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Full-Text Articles in Physical Sciences and Mathematics

Large-Eddy Simulation Of The Transient And Near-Equilibrium Behavior Of Precipitating Shallow Convection, Axel Seifert, Thijs Heus, Robert Pincus, Bjorn Stevens Dec 2015

Large-Eddy Simulation Of The Transient And Near-Equilibrium Behavior Of Precipitating Shallow Convection, Axel Seifert, Thijs Heus, Robert Pincus, Bjorn Stevens

Physics Faculty Publications

Large-eddy simulation is used to study the sensitivity of trade wind cumulus clouds to perturbations in cloud droplet number concentrations. We find that the trade wind cumulus system approaches a radiative-convective equilibrium state, modified by net warming and drying from imposed large-scale advective forcing. The system requires several days to reach equilibrium when cooling rates are specified but much less time, and with less sensitivity to cloud droplet number density, when radiation depends realistically on the vertical distribution of water vapor. The transient behavior and the properties of the near-equilibrium cloud field depend on the microphysical state and therefore on …


Overlap Statistics Of Shallow Boundary Layer Clouds: Comparing Ground-Based Observations With Large-Eddy Simulations, G. Corbetta, E. Orlandi, Thijs Heus, Roel Neggers, S. Crewell Oct 2015

Overlap Statistics Of Shallow Boundary Layer Clouds: Comparing Ground-Based Observations With Large-Eddy Simulations, G. Corbetta, E. Orlandi, Thijs Heus, Roel Neggers, S. Crewell

Physics Faculty Publications

High-resolution ground-based measurements are used to assess the realism of fine-scale numerical simulations of shallow cumulus cloud fields. The overlap statistics of cumuli as produced by large-eddy simulations (LES) are confronted with Cloudnet data sets at the Jülich Observatory for Cloud Evolution. The Cloudnet pixel is small enough to detect cumuliform cloud overlap. Cloud fraction masks are derived for five different cases, using gridded time-height data sets at various temporal and vertical resolutions. The overlap ratio (R), i.e., the ratio between cloud fraction by volume and by area, is studied as a function of the vertical resolution. Good agreement is …


Mechanical Properties Of A Primary Cilium As Measured By Resonant Oscillation, Andrew Resnick Jul 2015

Mechanical Properties Of A Primary Cilium As Measured By Resonant Oscillation, Andrew Resnick

Physics Faculty Publications

Primary cilia are ubiquitous mammalian cellular substructures implicated in an ever-increasing number of regulatory pathways. The well-established ciliary hypothesis states that physical bending of the cilium (for example, due to fluid flow) initiates signaling cascades, yet the mechanical properties of the cilium remain incompletely measured, resulting in confusion regarding the biological significance of flow-induced ciliary mechanotransduction. In this work we measure the mechanical properties of a primary cilium by using an optical trap to induce resonant oscillation of the structure. Our data indicate 1) the primary cilium is not a simple cantilevered beam; 2) the base of the cilium may …


A Model For The Force Exerted On A Primary Cilium By An Optical Trap And The Resulting Deformation, Ian Lofgren, Andrew Resnick May 2015

A Model For The Force Exerted On A Primary Cilium By An Optical Trap And The Resulting Deformation, Ian Lofgren, Andrew Resnick

Physics Faculty Publications

Cilia are slender flexible structures extending from the cell body; genetically similar to flagella. Although their existence has been long known, the mechanical and functional properties of non-motile (“primary”) cilia are largely unknown. Optical traps are a non-contact method of applying a localized force to microscopic objects and an ideal tool for the study of ciliary mechanics. We present a method to measure the mechanical properties of a cilium using an analytic model of a flexible, anchored cylinder held within an optical trap. The force density is found using the discrete-dipole approximation. Utilizing Euler-Bernoulli beam theory, we then integrate this …


Reconciling And Validating The Cloud Thickness And Liquid Water Path Tendencies, Mohamed S. Ghonima, Joel R. Norris, Thijs Heus, Jan Kleissl May 2015

Reconciling And Validating The Cloud Thickness And Liquid Water Path Tendencies, Mohamed S. Ghonima, Joel R. Norris, Thijs Heus, Jan Kleissl

Physics Faculty Publications

A detailed derivation of stratocumulus cloud thickness and liquid water path tendencies as a function of the well-mixed boundary layer mass, heat, and moisture budget equations is presented. The derivation corrects an error in the cloud thickness tendency equation derived by R. Wood to make it consistent with the liquid water path tendency equation derived by J. J. van der Dussen et al. The validity of the tendency equations is then tested against the output of large-eddy simulations of a typical stratocumulus-topped boundary layer case and is found to be in good agreement.


Giant Magnetization Canting Due To Symmetry Breaking In Zigzag Co Chains On Ir(001), B. Dupé, Jessica E. Bickel, Y. Mokrousov, F. Otte, Kirsten Von Bergmann, André Kubetzka, Stefan Heinze, Roland Wiesendanger Feb 2015

Giant Magnetization Canting Due To Symmetry Breaking In Zigzag Co Chains On Ir(001), B. Dupé, Jessica E. Bickel, Y. Mokrousov, F. Otte, Kirsten Von Bergmann, André Kubetzka, Stefan Heinze, Roland Wiesendanger

Physics Faculty Publications

We demonstrate a canted magnetization of biatomic zigzag Co chains grown on the (5 × 1) reconstructed Ir(001) surface using density functional theory (DFT) calculations and spin-polarized scanning tunneling microscopy (SP-STM) experiments. It is observed by STM that biatomic Co chains grow in three different structural configurations. Our DFT calculations show that they are all in a ferromagnetic (FM) state. Two chain types possess high symmetry due to two equivalent atomic strands and an easy magnetization direction that is along one of the principal crystallographic axes. The easy magnetization axis of the zigzag Co chains is canted away from the …


Fluctuations In A Quasi-Stationary Shallow Cumulus Cloud Ensemble, M. Sakradzija, Axel Seifert, Thijs Heus Jan 2015

Fluctuations In A Quasi-Stationary Shallow Cumulus Cloud Ensemble, M. Sakradzija, Axel Seifert, Thijs Heus

Physics Faculty Publications

We propose an approach to stochastic parameterisation of shallow cumulus clouds to represent the convective variability and its dependence on the model resolution. To collect information about the individual cloud lifecycles and the cloud ensemble as a whole, we employ a large eddy simulation (LES) model and a cloud tracking algorithm, followed by conditional sampling of clouds at the cloud-base level. In the case of a shallow cumulus ensemble, the cloud-base mass flux distribution is bimodal, due to the different shallow cloud subtypes, active and passive clouds. Each distribution mode can be approximated using a Weibull distribution, which is a …