Physical Sciences and Mathematics Commons^™

The Toll Of Toxics: Investigating Environmental Contaminants, Donald Sparling, Barnett A. Rattner, John S. Barclay

United States Geological Survey: Staff Publications

Two recent events [the Deepwater Horizon oil spill and the Asarco settlement] bring to the fore the work of wildlife toxicologists. Focusing on amphibians, reptiles, birds, and mammals, wildlife toxicology is a component of ecotoxicology--the study of toxic effects caused by natural or synthetic pollutants on living organisms and other constituents of ecosystems (Truhaut 1977). Now a distinct discipline within the wildlife profession-practiced by members of The Wildlife Society's own Wildlife Toxicology Working Group, among others-wildlife toxicology has become increasingly important as human populations and industry have spread, causing contaminants to multiply.

Emerging Environmental Contaminants (EECs) include an array of …

Mississippi Canyon 252 Incident Nrda Tier 1 For Deepwater Communities, Gregory Boland, Gary Brewer, Erik Cordes, Amanda Demopoulos, Chuek Fisher, Chris German, Ken Sulak

United States Geological Survey: Staff Publications

The northern Gulf of Mexico (GOM) is geologically diverse basin, described as the most complex continental slope region in the world. Regional topography of the slope consists of basins, knolls, ridges, and mounds derived from the dynamic adjustments of salt and the introduction of large volumes of sediment over long time scales. More than 99% of the sea floor in the GOM consists of soft sediment made up of various mixtures of primarily silt and clay. These wide-spread soft bottom communities are described in reports from major MMS studies by Gallaway et al. (1998) and Rowe and Kennicutt (2009). Relative …

Establishment And Partial Characterization Of A Cell Line From Burbot Lota Lota Maculosa: Susceptibility To Ihnv, Ipnv And Vhsv, Mark P. Polinski, John D. Drennan, William N. Batts, Susan C. Ireland, Kenneth D. Cain

United States Geological Survey: Staff Publications

This study describes the development and partial characterization of a continuous fibroblastic-like cell line (BEF-1) developed from late stage embryos of North American burbot Lota lota maculosa. This cell line has been maintained for over 5 yr and 100 passages in vitro. Cells were cultured using Eagle’s minimum essential medium with Earle’s salts (MEM) supplemented with GlutaMAX ™, and 10% fetal bovine serum (FBS), pH 7.4. The addition of penicillin-streptomycinneomycin (PSN) antibiotic mixture (0.05, 0.05, 0.1 mg ml–1, respectively) did not negatively influence cell replication; however, the antimycotic Fungizone™ (2.5 μg ml–1, amphotericin B) caused cell rounding and …

Geochemical And Mineralogical Evidence For Sahara And Sahel Dust Additions To Quaternary Soils On Lanzarote, Eastern Canary Islands, Spain, Daniel R. Muhs, James Budahn, Gary Skipp, Joseph M. Prospero, Deanna Patterson, E. Arthur Bettis Iii

United States Geological Survey: Staff Publications

Africa is the most important source of dust in the world today, and dust storms are frequent on the nearby Canary Islands. Previous workers have inferred that the Sahara is the most important source of dust to Canary Islands soils, with little contribution from the Sahel region. Soils overlying a late Quaternary basalt flow on Lanzarote, Canary Islands, contain, in addition to volcanic minerals, quartz and mica, exotic to the island!s bedrock. Kaolinite in the soils also likely has an exotic origin. Trace-element geochemistry shows that the soils are derived from varying proportions of locally derived basalt and African dust. …

Tree-Ring Dates And Demographic Change In The Southern Colorado Plateau And Rio Grande Regions, Michael S. Berry, Larry Benson

United States Geological Survey: Staff Publications

In this chapter, tree-ring dates from the southern Colorado Plateau, Mogollon Highlands, and Rio Grande areas (fig. 3-1) (hereafter referred to as the study area) are used to estimate regional-scale timber-harvesting and construction activities between AD 600 and 1600 (the Basketmaker III through Pueblo IV periods). Within that time span, we focus our attention particularly on the AD 1045-1300 period, a time when anomalously wet periods alternated with megadroughts (fig. 3.2). Treering- date distributions (histograms) for eight archaeological subregions within the study area have been created using a database of more than twenty-four thousand tree-ring dates from archaeological sites. These …

Enhanced Late Holocene Enso/Pdo Expression Along The Margins Of The Eastern North Pacific, John A. Barron, Lesleigh Anderson

United States Geological Survey: Staff Publications

Pacific climate is known to have varied during the Holocene, but spatial patterns remain poorly defined. This paper compiles terrestrial and marine proxy data from sites along the northeastern Pacific margins and proposes that they indicate 1) suppressed ENSO conditions during the middle Holocene between ~8000 and 4000 cal BP with a North Pacific that generally resembled a La Niña-like or more negative PDO phase and 2) a climate transition between ~4200 and 3000 cal BP that appears to be the teleconnected expression to a more modern-like ENSO Pacific. Compared to modern day conditions, the compiled data suggest that during …

Heat Flow And Hydrologic Characteristics At The And-1b Borehole, Andrill Mcmurdo Ice Shelf Project, Antarctica, Roger H. Morin, Trevor Williams, Stuart A. Henrys, Diana Magens, Frank Niessen, Dhiresh Hansaraj

United States Geological Survey: Staff Publications

The Antarctic Drilling Program (ANDRILL) successfully drilled and cored a borehole, AND-1B, beneath the McMurdo Ice Shelf and into a flexural moat basin that surrounds Ross Island. Total drilling depth reached 1285 m below sea floor (mbsf) with 98 percent core recovery for the detailed study of glacier dynamics. With the goal of obtaining complementary information regarding heat fl ow and permeability, which is vital to understanding the nature of marine hydrogeologic systems, a succession of three temperature logs was recorded over a five day span to monitor the gradual thermal recovery toward equilibrium conditions. These data were extrapolated to …

The Cleaning Of Burned And Contaminated Archaeological Maize Prior To 87sr/86sr Analysis, L.V. Benson, H. E. Taylor, T. I. Plowman, D. A. Roth, R. C. Antweiler

United States Geological Survey: Staff Publications

Accurate trace-metal and strontium-isotope analyses of archaeological corn cobs require that metal contaminants be removed prior to chemical analysis. Archaeological cobs are often coated with construction debris, dust, or soilwhich contains mineral particles. In addition, most archaeological cobs are partially or completely burned and the burned parts incorporate mineral debris in their hardened residual structures. Unburned cobs are weak ion exchangers and most metals within a cob are not firmly bound to cob organic matter; therefore, immersing cobs in acids and rinsing them in deionized water to remove mineral contaminants may result in the undesirable loss of metals, including strontium, …

Barcoding Bushmeat: Molecular Identification Of Central African And South American Harvested Vertebrates, Mitchell J. Eaton, Greta J. Meyers, Sergios-Orestis Kolokotronis, Matthew S. Leslie, Andrew P. Martin, George Amato

United States Geological Survey: Staff Publications

The creation and use of a globally available database of DNA sequences from a standardized gene region has been proposed as a tool for species identification, assessing genetic diversity and monitoring the legal and illegal trade in wildlife species. Here, we contribute to the Barcode of Life Data System and test whether a short region of the mitochondrial cytochrome c oxidase subunit 1 (COX1) gene would reliably distinguish among a suite of commonly hunted African and South American mammal and reptile species. We used universal primers to generate reference barcode sequences of 645 bp for 23 species from five vertebrate …

Barcoding Bushmeat: Molecular Identification Of Central African And South American Harvested Vertebrates, Mitchell J. Eaton, Greta L. Meyers, Sergios-Orestis Kolokotronis, Matthew S. Leslie, Andrew P. Martin, George Amato

United States Geological Survey: Staff Publications

The creation and use of a globally available database of DNA sequences from a standardized gene region has been proposed as a tool for species identification, assessing genetic diversity and monitoring the legal and illegal trade in wildlife species. Here, we contribute to the Barcode of Life Data System and test whether a short region of the mitochondrial cytochrome c oxidase subunit 1 (COX1) gene would reliably distinguish among a suite of commonly hunted African and South American mammal and reptile species. We used universal primers to generate reference barcode sequences of 645 bp for 23 species from five vertebrate …

Development And Application Of A Pollen-Based Paleohydrologic Reconstruction From The Lower Roanoke River Basin, North Carolina, Usa, Debra Willard, Christopher Bernhardt, Roger Brown, Bryan Landacre, Philip A. Townsend

United States Geological Survey: Staff Publications

We used pollen assemblages to reconstruct late-Holocene paleohydrologic patterns in floodplain deposits from the lower Roanoke River basin (North Carolina, southeastern USA). Using 120 surface samples from 38 transects, we documented statistical relationships between pollen assemblages, vegetation, and landforms. Backswamp pollen assemblages (long hydroperiods) are dominated by Nyssa (tupelo) and Taxodium (cypress) and have high pollen concentrations. Sediments from elevated levees and seasonally flooded forests (shorter hydroperiods) are characterized by dominant Pinus (pine) pollen, variable abundance of hardwood taxa, and low pollen concentrations. We apply the calibration data set to interpret past vegetation and paleohydrology. Pollen from a radiocarbon-dated sediment …

Abandoned Mine Drainage In The Swatara Creek Basin, Southern Anthracite Coalfield, Pennsylvania, Usa: 2. Performance Of Treatment Systems, Charles A. Cravotta Iii

United States Geological Survey: Staff Publications

A variety of passive and semi-passive treatment systems were constructed by state and local agencies to neutralize acidic mine drainage (AMD) and reduce the transport of dissolved metals in the upper Swatara Creek Basin in the Southern Anthracite Coalfield in eastern Pennsylvania. To evaluate the effectiveness of selected treatment systems installed during 1995–2001, the US Geological Survey collected water-quality data at upstream and downstream locations relative to each system eight or more times annually for a minimum of 3 years at each site during 1996– 2007. Performance was normalized among treatment types by dividing the acid load removed by the …

Abandoned Mine Drainage In The Swatara Creek Basin, Southern Anthracite Coalfield, Pennsylvania, Usa: 1. Stream Water Quality Trends Coinciding With The Return Of Fish, Charles A. Cravotta Iii, Robin A. Brightbill, Michael J. Langland

United States Geological Survey: Staff Publications

Acidic mine drainage (AMD) from legacy anthracite mines has contaminated Swatara Creek in eastern Pennsylvania. Intermittently collected base-flow data for 1959–1986 indicate that fish were absent immediately downstream from the mined area where pH ranged from 3.5 to 7.2 and concentrations of sulfate, dissolved iron, and dissolved aluminum were as high as 250, 2.0, and 4.7 mg/L, respectively. However, in the 1990s, fish returned to upper Swatara Creek, coinciding with the implementation of AMD treatment (limestone drains, limestone diversion wells, limestone sand, constructed wetlands) in the watershed. During 1996–2006, as many as 25 species of fish were identified in the …

Recent Advances In Global Lake Coring Hold Promise For Global Change Research In Paleolimnology, Walter E. Dean

United States Geological Survey: Staff Publications

Thank you, Antje, for your generous comments and I thank IPA for presenting me with this award along with three giants of paleolimnology! I am humbled and delighted to accept this award as a representative of all those in the Paleolimnology community whose creative insights continue to make Paleolimnology inspiring.

The Influence Of Topology On Hydraulic Conductivity In A Sand-And-Gravel Aquifer, Roger H. Morin, Denis R. Leblanc, Brent M. Troutman

United States Geological Survey: Staff Publications

A field experiment consisting of geophysical logging and tracer testing was conducted in a single well that penetrated a sand-and-gravel aquifer at the U.S. Geological Survey Toxic Substances Hydrology research site on Cape Cod, Massachusetts. Geophysical logs and flowmeter/pumping measurements were obtained to estimate vertical profiles of porosity ϕ, hydraulic conductivity K, temperature, and bulk electrical conductivity under background, freshwater conditions. Saline-tracer fluid was then injected into the well for 2 h and its radial migration into the surrounding deposits was monitored by recording an electromagnetic-induction log every 10 min. The field data are analyzed and interpreted primarily …

Scale‐Invariant Stress Orientations And Seismicity Rates Near The San Andreas Fault, Amy Day-Lewis, Mark D. Zoback, Stephen Hickman

United States Geological Survey: Staff Publications

We analyzed measurements of the direction of maximum horizontal compressive stress as a function of depth in two scientific research wells near the San Andreas Fault in central and southern California. We found that the stress orientations exhibit scale‐invariant fluctuations over intervals from tens of cm to several km. Similarity between the scaling of the stress orientation fluctuations and the scaling of earthquake frequency with fault size suggests that these fluctuations are controlled by stress perturbations caused by slip on faults of various sizes in the critically‐stressed crust adjacent to the fault. The apparent difference in stress scaling parameters between …

The Ties That Bind: Soil Surveyor William Edgar Tharp And Oceanographic Cartographer Marie Tharp, Edward R. Landa

United States Geological Survey: Staff Publications

The link between soil science and geology is personified in the American father and daughter: soil surveyor William Edgar Tharp (1870–1959) and oceanographic cartographer Marie Tharp (1920–2006). From 1904 to 1935, W.E. Tharp mapped soils in 14 states for the US Department of Agriculture, and campaigned during the late 1920s–early 1930s to raise awareness of the high rates of soil erosion from croplands. The lifestyle of the federal soil surveyor in the United States during the early 20th century involved frequent household moves, and it played a formative role in Marie Tharp’s childhood. Her path to a career in geology …

Mercury Concentrations In Fish From A Sierra Nevada Foothill Reservoir Located Downstream From Historic Gold-Mining Operations, Michael K. Saiki, Barbara A. Martin, Thomas W. May, Charles N. Alpers

United States Geological Survey: Staff Publications

This study examined mercury concentrations in whole fish from Camp Far West Reservoir, an 830-ha reservoir in northern California, USA, located downstream from lands mined for gold during and following the Gold Rush of 1848–1864. Total mercury (reported as dry weight concentrations) was highest in spotted bass (mean, 0.93 μg/g; range, 0.16–4.41 μg/g) and lower in bluegill (mean, 0.45 μg/g; range, 0.22– 1.96 μg/g) and threadfin shad (0.44 μg/g; range, 0.21–1.34 μg/g). Spatial patterns for mercury in fish indicated high concentrations upstream in the Bear River arm and generally lower concentrations elsewhere, including downstream near the dam. These findings coincided …

Microbial Production Of Isotopically Light Iron(Ii) In A Modern Chemically Precipitated Sediment And Implications For Isotopic Variations In Ancient Rocks, G. E. Tangalos, B. L. Beard, C. M. Johnson, Charles N. Alpers, E. S. Shelobolina, H. Xu, H. Konishi, E. E. Roden

United States Geological Survey: Staff Publications

The inventories and Fe isotope composition of aqueous Fe(II) and solid-phase Fe compounds were quantified in neutral-pH, chemically precipitated sediments downstream of the Iron Mountain acid mine drainage site in northern California, USA. The sediments contain high concentrations of amorphous Fe(III) oxyhydroxides [Fe(III)_am] that allow dissimilatory iron reduction (DIR) to predominate over Fe–S interactions in Fe redox transformation, as indicated by the very low abundance of Cr(II)-extractable reduced inorganic sulfur compared with dilute HCl-extractable Fe. δ⁵⁶Fe values for bulk HCl- and HF-extractable Fe were ≈ 0. These near-zero bulk δ⁵⁶Fe values, together with the …

The Role Of African Dust In The Formation Of Quaternary Soils On Mallorca, Spain And Implications For The Genesis Of Red Mediterranean Soils, Daniel R. Muhs, James Budahn, Anna Avila, Gary Skipp, Joshua Freeman, Deanna Patterson

United States Geological Survey: Staff Publications

African dust additions explain the origin of terra rossa soils that are common on the carbonate-platform island of Mallorca, Spain. Mineralogical and geochemical analyses indicate that Quaternary carbonate eolianites on Mallorca have a very high purity, usually composed of more than 90% carbonate minerals (calcite, dolomite, and aragonite). In contrast, terra rossa soils developed on these eolianites have lower carbonate contents and contain higher concentrations of quartz and other silicates. Analyses of immobile trace elements indicate that the non-carbonate fractions of the eolianites have distinctive Zr/Hf, La/Yb, Cr/Sc and Th/Ta values that differ from the superjacent terra rossa soils. These …

Assessing The Potential For Luminescence Dating Of Basalts, S. Tsukamoto, G. A.T. Duller, A. G. Wintle, Daniel R. Muhs

United States Geological Survey: Staff Publications

The possibility of dating basalt using luminescence was tested on four samples with independent age control from Cima volcanic !eld, California, with the ultimate aim of assessing whether the technique could be used to date sediments on the surface of Mars. Previous analysis of these samples had demonstrated that the infrared stimulated luminescence (IRSL) signal is most suitable for dating as it showed the lowest fading rate among various luminescence signals. In this study, changes in equivalent dose as a function of preheat are described. The ages for the two youngest Cima samples agree with the independent ages based on …

Holocene Landscape Response To Seasonality Of Storms In The Mojave Desert, David M. Miller, Kevin M. Schmidt, Shannon A. Mahan, John P. Mcgeehin, Lewis A. Owen, John A. Barron, Frank Lehmkuhl, Rene Lohrer

United States Geological Survey: Staff Publications

New optically stimulated and radiocarbon ages for alluvial fan and lake deposits in the Mojave Desert are presented, which greatly improves the temporal resolution of surface processes. The new Mojave Desert climate-landscape record is particularly detailed for the late Holocene. Evidence from ephemeral lake deposits and landforms indicates times of sustained stream flow during a wet interval of the latter part of the Medieval Warm Period at ca. AD 1290 and during the Little Ice Age at ca. AD 1650. The former lakes postdate megadroughts of the Medieval Warm Period, whereas the latter match the Maunder Minimum of the Little …

In-Situ Stress And Fracture Characterization For Planning Of An Egs Stimulation In The Desert Peak Geothermal Field, Nevada, Stephen H. Hickman, Nicholas C. Davatzes

United States Geological Survey: Staff Publications

An integrated study of natural fracture geometry, fluid flow and stress was conducted in Desert Peak well 27-15 in preparation for development of an Enhanced Geothermal System (EGS) through hydraulic stimulation. This stimulation will be carried out at depths of ~3000 to 3500 ft in units comprised of silicified rhyolite tuffs and metamorphosed mudstones at ambient temperatures of ~180 to 195° C. Our previous analyses of borehole image logs from this well showed that the current minimum horizontal principal stress, Shmin, is oriented 114 ± 17º and that numerous fractures in the planned stimulation interval are optimally oriented for normal …

Hydrogeophysical Methods For Analyzing Aquifer Storage And Recovery Systems, Burke J. Minsley, Jonathan Ajo-Franklin, Amitabha Mukhopadhyay, Frank Dale Morgan

United States Geological Survey: Staff Publications

Hydrogeophysical methods are presented that support the siting and monitoring of aquifer storage and recovery (ASR) systems. These methods are presented as numerical simulations in the context of a proposed ASR experiment in Kuwait, although the techniques are applicable to numerous ASR projects. Bulk geophysical properties are calculated directly from ASR flow and solute transport simulations using standard petrophysical relationships and are used to simulate the dynamic geophysical response to ASR. This strategy provides a quantitative framework for determining site-specific geophysical methods and data acquisition geometries that can provide the most useful information about the ASR implementation. An axisymmetric, coupled …

Evidence For Recent Population Bottlenecks In Northern Spotted Owls (Strix Occidentalis Caurina), W. Chris Funk, Eric D. Forsman, Matthew Johnson, Thomas D. Mullins, Susan M. Haig

United States Geological Survey: Staff Publications

The northern spotted owl (Strix occidentalis caurina) is one of the most controversial threatened subspecies ever listed under the US Endangered Species Act. Despite protection of its remaining forest habitat, recent field studies show continued declines of northern spotted owls. One potential threat to northern spotted owls which has not yet been shown is loss of genetic variation from population bottlenecks. Bottlenecks can increase the probability of mating among related individuals, potentially causing inbreeding depression, and can decrease adaptive potential. Here we report evidence for recent bottlenecks in northern spotted owls using a large genetic dataset (352 individuals …

Subspecies Status And Population Genetic Structure In Piping Plover (Charadrius Melodus), Mark P. Miller, Susan M. Haig, Cheri L. Gratto-Trevor, Thomas D. Mullins

United States Geological Survey: Staff Publications

Piping Plover (Charadrius melodus) is a migratory shorebird that is listed as endangered in Canada and the U.S. Great Lakes and as threatened throughout the rest of its breeding and winter range. We undertook a comprehensive molecular-genetic investigation to (1) address subspecific taxonomy, (2) characterize population genetic structure, and (3) infer past bottlenecks and demographic processes in this species. Analyses included individuals from 23 U.S. states and Canadian provinces and were based on mitochondrial DNA sequences (580 base pairs, n = 245) and 8 nuclear microsatellite loci (n = 229). Our findings provide support for separate Atlantic and …

Absorption And Biotransformation Of Polybrominated Diphenyl Ethers De-71 And De-79 In Chicken (Gallus Gallus), Mallard (Anas Platyrhynchos), American Kestrel (Falco Sparverius) And Black-Crowned Night-Heron (Nycticorax Nycticorax) Eggs, Moira A. Mckernan, Barnett A. Rattner, Jeff S. Hatfield, Robert C. Hale, Mary Ann Ottinger

United States Geological Survey: Staff Publications

We recently reported that air cell administration of penta-brominated diphenyl ether (penta-BDE; DE-71) evokes biochemical and immunologic effects in chicken (Gallus gallus) embryos at very low doses, and impairs pipping (i.e., stage immediately prior to hatching) and hatching success at 1.8 µg g^-1 egg (actual dose absorbed) in American kestrels (Falco sparverius). In the present study, absorption of polybrominated diphenyl ether (PBDE) congeners was measured following air cell administration of a penta-BDE mixture (11.1 lg DE-71 g^-1 egg) or an octa-brominated diphenyl ether mixture (octa BDE; DE-79; 15.4 lg DE-79 g^{- …}

Mineralogical And Chemical Characteristics Of Some Natural Jarosites, George A. Desborough, Kathleen S. Smith, Heather A. Lowers, Gregg A. Swayze, Jane M. Hammarstrom, Sharon F. Diehl, Reinhard W. Leinz, Rhonda L. Driscoll

United States Geological Survey: Staff Publications

This paper presents a detailed study of the mineralogical, microscopic, thermal, and spectral characteristics of jarosite and natrojarosite minerals. Systematic mineralogic and chemical examination of a suite of 32 natural stoichiometric jarosite and natrojarosite samples from diverse supergene and hydrothermal environments indicates that there is only limited solid solution between Na and K at low temperatures, which suggests the presence of a solvus in the jarosite-natrojarosite system at temperatures below about 140 °C. The samples examined in this study consist of either end members or coexisting end-member pairs of jarosite and natrojarosite. Quantitative electron-probe microanalysis data for several natural hydrothermal …