause more severe disease that can lead to death. These infections, which tend to persist for long periods of time, also lead to bacterial and fungal co-infections, which further exacerbate the disease. Currently there are insufficient treatment options. Current therapies are often too expensive, have toxicity associated with them and are subjected to growing resistance amongst parasite populations. In this thesis I investigated two potential drug targets. The first, is the …

Geothermobarometry Of Cordierite-Bearing Metapelites Of The Hudson Highlands, Southeastern Ny, Jay Patel

Theses, Dissertations and Culminating Projects

Various P-T determinations have been reported on metasedimentary rock suites in the New Jersey and Hudson Highlands using different geothermobarometers, but all have yielded relatively large P-T ranges and none have used cordierite in a quantitative way. The presence of variable cordierite and its narrow stability field in metapelitic gneisses provides an excellent opportunity to better constrain the peak P-T conditions. Calcium depleted, clay-rich, arkosic sedimentary protolith was deposited during the Mesoproterozoic in a continentaloceanic arc basin during the Elzevirian orogeny (~1300-1200 Ma). The Ottawan metamorphic event (~1090-1020 Ma) transformed this protolith into the metasedimentary unit exposed in the Hudson …

Chemically Catalyzed Phytoremediation Of 2,4,6-Trinitrotoluene (Tnt) Contaminated Soil By Vetiver Grass (Chrysopogon Zizanioides L.), Padmini Das

Theses, Dissertations and Culminating Projects

Urban sprawl in big cities often encroaches on military land, where residual toxic explosive compounds like 2, 4, 6-trinitrotoluene (TNT) in soil could pose a serious health risk. Additionally, in demilitarized areas, lack of sustainable remediation techniques hinder the much needed residential development.. Phytoremediation is an environmentally safe and cost effective solution; however, the characterized low aqueous solubility of nitroaromatic compounds resulting in limited availability of TNT for plant uptake is a major constraint. To overcome this limitation, we propose a new innovative phytoremediation technique using urea, a common nitrogen fertilizer, as a chaotropic agent, to enhance the solubility of …

The Effectiveness Of Venue Strategies For Environmental Communication In Non-Agricultural, School Integrated Pest Management Campaigns, Marcia L. Anderson

Theses, Dissertations and Culminating Projects

Pesticides have become a preferred approach to controlling pest problems in many, schools and childcare centers, despite the exposure hazards to children and the environment. The only other place where children spend more time is in their homes. Children are continually and unknowingly exposed to pests and pesticides while in and around school buildings. Pesticides are used on athletic fields, play areas, in cafeterias, classrooms, and more. Reducing the use of pesticides from the school environment is critical to lowering children’s total exposure.

This research tests ways of communicating about Integrated Pest Management to a number of school-related target audiences. …

Quantitative Literacy And High School Mathematics : The Evolution Of A Collaboratively Constructed Course And Its Impact On Students' Attitudes And Numeracy, Mark Francis Russo

Theses, Dissertations and Culminating Projects

This study describes a practitioner action research project in which I co-constructed a high school mathematics elective course with my students. The focus of the course was on developing students’ quantitative literacy. I examined the impact of the coconstruction process on the evolution of the course, analyzed how the course influenced students’ quantitative literacy and attitudes about mathematics, and reflected on some of the lessons I learned about making mathematics more relevant for my students. This study fills a gap in the literature by describing the impact of a quantitative literacy course at the high school level and by documenting …

Antecedents Of Environmentally Sensitive Consumer Behaviors : An Investigation Of Goal Framing Theory, Naz Onel

Theses, Dissertations and Culminating Projects

Human behavior strongly impacts environmental quality. Altering behaviors that significantly affect the well-being of the environment can reduce the impact of human actions in a way that could help overcome environmental deterioration. However, this requires understanding the factors affecting consumer behavior towards acting in a more ecologically conscious manner. Further, the effects of these factors could vary based on the different types of consumer behaviors, such as environmentally sensitive purchase (acquisition), usage, and post-use (disposal) behaviors. The purpose of this dissertation is to analyze the predicting factors of different types of environmentally sensitive consumer behavior by examining the extent to …

Elucidation Of The Substrate Recognition Mechanism Of Vccry1, Rohe Ahmad

Theses, Dissertations and Culminating Projects

Vibrio cholerae cryptochrome 1 (VcCryl), a DNA repair enzyme, uses a lightdriven electron transfer to repair UV damaged single strand DNA but not double strand DNA. VcCryl has an active site FAD which is required for substrate binding and repair. Size exclusion chromatography (SEC) was used to observe changes in oligomer structure when changes in the oxidation state of the FAD cofactor were made. SEC studies found the oxidized state exists as a dimer with an observed mass of 163 kDa in solution, in dynamic equilibrium with a 67 kDa fragment. The reduced state exists as a monomer in …

Modeling Groundwater Flow At A Hydraulic Fracturing Site Near Pavillion, Wyoming, David Colombini

Theses, Dissertations and Culminating Projects

This thesis uses the GIS-conceptual model approach to create groundwater models investigating groundwater contamination near Pavillion, Wyoming. This area was part of a study by the US Environmental Protection Agency (EPA) in 2009 that claims domestic water well contamination originated from hydraulically fractured natural gas wells. Hydraulic fracturing is the process of injecting water, sand, and chemicals into gas and oil wells in order to stimulate well production. This has caused concern over groundwater contamination. The models show natural groundwater flow systems generally move from west to east, however, a recharge area near the center of the model locally disrupts …

Modeling Magnetic Separation Of Oil Spill Clean Up To Enhance Virtual Laboratory Learning In The Classroom, Kofi James

Theses, Dissertations and Culminating Projects

This thesis links an applied mathematics study of oil spill cleanup to a mathematics education study of the efficacy of virtual laboratory activities in physical and mathematical sciences. Oil spills will be investigated using a multi-phase Navier-Stokes Direct Numerical Simulation (DNS) code for magnetic fluids, also known as ferrofluids. Simulations model cases that are not possible to study in a laboratory experiment or in the real world. Simulation results show that scaling up this process involves fluid mechanical obstacles and that real world effects, such as seawater contamination, will also impact cleanup effectiveness. A physics laboratory classroom curriculum based on …

Summer River Water Temperature Changes In The Musconetcong River And Their Potential Impact On Aquatic Habitat, Joseph Anthony Kowalski

Theses, Dissertations and Culminating Projects

Water temperature changes in rivers can happen quickly for multiple reasons, and can drastically impact the river in many ways. The potential for temperature shifts to impact rivers is especially important in the summer, for aquatic habitats, as the warm temperatures can stress populations. This is especially true for trout populations, a temperature-sensitive fish. Since temperature is the most important factor in the growth of trout, these temperature changes can be life threatening. Therefore it is important to monitor temperatures in the Musconetcong River, classified as trout maintenance waters (Musconetcong Advisory Committee et al., 2003), because of the potential negative …

Geochemistry And Protolith Determination Of The Hypersthene-Quartz-Oligoclase Gneiss From The Hudson Highlands, New York, Kathleen Miller

Theses, Dissertations and Culminating Projects

The hypersthene-quartz-oligoclase gneiss of the Hudson Highlands, NY mapped by Dodd (1965) has been of unknown origin due to complex field relations resulting from metamorphism and deformation during the Ottawan Orogeny, and a lack of geochemical data. The rock types in the Hudson Highlands and New Jersey Highlands are grouped into four general categories: metasedimentary gneisses, metaigneous gneisses, quartzofeldspathic gneisses, and syn-tectonic intrusive granitoid rocks (Dodd, 1965). Major element geochemistry and mineralogy of the Losee Metamorphic Suite of the physically contiguous New Jersey Highlands is similar to that of the hypersthene-quartzoligoclase gneiss of the Hudson Highlands. Based on the high …

Changes In The Discharge Characteristics Of The Hudson River, Elen Kenny Teo

Theses, Dissertations and Culminating Projects

The Hudson River watershed has undergone significant urbanization in some areas and reforestation in others during the past century. The watershed has also recently experienced extreme flood events, including from Hurricane Irene, which caused 49 deaths and an estimated $15.8 billion in damage nationally. However, it is unclear how much changes in land use and/or climate have caused shifts in river discharge and the contributions of runoff and baseflow to the river. Determining the existence and magnitude of these shifts are important for managing water resources. This study analyzes changes in daily flows and maximum annual discharge events at multiple …

Partial Colorings Of Graphs, Matthew Jakubowski

Theses, Dissertations and Culminating Projects

Recently, there has been great interest in counting the number of homomorphisms from a graph G into a fixed image graph H. For this thesis, we let H be a complete graph on three vertices with exactly one looped vertex. Homomorphisms from a graph G to this H correspond to partial proper two-colorings of the vertices of G. We are mainly interested in finding which graphs maximize the number of partial two-colorings given a graph with n vertices and m edges. The general result is given for all graphs with m < n -1 as well as basic enumerative results for some very common graphs.

Late Pliocene Ice-Rafted Debris Mass Accumulation Rates From Iodp Site U1359, Wilkes Land Continental Rise, Antarctica, Jessica Rosenberg

Theses, Dissertations and Culminating Projects

An assessment of sediments taken from the IODP (Integrated Ocean Drilling Program) Expedition 318, Core U1359A from the Wilkes Continental Land Rise, has been conducted at a high resolution to determine the response of the East Antarctic Ice Sheet to climate during the Late Pliocene. The section of core being studied dates back to ~3.7 to 2.7 million years ago (Ma). Studies can lead to an understanding of climate change in the future, from knowledge on how ice sheets have transformed in the past with similar atmospheric conditions to the present. Samples from this record were analyzed based on the …