Physical Sciences and Mathematics Commons^™

Framework For Kernel Based Bm3d Algorithm, Mena Abdelrahman Massoud

Electronic Thesis and Dissertation Repository

Patch-based approaches such as Block Matching and 3D collaborative Filtering (BM3D) algorithm represent the current state-of-the-art in image denoising. However, BM3D still suffers from degradation in performance in smooth areas as well as loss of image details, specifically in the presence of high noise levels.

Integrating shape adaptive methods with BM3D improves the denoising outcome including the visual quality of the denoised image; and also maintains image details. In this study, we proposed a framework that produces multiple images using various shapes. These images were aggregated at the pixel or patch levels for both stages in BM3D, and when appropriately …

Computational Methods For Predicting Protein-Protein Interactions And Binding Sites, Yiwei Li

Electronic Thesis and Dissertation Repository

Proteins are essential to organisms and participate in virtually every process within cells. Quite often, they keep the cells functioning by interacting with other proteins. This process is called protein-protein interaction (PPI). The bonding amino acid residues during the process of protein-protein interactions are called PPI binding sites. Identifying PPIs and PPI binding sites are fundamental problems in system biology.

Experimental methods for solving these two problems are slow and expensive. Therefore, great efforts are being made towards increasing the performance of computational methods.

We present DELPHI, a deep learning based program for PPI site prediction and SPRINT, an algorithmic …

Discrimination Of Leucine And Isoleucine In De Novo Peptide Sequencing Using Deep Neural Networks, Bingran Shen

Electronic Thesis and Dissertation Repository

De novo peptide sequencing from tandem MS data is a key technology in proteomics for understanding the structure of proteins, especially for first seen sequences. Although this technique has advanced rapidly in recent years and become more effective, one crucial problem remained unsolved. Due to the isomerism of leucine and isoleucine, they are practically indistinguishable in de novo sequencing using traditional tandem MS data. Some experimental attempts have been made to resolve this ambiguity such as EThCD fragmentation process. In this study, we took a data focused approach rather than only looking for characteristic satellite ions produced by the EThCD …

Automated Anomaly Detection And Localization System For A Microservices Based Cloud System, Priyanka Prakash Naikade

Electronic Thesis and Dissertation Repository

Context: With an increasing number of applications running on a microservices-based cloud system (such as AWS, GCP, IBM Cloud), it is challenging for the cloud providers to offer uninterrupted services with guaranteed Quality of Service (QoS) factors. Problem Statement: Existing monitoring frameworks often do not detect critical defects among a large volume of issues generated, thus affecting recovery response times and usage of maintenance human resource. Also, manually tracing the root causes of the issues requires a significant amount of time. Objective: The objective of this work is to: (i) detect performance anomalies, in real-time, through monitoring KPIs (Key Performance …

A Hybrid Approach To Procedural Dungeon Generation, Mathias Paul Babin

Electronic Thesis and Dissertation Repository

This thesis presents a novel approach to the Procedural Content Generation (PCG) of both maze and dungeon environments. The solution we propose in this thesis borrows techniques from both Procedural Content Generation via Machine Learning as well as Constructive PCG methods. The approach we take involves decomposing the problem of level generation into a series of stages which begins with the production of macro-level functional structures and ends with micro-level aesthetic details; specifically, we train a Deep Convolutional Neural Network to produce high-quality mazes, which in turn, are transformed into the rooms of larger dungeon levels using a constructive algorithm. …

Edge-Cloud Iot Data Analytics: Intelligence At The Edge With Deep Learning, Ananda Mohon M. Ghosh

Electronic Thesis and Dissertation Repository

Rapid growth in numbers of connected devices, including sensors, mobile, wearable, and other Internet of Things (IoT) devices, is creating an explosion of data that are moving across the network. To carry out machine learning (ML), IoT data are typically transferred to the cloud or another centralized system for storage and processing; however, this causes latencies and increases network traffic. Edge computing has the potential to remedy those issues by moving computation closer to the network edge and data sources. On the other hand, edge computing is limited in terms of computational power and thus is not well suited for …

Identifying External Cross-References Using Natural Language Processing (Nlp), Elham Rahmani

Electronic Thesis and Dissertation Repository

[Context and motivation] Software engineers build systems that need to be compliant with relevant regulations. These regulations are stated in authoritative documents from which regulatory requirements need to be elicited. Project contract contains cross-references to these regulatory requirements in external documents. [Problem] Exploring and identifying the regulatory requirements in voluminous textual data is enormously time consuming, and hence costly, and error-prone in sizable software projects. [Principal idea and novelty] We use Natural Language Processing (NLP), Pattern Recognition and Web Scrapping techniques for automatically extracting external cross-references from contractual requirements and prepare a map for representing related external cross-references …

Hierarchical Group And Attribute-Based Access Control: Incorporating Hierarchical Groups And Delegation Into Attribute-Based Access Control, Daniel Servos

Electronic Thesis and Dissertation Repository

Attribute-Based Access Control (ABAC) is a promising alternative to traditional models of access control (i.e. Discretionary Access Control (DAC), Mandatory Access Control (MAC) and Role-Based Access control (RBAC)) that has drawn attention in both recent academic literature and industry application. However, formalization of a foundational model of ABAC and large-scale adoption is still in its infancy. The relatively recent popularity of ABAC still leaves a number of problems unexplored. Issues like delegation, administration, auditability, scalability, hierarchical representations, etc. have been largely ignored or left to future work. This thesis seeks to aid in the adoption of ABAC by filling in …