Physical Sciences and Mathematics Commons^™

Using Spatiotemporal Methods To Fill Gaps In Energy Usage Interval Data, Kristin K. Graves

Theses and Dissertations

Researchers analyzing spatiotemporal or panel data, which varies both in location and over time, often find that their data has holes or gaps. This thesis explores alternative methods for filling those gaps and also suggests a set of techniques for evaluating those gap-filling methods to determine which works best.

Shape-Invariant Models For Non-Independent Functional Data, Wen Yang

Theses and Dissertations

Non-independent functional data frequently arise in evolutionary and biological studies. It is important to possess models that incorporate correlations between subjects and appropriately describe the relationships between response and covariates. The variation in the response curves is usually a mixture of amplitude and phase variation, both of which should be explicitly modeled for efficient statistical inference. In this dissertation we propose a shape-invariant model that explicitly addresses amplitude and phase variability. We incorporate genetic and environmental random effects for the parameters, and use the additive genetic information matrix in the representation of the covariance matrices to make the unobservable genetic …

Associated Hypotheses In Linear Models For Unbalanced Data, Carlos J. Soto

Theses and Dissertations

When looking at factorial experiments there are several natural hypotheses that can be tested. In a two-factor or a by b design, the three null hypotheses of greatest interest are the absence of each main effect and the absence of interaction. There are two ways to construct the numerator sum of squares for testing these, namely either adjusted or sequential sums of squares (also known as type I and type III in SAS). Searle has pointed out that, for unbalanced data, a sequential sum of squares for one of these hypotheses is equal (with probability 1) to an adjusted sum …

Graph-Based Regularization In Machine Learning: Discovering Driver Modules In Biological Networks, Xi Gao

Theses and Dissertations

Curiosity of human nature drives us to explore the origins of what makes each of us different. From ancient legends and mythology, Mendel's law, Punnett square to modern genetic research, we carry on this old but eternal question. Thanks to technological revolution, today's scientists try to answer this question using easily measurable gene expression and other profiling data. However, the exploration can easily get lost in the data of growing volume, dimension, noise and complexity. This dissertation is aimed at developing new machine learning methods that take data from different classes as input, augment them with knowledge of feature relationships, …

Bayesian Semi- And Non-Parametric Analysis For Spatially Correlated Survival Data, Haiming Zhou

Theses and Dissertations

Flexible incorporation of both geographical patterning and risk effects in cancer survival models is becoming increasingly important, due in part to the recent availability of large cancer registries. The analysis of spatial survival data is challenged by the presence of spatial dependence and censoring for survival times. Accurately modeling the risk factors and geographical pattern that explain the differences in survival is particularly of interest. Within this dissertation, the first chapter reviews commonlyused baseline priors, semiparametric and nonparametric Bayesian survival models and recent approaches for accommodating spatial dependence, both conditional and marginal. The last three chapters contribute three flexible survival …

Controlling For Confounding When Association Is Quantified By Area Under The Roc Curve, Hadiza I. Galadima

Theses and Dissertations

In the medical literature, there has been an increased interest in evaluating association between exposure and outcomes using nonrandomized observational studies. However, because assignments to exposure are not done randomly in observational studies, comparisons of outcomes between exposed and non-exposed subjects must account for the effect of confounders. Propensity score methods have been widely used to control for confounding, when estimating exposure effect. Previous studies have shown that conditioning on the propensity score results in biased estimation of odds ratio and hazard ratio. However, there is a lack of research into the performance of propensity score methods for estimating the …

High-Throughput Data Analysis: Application To Micronuclei Frequency And T-Cell Receptor Sequencing, Mateusz Makowski

Theses and Dissertations

The advent of high-throughput sequencing has brought about the creation of an unprecedented amount of research data. Analytical methodology has not been able to keep pace with the plethora of data being produced. Two assays, ImmunoSEQ and the cytokinesisblock micronucleus (CBMN), that both produce count data and have few methods available to analyze them are considered.

ImmunoSEQ is a sequencing assay that measures the beta T-cell receptor (TCR) repertoire. The ImmunoSEQ assay was used to describe the TCR repertoires of patients that have undergone hematopoietic stem cell transplantation (HSCT). Several different methods for spectratype analysis were extended to the TCR …

Considerations For Screening Designs And Follow-Up Experimentation, Robert D. Leonard

Theses and Dissertations

The success of screening experiments hinges on the effect sparsity assumption, which states that only a few of the factorial effects of interest actually have an impact on the system being investigated. The development of a screening methodology to harness this assumption requires careful consideration of the strengths and weaknesses of a proposed experimental design in addition to the ability of an analysis procedure to properly detect the major influences on the response. However, for the most part, screening designs and their complementing analysis procedures have been proposed separately in the literature without clear consideration of their ability to perform …

Proof-Of-Concept Of Environmental Dna Tools For Atlantic Sturgeon Management, Jameson Hinkle

Theses and Dissertations

Abstract

The Atlantic Sturgeon (Acipenser oxyrinchus oxyrinchus, Mitchell) is an anadromous species that spawns in tidal freshwater rivers from Canada to Florida. Overfishing, river sedimentation and alteration of the river bottom have decreased Atlantic Sturgeon populations, and NOAA lists the species as endangered. Ecologists sometimes find it difficult to locate individuals of a species that is rare, endangered or invasive. The need for methods less invasive that can create more resolution of cryptic species presence is necessary. Environmental DNA (eDNA) is a non-invasive means of detecting rare, endangered, or invasive species by isolating nuclear or mitochondrial DNA (mtDNA) from the …

Comparing Welch's Anova, A Kruskal-Wallis Test And Traditional Anova In Case Of Heterogeneity Of Variance, Hangcheng Liu

Theses and Dissertations

Analysis of variance (ANOVA) is a robust test against the normality assumption, but it may be inappropriate when the assumption of homogeneity of variance has been violated. Welch ANOVA and the Kruskal-Wallis test (a non-parametric method) can be applicable for this case. In this study we compare the three methods in empirical type I error rate and power, when heterogeneity of variance occurs and find out which method is the most suitable with which cases including balanced/unbalanced, small/large sample size, and/or with normal/non-normal distributions.