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Full-Text Articles in Physical Sciences and Mathematics

Software Development For Genome Sequence Analysis, David Farr May 2017

Software Development For Genome Sequence Analysis, David Farr

Symposium Of University Research and Creative Expression (SOURCE)

The cost of genome sequencing has decreased rapidly, expanding availability for many biological applications (Muir 2016). For example, researchers can now obtain genome sequences from multiple populations under different types of selection. Comparison of these sequences allows for identification of chromosome regions and specific genes associated with adaptive evolution (Kelly 2013). As an increasing number of researchers engage in this type of inquiry, many have created in-house computer scripts to analyze the raw sequence data (e.g., Kelly 2013), creating a gap in both continuity and standardization.

Using a test dataset and preliminary results from an ongoing artificial selection experiment in …


Eastern Washington Wildfires: Tracking Land Recovery In The Colockum Tarps Wildfire Area, Michael Balda, Allison Shinn May 2015

Eastern Washington Wildfires: Tracking Land Recovery In The Colockum Tarps Wildfire Area, Michael Balda, Allison Shinn

Symposium Of University Research and Creative Expression (SOURCE)

Eastern Washington State has seen an increase in wildfire activity because of policies of fire suppression and changing climate. The Colockum Tarps wildfire started on July 27, 2013, in Malaga, Washington, due to a water pump malfunction. After ignition, the fire quickly moved south-southwest and burned a total area of 80,408 acres of grasslands and forest. We combined fieldwork and geospatial analysis of aerial photography and satellite imagery to examine vegetative recovery within the fire area. Using ArcGIS and PCI Geomatica, we analyzed 2013 National Agricultural Imaging Program (NAIP) images and a wildfire perimeter shapefile from the Bureau of Land …