Physical Sciences and Mathematics Commons^™

Using Intelligent Prefetching To Reduce The Energy Consumption Of A Large-Scale Storage System, Brian Romoser, Ziliang Zong, Ribel Fares, Joal Wood, Rong Ge

Mathematics, Statistics and Computer Science Faculty Research and Publications

Many high performance large-scale storage systems will experience significant workload increases as their user base and content availability grow over time. The U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) center hosts one such system that has recently undergone a period of rapid growth as its user population grew nearly 400% in just about three years. When administrators of these massive storage systems face the challenge of meeting the demands of an ever increasing number of requests, the easiest solution is to integrate more advanced hardware to existing systems. However, additional investment in hardware may significantly increase the …

The Log-Beta Generalized Half-Normal Regression Model, Rodrigo R. Pescim, Edwin M. M. Ortega, Gauss M. Cordeiro, Clarice G. B. Demtrio, Gholamhossein Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

We introduce a log-linear regression model based on the beta generalized half-normal distribution (Pescim et al., 2010). We formulate and develop a log-linear model using a new distribution so-called the log-beta generalized half normal distribution. We derive expansions for the cumulative distribution and density functions which do not depend on complicated functions. We obtain formal expressions for the moments and moment generating function. We characterize the proposed distribution using a simple relationship between two truncated moments. An advantage of the new distribution is that it includes as special sub-models classical distributions reported in the lifetime literature. We also show that …

Road Systems And Betweenness, Paul Bankston

Mathematics, Statistics and Computer Science Faculty Research and Publications

A road system is a collection of subsets of a set—the roads—such that every singleton subset is a road in the system and every doubleton subset is contained in a road. The induced ternary (betweenness) relation is defined by saying that a point c lies between points a and b if c is an element of every road that contains both a and b . Traditionally, betweenness relations have arisen from a plethora of other structures on a given set, reflecting intuitions that range from the order-theoretic to the geometric and topological. In this paper we initiate a study …

Assessing Protein Conformational Sampling Methods Based On Bivariate Lag-Distributions Of Backbone Angles, Mehdi Maadooliat, Xin Gao, Jianhua Z. Huang

Mathematics, Statistics and Computer Science Faculty Research and Publications

Despite considerable progress in the past decades, protein structure prediction remains one of the major unsolved problems in computational biology. Angular-sampling-based methods have been extensively studied recently due to their ability to capture the continuous conformational space of protein structures. The literature has focused on using a variety of parametric models of the sequential dependencies between angle pairs along the protein chains. In this article, we present a thorough review of angular-sampling-based methods by assessing three main questions: What is the best distribution type to model the protein angles? What is a reasonable number of components in a mixture model …

Progressive Reliability Method And Its Application To Offshore Mooring Systems, Mir Emad Mousavi, Paolo Gardoni, Mehdi Maadooliat

Mathematics, Statistics and Computer Science Faculty Research and Publications

Assessing the reliability of complex systems (e.g. structures) is essential for a reliability-based optimal design that balances safety and costs of such systems. This paper proposes the Progressive Reliability Method (PRM) for the quantification of the reliability of complex systems. The proposed method is a closed-form solution for calculating the probability of failure. The new method is flexible to the definition of “failure” (i.e., can consider serviceability and ultimate-strength failures) and uses the rules of probability theory to estimate the failure probability of the system or its components. The method is first discussed in general and then illustrated in two …

Characterizations Of Distribution Of Ratio Of Rayleigh Random Variables, Gholamhossein Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

Various characterizations of the distribution of the ratio of two independent Rayleigh random variables are presented. These characterizations are based, on a truncated moment; on hazard function; and on certain functions of order statistics.

An Exploratory Study Of Pre-Service Middle School Teachers’ Knowledge Of Algebraic Thinking, Marta Magiera, Leigh A. Van Den Kieboom, John C. Moyer

Mathematics, Statistics and Computer Science Faculty Research and Publications

Using algebraic habits of mind as a framework, and focusing on thinking about functions and how they work, we examined the relationship between 18 pre-service middle school teachers’ ability to use the features of the algebraic thinking (AT) habit of mind “Building Rules to Represent Functions” and their ability to recognize and interpret the features of the same AT habit of mind in middle school students. We assessed the pre-service teachers’ own ability to use the AT habit of mind Building Rules to Represent Functions by examining their solutions to algebra-based tasks in a semester-long mathematics content course. We assessed …

The Semigroups B2 And B0 Are Inherently Nonfinitely Based, As Restriction Semigroups, Peter R. Jones

Mathematics, Statistics and Computer Science Faculty Research and Publications

The five-element Brandt semigroup B₂ and its four-element subsemigroup B₀, obtained by omitting one nonidempotent, have played key roles in the study of varieties of semigroups. Regarded in that fashion, they have long been known to be finitely based. The semigroup B₂ carries the natural structure of an inverse semigroup. Regarded as such, in the signature {⋅, ^-1}, it is also finitely based. It is perhaps surprising, then, that in the intermediate signature of restriction semigroups — essentially, "forgetting" the inverse operation x ↦ x^-1 and retaining the induced operations x ↦ x^{+ …}

Sub-Independence: An Expository Perspective, Gholamhossein Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

Limit theorems as well as other well-known results in probability and statistics are often based on the distribution of the sums of independent random variables. The concept of sub-independence, which is much weaker than that of independence, is shown to be sufficient to yield the conclusions of these theorems and results. It also provides a measure of dissociation between two random variables which is much stronger than uncorrelatedness.

Bayesian Decision Theoretic Approach To Directional Multiple Hypotheses Problems, Naveen K. Bansal, Klaus J. Miescke

Mathematics, Statistics and Computer Science Faculty Research and Publications

A multiple hypothesis problem with directional alternatives is considered in a decision theoretic framework. Skewness in the alternatives is considered, and it is shown that this skewness permits the Bayes rules to possess certain advantages when one direction of the alternatives is more important or more probable than the other direction. Bayes rules subject to constraints on certain directional false discovery rates are obtained, and their performances are compared with a traditional FDR rule through simulation. We also analyzed a gene expression data using our methodology, and compare the results to that of a FDR method.

An Investigation Of Teachers' Intentions And Reflections About Using Standards-Based And Traditional Textbooks In The Classroom, Bikai Nie, Tony Freedman, Stephen Hwang, Ning Wang, John Moyer, Jinfa Cai

Mathematics, Statistics and Computer Science Faculty Research and Publications

This study analyzed teachers’ intentions for and reflections on their use of Standards-based [Connected Mathematics Program (CMP)] textbooks and traditional (non-CMP) mathematics textbooks to guide instruction. In this investigation of the interplay between textbooks and instruction, we focused on learning goals, instructional tasks, teachers’ anticipation of students’ difficulties, and their perceptions of students’ achievement of learning goals. All of these are aspects of teachers’ intentions and reflections that have proved fruitful in comparing the roles of the CMP and non-CMP mathematics textbooks in our Longitudinal Investigation of the Effect of Curriculum on Algebra Learning project. Whereas the cognitive level …

The Pitman Inequality For Exchangeable Random Vectors, J. Behboodian, Naveen K. Bansal, Gholamhossein Hamedani, Hans Volkmer

Mathematics, Statistics and Computer Science Faculty Research and Publications

In this short article the following inequality called the “Pitman inequality” is proved for the exchangeable random vector (X₁,X₂,…,X_n) without the assumption of continuity and symmetry for each component X_i:

P(|1n∑i=1nXi|≤|∑i=1nαiXi|)≥12 ,

where all αi≥0 are special weights with ∑i=1nαi=1.

Characterizations Of Distributions Of Ratio Of Certain Independent Random Variables, Gholamhossein Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

Various characterizations of the distributions of the ratio of two independent gamma and exponential random variables as well as that of two independent Weibull random variables are presented. These characterizations are based, on a simple relationship between two truncated moments ; on hazard function ; and on functions of order statistics.

On Generalized Gamma Convolution Distributions, Gholamhossein Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

We present here characterizations of certain families of generalized gamma convolution distributions of L. Bondesson based on a simple relationship between two truncated moments. We also present a list of well-known random variables whose distributions or the distributions of certain functions of them belong to the class of generalized gamma convolutions.

Extremal H-Colorings Of Graphs With Fixed Minimum Degree, John Engbers

Mathematics, Statistics and Computer Science Faculty Research and Publications

For graphs G and H, a homomorphism from G to H, or H-coloring of G, is a map from the vertices of G to the vertices of H that preserves adjacency. When H is composed of an edge with one looped endvertex, an H-coloring of G corresponds to an independent set in G. Galvin showed that, for sufficiently large n, the complete bipartite graph K_δ,n-δ is the n-vertex graph with minimum degree δ that has the largest number of independent sets.

In this paper, we begin the project of generalizing this …

Toward An Mhealth Intervention For Smoking Cessation, Golam Mushih Tanimul Ahsan, Ivor D. Addo, Sheikh Iqbal Ahamed, Daniel Petereit, Shalini Kanekar, Linda Burhansstipanov, Linda U. Krebs

Mathematics, Statistics and Computer Science Faculty Research and Publications

The prevalence of tobacco dependence in the United States (US) remains alarming. Invariably, smoke-related health problems are the leading preventable causes of death in the US. Research has shown that a culturally tailored cessation counseling program can help reduce smoking and other tobacco usage. In this paper, we present a mobile health (mHealth) solution that leverages the Short Message Service (SMS) or text messaging feature of mobile devices to motivate behavior change among tobacco users. Our approach implements the Theory of Planned Behavior (TPB) and a phase-based framework. We make contributions to improving previous mHealth intervention approaches by delivering personalized …

Characterizations Of Certain Recently Introduced Distributions, Gholamhossein Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

Various characterizations of the Beta Weibull Geometric distribution of Bidram et al. (2011), the New Generalized Exponential distribution of Bidram et al. (2012), and the Gamma Exponentiated Weibull distribution of Pinho et al. (2012) are presented. These characterizations are based on: (i) a simple relationship between two truncated moments (ii) certain functions of the nth order statistic, and (iii) certain functions of the 1st order statistics.

Age-Specific Signatures Of Glioblastoma At The Genomic, Genetic, And Epigenetic Levels, Serdar Bozdag, Aiguo Li, Gregory Riddick, Yuri Kotliarov, Mehmet Baysan, Fabio M. Iwamoto, Margaret C. Cam, Svetlana Kotliarova, Howard A. Fine

Mathematics, Statistics and Computer Science Faculty Research and Publications

Age is a powerful predictor of survival in glioblastoma multiforme (GBM) yet the biological basis for the difference in clinical outcome is mostly unknown. Discovering genes and pathways that would explain age-specific survival difference could generate opportunities for novel therapeutics for GBM. Here we have integrated gene expression, exon expression, microRNA expression, copy number alteration, SNP, whole exome sequence, and DNA methylation data sets of a cohort of GBM patients in The Cancer Genome Atlas (TCGA) project to discover age-specific signatures at the transcriptional, genetic, and epigenetic levels and validated our findings on the REMBRANDT data set. We found major …

Combinatorial Pooling Enables Selective Sequencing Of The Barley Gene Space, Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close

Mathematics, Statistics and Computer Science Faculty Research and Publications

For the vast majority of species – including many economically or ecologically important organisms, progress in biological research is hampered due to the lack of a reference genome sequence. Despite recent advances in sequencing technologies, several factors still limit the availability of such a critical resource. At the same time, many research groups and international consortia have already produced BAC libraries and physical maps and now are in a position to proceed with the development of whole-genome sequences organized around a physical map anchored to a genetic map. We propose a BAC-by-BAC sequencing protocol that combines combinatorial pooling design and …

Direct Eit Reconstructions Of Complex Admittivities On A Chest-Shaped Domain In 2-D, Sarah J. Hamilton, Jennifer L. Mueller

Mathematics, Statistics and Computer Science Faculty Research and Publications

Electrical impedance tomography (EIT) is a medical imaging technique in which current is applied on electrodes on the surface of the body, the resulting voltage is measured, and an inverse problem is solved to recover the conductivity and/or permittivity in the interior. Images are then formed from the reconstructed conductivity and permittivity distributions. In the 2-D geometry, EIT is clinically useful for chest imaging. In this work, an implementation of a D-bar method for complex admittivities on a general 2-D domain is presented. In particular, reconstructions are computed on a chest-shaped domain for several realistic phantoms including a simulated pneumothorax, …

A Graph-Theoretical Approach To The Selection Of The Minimum Tiling Path From A Physical Map, Serdar Bozdag

Mathematics, Statistics and Computer Science Faculty Research and Publications

The problem of computing the minimum tiling path (MTP) from a set of clones arranged in a physical map is a cornerstone of hierarchical (clone-by-clone) genome sequencing projects. We formulate this problem in a graph theoretical framework, and then solve by a combination of minimum hitting set and minimum spanning tree algorithms. The tool implementing this strategy, called FMTP, shows improved performance compared to the widely used software FPC. When we execute FMTP and FPC on the same physical map, the MTP produced by FMTP covers a higher portion of the genome, and uses a smaller number of clones. For …

Mind The Gaps, Paul Bankston

Mathematics, Statistics and Computer Science Faculty Research and Publications

No abstract provided.

Rattus Model Utilizing Selective Pulmonary Ischemia Induces Bronchiolitis Obliterans Organizing Pneumonia, John C. Densmore, Paul M. Jeziorczak, Anne V. Clough, Kirkwood A. Pritchard Jr, Breana Cummens, Meetha Medhora, Arjun Rao, Elizabeth R. Jacobs

Mathematics, Statistics and Computer Science Faculty Research and Publications

Bronchiolitis obliterans organizing pneumonia (BOOP), a morbid condition when associated with lung transplant and chronic lung disease, is believed to be a complication of ischemia. Our goal was to develop a simple and reliable model of lung ischemia in the Sprague-Dawley rat that would produce BOOP. Unilateral ischemia without airway occlusion was produced by an occlusive slipknot placed around the left main pulmonary artery. Studies were performed 7 days later. Relative pulmonary and systemic flow to each lung was measured by injection of technetium Tc 99m macroaggregated albumin. Histological sections were examined for structure and necrosis and scored for BOOP. …

3e: Energy-Efficient Elastic Scheduling For Independent Tasks In Heterogeneous Computing Systems, Xiaomin Zhu, Rong Ge, Jinguang Sun, Chuan He

Mathematics, Statistics and Computer Science Faculty Research and Publications

Reducing energy consumption is a major design constraint for modern heterogeneous computing systems to minimize electricity cost, improve system reliability and protect environment. Conventional energy-efficient scheduling strategies developed on these systems do not sufficiently exploit the system elasticity and adaptability for maximum energy savings, and do not simultaneously take account of user expected finish time. In this paper, we develop a novel scheduling strategy named energy-efficient elastic (3E) scheduling for aperiodic, independent and non-real-time tasks with user expected finish times on DVFS-enabled heterogeneous computing systems. The 3E strategy adjusts processors’ supply voltages and frequencies according to the system workload, and …

The Performance Of Mlem For Dynamic Imaging From Simulated Few-View, Multi-Pinhole Spect, Dan Ma, Paul Arthur Wolf, Anne V. Clough, Taly Gilat Schmidt

Mathematics, Statistics and Computer Science Faculty Research and Publications

Stationary small-animal SPECT systems are being developed for rapid dynamic imaging from limited angular views. This work quantified, through simulations, the performance of Maximum Likelihood Expectation Maximization (MLEM) for reconstructing a time-activity curve (TAC) with uptake duration of a few seconds from a stationary, three-camera multi-pinhole SPECT system. The study also quantified the benefits of a heuristic method of initializing the reconstruction with a prior image reconstructed from a conventional number of views, for example from data acquired during the late-study portion of the dynamic TAC. We refer to MLEM reconstruction initialized by a prior-image initial guess (IG) as MLEM …

Characterizations Of Exponentiated Distributions, Gholamhossein Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

Various characterizations of the class of exponentiated distributions are presented. These characterizations are based on a simple relationship between two truncated moments and based on functions of the nth order statistic. The results are applied to certain well-known members of this class.

Genome-Wide Associations Of Signaling Pathways In Glioblastoma Multiforme, Serdar Bozdag, Stefan Wuchty, Alexei Vazquez, Peter O. Bauer

Mathematics, Statistics and Computer Science Faculty Research and Publications

Background: eQTL analysis is a powerful method that allows the identification of causal genomic alterations, providing an explanation of expression changes of single genes. However, genes mediate their biological roles in groups rather than in isolation, prompting us to extend the concept of eQTLs to whole gene pathways. Methods: We combined matched genomic alteration and gene expression data of glioblastoma patients and determined associations between the expression of signaling pathways and genomic copy number alterations with a non-linear machine learning approach. Results: Expectedly, over-expressed pathways were largely associated to tag-loci on chromosomes with signature alterations. Surprisingly, tag-loci that were associated …

Rssi Based Indoor Localization For Smartphone Using Fixed And Mobile Wireless Node, Md O. Gani, Casey O'Brien, Sheikh Iqbal Ahamed, Roger O. Smith

Mathematics, Statistics and Computer Science Faculty Research and Publications

Nowadays with the dispersion of wireless networks, smartphones and diverse related services, different localization techniques have been developed. Global Positioning System (GPS) has a high rate of accuracy for outdoor localization but the signal is not available inside of buildings. Also other existing methods for indoor localization have low accuracy. In addition, they use fixed infrastructure support. In this paper, we present a novel system for indoor localization, which also works well outside. We have developed a mathematical model for estimating location (distance and direction) of a mobile device using wireless technology. Our experimental results on Smartphones (Android and iOS) …

Cross‐Campus Collaboration: A Scientometric And Network Case Study Of Publication Activity Across Two Campuses Of A Single Institution, Jeremy Birnholtz, Shion Guha, Y. Connie Yuan, Geri Gay, Caren Heller

Mathematics, Statistics and Computer Science Faculty Research and Publications

Team science and collaboration have become crucial to addressing key research questions confronting society. Institutions that are spread across multiple geographic locations face additional challenges. To better understand the nature of cross‐campus collaboration within a single institution and the effects of institutional efforts to spark collaboration, we conducted a case study of collaboration at Cornell University using scientometric and network analyses. Results suggest that cross‐campus collaboration is increasingly common, but is accounted for primarily by a relatively small number of departments and individual researchers. Specific researchers involved in many collaborative projects are identified, and their unique characteristics are described. Institutional …

Robust Estimation Of The Correlation Matrix Of Longitudinal Data, Mehdi Maadooliat, Mohsen Pourahmadi, Jianhua Z. Huang

Mathematics, Statistics and Computer Science Faculty Research and Publications

We propose a double-robust procedure for modeling the correlation matrix of a longitudinal dataset. It is based on an alternative Cholesky decomposition of the form Σ=DLL ^⊤ D where D is a diagonal matrix proportional to the square roots of the diagonal entries of Σ and L is a unit lower-triangular matrix determining solely the correlation matrix. The first robustness is with respect to model misspecification for the innovation variances in D, and the second is robustness to outliers in the data. The latter is handled using heavy-tailed multivariate t-distributions with unknown degrees of freedom. We …