Physical Sciences and Mathematics Commons^™

Measurement Error Modeling Applied To Phylogenetic Inference And Parametric Bootstrap Approach To Multifactor Anova Models With Unequal Variances And Unbalanced Data, Sarah Katharine Alver

Mathematics & Statistics ETDs

This dissertation includes two main topics. The first uses measurement error modeling to improve upon an existing method of inferring species trees from gene trees that were estimated with error. The second involves extending the parametric bootstrap (PB) approach, which was previously shown to work well for one- and two-way analysis of variance models with unequal variance and unbalanced data (heteANOVA), to multi-factor heteANOVA models. An overall framework using PB is presented. For each topic, the underlying theory is shown, and simulations and applications to empirical data are presented, demonstrating improvement over earlier methods. The proposed species tree inference method …