Physical Sciences and Mathematics Commons^™

Soil Reclamation Strategies In Construction Disturbed Soil, Alexis Koelling

All Graduate Reports and Creative Projects, Fall 2023 to Present

The rapid urbanization occurring in arid environments like the Intermountain West region of the U.S. significantly alters soil conditions. Construction of roads, buildings, and other infrastructure leads to the disturbance of soil structure, nutrient depletion, and reduced fertility. This research addresses the need for sustainable soil management practices that may restore soil health post-construction. In this study, the effectiveness of various soil amendments and application methods on specific soil parameters and turfgrass establishment in construction-disturbed soils was evaluated. The study highlights the critical role of soil amendments, particularly municipal solid waste (MSW) compost, in improving soil quality and plant growth. …

Sustainable Fertilizer Management Practices For Container Nursery Production, Saroj Burlakoti

All Graduate Theses and Dissertations, Fall 2023 to Present

Growing nursery plants in containers requires a timely supply of mineral nutrients for optimum growth. However, there is a misconception among growers that the application of higher doses of fertilizers hastens plant growth; instead, it can lead to runoff and leaching loss of nutrients. Reducing fertilizer application while sustaining healthy plants can not only negate environmental consequences but also save fertilizer costs. For example, two ground covers, Lysimachia nummularia (creeping jenny, moneywort) and Vinca minor 'Bowles' (periwinkle), can be grown for three months by applying 6 mg/L of phosphorus (P) as reduction of P to single application of 6 mg/L …

Reducing Inputs And Adding Value To Turfgrass Systems Through Clover Inclusion And Plant Growth-Promoting Rhizobacteria Applications, Paige E. Boyle

All Graduate Theses and Dissertations, Fall 2023 to Present

Recently, the US has seen an expansion in the amount of turfgrass land cover (lawns, parks, roadsides, sports fields, and golf courses), as well as an interest in reducing fertilizer, water, and pesticide use in these grass systems. To help maintain quality and function while reducing resource inputs, two promising approaches have emerged: planting clover into lawns and applying plant growth-promoting rhizobacteria.

White clover and grass mixtures have been studied for their ability to cut down on fertilizer usage and provide a uniform, dark green lawn, but other clover types have not been as widely studied and may provide similar …

Ecology And Management Of Dyer's Woad (Isatis Tinctoria) In Northern Utah, Erin Marie Hettinger

All Graduate Theses and Dissertations, Fall 2023 to Present

Dyer’s woad (Isatis tinctoria L.) is a non-native forb that continues to threaten natural areas throughout Northern Utah and much of the Intermountain West. Once introduced, dyer’s woad can become extremely invasive, decreasing forage quality, and displacing native species. While dyer’s woad is found throughout much of Northern Utah, its range in other states remains limited. If promptly managed, control success in these areas will be much higher and populations may be kept at bay before ecological damage becomes severe.

This project tested the ability of dyer’s woad seedlings to compete with common rangeland grasslands at varied densities as …

Are Plant–Soil Feedbacks Caused By Many Weak Microbial Interactions?, Julia K. Aaronson, Andrew Kulmatiski, Leslie E. Forero, Josephine Grenzer, Jeanette M. Norton

Wildland Resources Student Research

We used high-throughput sequencing and multivariate analyses to describe soil microbial community composition in two four-year field plant–soil feedback (PSF) experiments in Minnesota, USA and Jena, Germany. In descending order of variation explained, microbial community composition differed between the two study sites, among years, between bulk and rhizosphere soils, and among rhizosphere soils cultivated by different plant species. To try to identify soil organisms or communities that may cause PSF, we correlated plant growth responses with the microbial community composition associated with different plants. We found that plant biomass was correlated with values on two multivariate axes. These multivariate axes …

Evapotranspiration And Energy Balance Of Irrigated Urban Turfgrass, Matthew D. Miksch

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Water usage for irrigation is a big consumer of water resources in urban areas in Utah and other parts of the Intermountain Region of the Western United States. As populations continue to increase in these states, it is important to understand how much water is being used by urban landscapes in order to plan and manage future water resources. Evapotranspiration (ET), or the amount of water leaving a surface over a certain timeframe due to both transpiration from plants and evaporation from the soil, is a key variable in understanding how much water urban landscapes are really using to grow …

Practical Improvements For Pivot And Surface Irrigation, Jonathan A. Holt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Irrigation is critical to meeting global food and fiber demands. Optimizing agricultural irrigation may help sustain production levels, while reducing its demand for water. This research evaluated precision sprinklers and drip irrigation for pivots, five pivot track mitigation tools, three scientific irrigation scheduling (SIS) methods, sensors for surface irrigation cutoff, and automating surface systems to implement surge irrigation. With pivots and surface irrigation being the most common methods for irrigation in the West, small improvements from these tools could result in significant water savings.

Low energy precision application (LEPA) sprinklers and mobile drip irrigation (MDI) were tested on two pivots. …

Far-Red Photography For Measuring Plant Growth: A Novel Approach, Cole Webb, F. Mitchell Westmoreland, Bruce Bugbee, Xiaojun Qi

Techniques and Instruments

A critical part of agricultural studies is determining plant stress and growth rate. Modern computer vision provides a series of tools that can be applied to derive this data. In this paper, we will show our findings, analyze their accuracy, and define a system capable of deriving this data with near-human accuracy in a fraction of the time. Denoising techniques applicable to this system will be discussed, as will our discoveries and findings. Finally, suggestions for further research opportunities will be provided.

Rapid Quantitative Analysis Of Toxic Norditerpenoid Alkaloids In Larkspur (Delphinium Spp.) By Flow Injection - Electrospray Ionization – Mass Spectrometry, Dale R. Gardner, Stephen T. Lee, Daniel Cook

Poisonous Plant Research (PPR)

A rapid flow injection - electrospray ionization – mass spectrometry (FI-ESI-MS) method for the quantitative and qualitative analysis of norditerpenoid alkaloids in larkspur plants was developed. The FI-ESI-MS method was calibrated for alkaloid concentrations with larkspur plant samples against an existing Fourier transform infrared spectroscopy FTIR method. There was a strong correlation (r = 0.9926, r = 0.9891) between the FTIR and FI-ESI-MS methods. The relative standard deviation (RSD) for all measurements were ≤ 6.2 % except for the sample with the lowest concentration which was 19%. The sample throughput of the FI-ESI-MS method is much higher than the FTIR …

Moderate Plant–Soil Feedbacks Have Small Effects On The Biodiversity–Productivity Relationship: A Field Experiment, Josephine Grenzer, Andrew Kulmatiski, Leslie Forero, Anne Ebeling, Nico Eisenhauer, Jeanette Norton

Wildland Resources Student Research

Plant–soil feedback (PSF) has gained attention as a mechanism promoting plant growth and coexistence. However, most PSF research has measured monoculture growth in greenhouse conditions. Translating PSFs into effects on plant growth in field communities remains an important frontier for PSF research. Using a 4-year, factorial field experiment in Jena, Germany, we measured the growth of nine grassland species on soils conditioned by each of the target species (i.e., 72 PSFs). Plant community models were parameterized with or without these PSF effects, and model predictions were compared to plant biomass production in diversity–productivity experiments. Plants created soils that changed subsequent …

In Silico Screeing Of Natural Compounds As Novel Drug Targets For Treatment Of Multiple Myeloma, Rousselene Larson

Student Research Symposium

In Silico Screening of Natural Compounds as Novel Drug Targets for The Treatment of Multiple MyelomaRousselene Larson1 2, Naveen Duhan1, and Rakesh Kaundal1 2 *1Department of Plants, Soils, and Climate, College of Agriculture and Applied Sciences; 2Bioinformatics Facility, Center for Integrated BioSystems; Utah State University, Logan, UT 84322 USA* corresponding author (e-mail: rkaundal@usu.edu)Telephone: +1 (435) 797-4117Fax: +1 (435) 797-2766Abstract: Multiple Myeloma (MM) is an incurable hematological malignancy cancer characterized by excessive clonal plasma cell proliferation in the bone marrow. In the United States, MM is the second most prevalent type of cancer that affects about 4 in 100,000 Americans. Toxicity …

Day Versus Night Irrigation Loss From Sprinkler Irrigation Of Urban Crops, Samikshya Pyakurel

Student Research Symposium

Nighttime irrigation is a widespread strategy to conserve water, as it reduces wind drift and evaporation loss (WDEL). However, daytime sprinkler irrigation may also conserve water by lowering the temperature and increasing the humidity of crop microclimates, thereby reducing evapotranspiration (ET). Therefore, the objectives of this study include: 1) quantify whether a water savings exists between day and night irrigation with a water balance approach, 2) analyze the microclimate effects by irrigation timing to determine any changes to WDEL and evaporative demand, and 3) assess the quality and yield response of two urban crops. In 2019-21, we established 12 field …

Genomic Prediction Of Salinity Stress Tolerance In Maize (Zea Mays L.), Vishal Singh

Student Research Symposium

Maize is the largest crop in the world in terms of production. Utah, maize is a potential fodder crop. With increasing climate change, soil salinity is also increasing worldwide. Soil salinity is very detrimental to plants' growth and development and crop production. For a fodder crop, plant biomass is an important trait, and maize biomass is adversely affected by salinity stress, especially at the seedling stage. A Selection of salt-tolerant breeding material is a time-consuming process and its complexity is further increased by significant heterogeneity in soil salinity under field based evaluation. Genomic prediction is an emerging tool that can …

Microbial Community Of The Rhizosphere Of Ceanothus Velutinus Improves The Plant's Growth And Development Under Greenhouse Conditions, Jyothsna Ganesh

Student Research Symposium

Climatic change-induced environmental stresses affect crop production. Drought is such a stress which affect crop production and landscaping adversely. Native plants are great for low water use landscaping and can adapt to the natural environment. USU Center for Water-Efficient Landscaping has released a list of native plants that can be used for this purpose. This study focuses on a native plant Ceanothus velutinus (snowbrush) which is an evergreen plant native to western North America. It thrives well in harsh conditions and can act as ornamental plant in low water use landscaping but is difficult to propagate under landscape conditions. Here, …

Transgenic Expression Of Prunus Persica Salt Overly Sensitive 2 (Ppsos2) In Atsos2 Mutant Imparts Salt Tolerance In Arabidopsis, Vishal Singh

Student Research Symposium

Salinity is one of the major environmental stresses that affect crop growth and productivity. Almond crop has a great potential for Utah as a cash crop and salinity is one of the stresses affecting its growth and yield. Although almond trees are sensitive to salt stress, salinity-tolerant rootstocks can play a significant role in sustaining crop production in semiarid areas. Salinity tolerance has a complex mechanism with many genes acting in different pathways. Understanding the role of potential candidate genes is an important aspect of genomics assisted improvement of stress tolerance. In this study, functional complementation of the Prunus persica …

Comparative Study Of The Microbiome Of The Native Plant Ceanothus Velutinus (Snowbrush) From Different Locations And Greenhouse Studies, Jyothsna Ganesh

Student Research Symposium

Climatic change is one of the biggest threats to the ecosystem and biodiversity by enhancing environmental stresses. Environmental stresses such as biotic and abiotic stresses affect plant health and reduce crop production. The rhizosphere microbiome of a plant plays a significant role in a plant's defense against various biotic and abiotic stresses. In this study, we are investigating the microbiome diversity of bulk soil, rhizosphere, and endosphere of Ceanothus velutinus, snowbrush. Ceanothus is an evergreen native plant that is usually found in dry areas and thrives well in harsh conditions. The snowbrush samples were collected from different locations 1920m, 1950m, …

Deepnec: A Novel Alignment-Free Tool For The Characterization Of Nitrification-Related Enzymes Using Deep Learning, A Step Towards Comprehensive Understanding Of The Nitrogen Cycle, Naveen Duhan

Student Research Symposium

Abstract: Nitrification is an important microbial two-step transformation in the global nitrogen cycle, as it is the only natural process that produces nitrate within a system. The functional annotation of nitrification-related enzymes has a broad range of applications in metagenomics, agriculture, industrial biotechnology, etc. The time and resources needed for determining the function of enzymes experimentally are restrictively costly. Therefore, an accurate genome-scale computational prediction of the nitrification-related enzymes has become much more important.In this study, we developed an alignment-free computational approach to determine the nitrification-related enzymes from the sequence itself. We propose deepNEC, a novel end-to-end feature selection and …

Pyseqrna: An Automated Python Package For Advanced Rna Sequencing Data Analysis And Annotation, Naveen Duhan

Student Research Symposium

Abstract: With the advent of Next-Generation Sequencing (NGS) technologies, numerous data is being generated every day, however, streamlined analysis remains a big hurdle to efficiently use the technology. A large number of algorithms, statistical methods, and software tools have been developed in recent years to perform the individual analysis steps of various NGS applications. Some NGS applications data analysis procedures are therefore very complex, requiring several program tools to be downloaded for their various processing steps. There is a significant room for the development of scalable computing environments that link the individual software components to automated workflows to efficiently and …

Translating -Omics Big Data: Comprehensive Understanding Of Host-Pathogen Interactions To Control Bacterial Blight In Alfalfa Using Computational Approaches, Raghav Kataria

Student Research Symposium

Plant infectious diseases are a major threat to the crops, owing to economic losses to the agriculture industry worldwide. Molecular interactions between the host and pathogen play a critical role in understanding the basis of pathogenesis. Majority of the Pseudomonas syringae strains are known to cause frost injury in plants, amongst which, P. syringae pv. syringae ALF3 is asserted to be a causal organism of bacterial stem blight in Medicago sativa (alfalfa). We elucidated the genome-scale host-pathogen interactions (HPIs) between alfalfa and P. syringae using two intense computational approaches: interolog (homology-based) and the domain-based method (based on 3D structure of …

Is Mitigation Of Drought Stress By Zinc Oxide Nanoparticles Driven By A Nano-Specific Mechanism Or Mitigation Of Micronutrient Deficiency?, Justin Deakin

Student Research Symposium

It has been reported that zinc oxide (ZnO) nanoparticles (NPs) can promote drought tolerance in crops when used as soil amendments. However, many of these experiments were conducted in Zn-deficient growth media with no comparison to currently available Zn fertilization methods, making it unclear if the benefits from adding ZnO NPs were caused by a nano-specifc mechanism or simply by the mitigation of a micronutrient deficiency. A review of the literature shows that of 12 published experiments considering the effects of ZnO NPs on plant health, 5 out of 6 studies that did not include a comparison to currently available …

Nitrogen Use Efficiency And Soil Bioavailable Nitrogen In Corn Silage Production In A Semi-Arid Environment, Phearen Miller

Student Research Symposium

As agriculture intensifies, the world faces a dual challenge of increasing food production while reducing impacts of excess reactive nitrogen (N) in the environment. A field study examining different N sources in corn silage under semi-arid conditions was conducted at the Greenville farm in northern Utah (41°45’ N, 1111°48’52 W) since 2012. The experimental design is a randomized complete block design with four blocks and four treatments: control (no nitrogen), low ammonium sulfate (AS 112 kg N/ha), high ammonium sulfate (AS 224 kg N/ha), and steer manure compost (224 kg total N/ha). We examined yield, nitrogen use efficiency (NUE), and …

Sequenced-Based Paternity Analysis To Improve Breeding And Identify Self-Incompatibility Loci In Intermediate Wheatgrass (Thinopyrum Intermedium), Jared Crain, Steve Larson, Kevin Dorn, Traci Hagedorn, Lee Dehaan, Jesse Poland

Forage and Range Research Laboratory Publications

Key Message

Paternity assignment and genome-wide association analyses for fertility were applied to a Thinopyrum intermedium breeding program. A lack of progeny between combinations of parents was associated with loci near self-incompatibility genes.

Abstract

In outcrossing species such as intermediate wheatgrass (IWG, Thinopyrum intermedium), polycrossing is often used to generate novel recombinants through each cycle of selection, but it cannot track pollen-parent pedigrees and it is unknown how self-incompatibility (SI) genes may limit the number of unique crosses obtained. This study investigated the potential of using next-generation sequencing to assign paternity and identify putative SI loci in IWG. Using …

Design, Monitoring And Management Approaches For The Root-Zone In Microgravity, Scott B. Jones

Funded Research Records

No abstract provided.

A 100-M-Scale Modeling Study Of A Gale Event On The Lee Side Of A Long Narrow Mountain, Halie Xue, Jian Li, Tingting Qian, Hongping Gu

Plants, Soils, and Climate Faculty Publications

In this study, a gale event that occurred on the lee side of a long narrow mountain was investigated, together with the associated mountain flows, using a realistic-case large-eddy simulation (LES) that is based on the Weather Research and Forecasting Model. The mountain is located on the southeastern Tibetan Plateau, where approximately 58 gales occur annually, mostly in the afternoons during the winter season. Benefitting from realistic topography and high horizontal resolution as fine as 111 m, the LES can replicate features similar to the wind fields observed during the gale period. Investigation of the early morning wind structure over …

Salt Tolerance Of Sego Supremetm Plants, Asmita Paudel, Ji Jhong Chen, Youping Sun, Yuxiang Wang, Richard M. Anderson

Plants, Soils, and Climate Faculty Publications

Sego Supreme^TM is a designated plant breeding and introduction program at the Utah State University Botanical Center and the Center for Water Efficient Landscaping. This plant selection program introduces native and adapted plants to the arid West for aesthetic landscaping and water conservation. The plants are evaluated for characteristics such as color, flowering, ease of propagation, market demand, disease/pest resistance, and drought tolerance. However, salt tolerance has not been considered during the evaluation processes. Four Sego Supreme^TM plants [Aquilegia barnebyi (oil shale columbine), Clematis fruticosa (Mongolian gold clematis), Epilobium septentrionale (northern willowherb), and Tetraneuris acaulis var. arizonica …

Differences In Drought Tolerance Among Gisela® Cherry Rootstocks Determined Using Automated Weighing Lysimeters, Lance V. Stott, Brent Black, Bruce Bugbee

Plants, Soils, and Climate Faculty Publications

The Gisela® series of dwarfing rootstock are widely used because they enable high-density production, but they may be sensitive to drought. Drought tolerance may be associated with root-zone distribution and depth or with physiological adaptation to low water potential. Here we describe a novel technique for determining physiological tolerance to drought when root distribution is held constant. In two matching studies, we continuously measured transpiration of two groups of eight trees using a 16-container automated weighing lysimeter system in a greenhouse. With this system, Gisela® 3, 5, and 12 (G.3, G.5, and G.12) rootstocks were subjected to multiple, controlled drought …

Consecutive Extreme Flooding And Heat Wave In Japan: Are They Becoming A Norm?, Shih-Yu Simon Wang, Hyungjun Kim, Dim Coumou, Jin-Ho Yoon, Lin Zhao, Robert R. Gillies

Plants, Soils, and Climate Faculty Publications

In July 2018, Japan experienced two contrasting, yet consecutive, extreme events: a devastating flood in early July followed by unprecedented heat waves a week later. Death tolls from these two extreme events combined exceeded 300, accompanying tremendous economic losses (BBC: July 24, 2018; AP: July 30, 2018). Meteorological analysis on these 2018 events quickly emerged (JMA-TCC, 2018; Kotsuki et al., 2019; Tsuguti et al., 2019), highlighting several compound factors: a strengthened subtropical anticyclone, a deepened synoptic trough, and Typhoon Prapiroon that collectively enhanced the Baiu rainband (the Japanese summer monsoon), fostering heavy precipitation. The comprehensive study of these events, conducted …

On The Relationship Between North India Summer Monsoon Rainfall And East Equatorial Indian Ocean Warming, Ramesh Kumar Yadav, Mathew Koll Roxy

Plants, Soils and Climate Student Research

Generally, a strong north India summer-monsoon rainfall (NISR) is associated with anomalous upper troposphere ridge over northwest of India. This ridge triggers anomalous northerly winds over Tibetan Plateau and easterlies over India. The easterly anomaly over India reduces the tropospheric wind shear, while the northerly at Tibetan plateau allows frequent intrusions of high-latitude dry and cold meridional winds to interact with the lower-level relatively warm and moist easterly monsoonal flow, enhancing the NISR. The current study, using a suite of observations, reanalysis products and numerical model sensitivity experiments, explores the changes in NISR, and its association with the warming in …

Phosphorus Rate Effects With And Without Avail® On Dryland Winter Wheat In An Eroded Calcareous Soil, Ryan C. Hodges

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Soluble phosphorus fertilizer is bound in the soil rapidly after application in soils high in calcium. A fertilizer additive known as AVAIL® (J.R. Simplot Company) is purported to keep applied phosphorus fertilizer more available to plants by binding to soil minerals such as calcium, magnesium, and iron, thereby reducing phosphorus binding. This could prove useful due to the attraction of AVAIL® with cations such as Ca²⁺, but is fairly unstudied for dryland wheat production on alkaline, calcium-rich soils. The objective of this study is to evaluate the effect of low-rate fertilizer treatments with AVAIL® on dryland small grain …

Increased Variability Of Thailand's Chao Phraya River Peak Season Flow And Its Association With Enso Variability: Evidence From Tree Ring Δ18O, Chenxi Xu, Brendan M. Buckley, Parichart Promchote, S.-Y. Simon Wang, Nathsuda Pumijumnong, Wenling An, Masaki Sano, Takeshi Nakatsuka, Zhengtang Guo

Plants, Soils, and Climate Faculty Publications

We present a statistically robust reconstruction of Thailand's Chao Phraya River peak season streamflow (CPRPF) that spans the 202 years from 1804 to 2005 CE. Our reconstruction is based on tree ring δ¹⁸O series derived from three Pinus merkusii sites from Laos and Thailand. The regional δ¹⁸O index accounts for 57% of the observed variance of CPRPF. Spatial correlation and 21‐year running correlation analyses reveal that CPRPF is greatly influenced by regional precipitation variations associated with the El Niño–Southern Oscillation (ENSO). Periods of enhanced and reduced ENSO activity are associated with strong and weak ENSO‐streamflow correlation, …