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Full-Text Articles in Physical Sciences and Mathematics

Analysis And Methodology Of Helical And Flexible Homopolymer Monte Carlo Simulations, Nathan Roberts Apr 2023

Analysis And Methodology Of Helical And Flexible Homopolymer Monte Carlo Simulations, Nathan Roberts

Honors College Theses

The purpose of my work is to analyze the results of Monte Carlo simulations of various types of polymers: a helical homopolymer and a flexible homopolymer. Specific applications of Monte Carlo polymer simulations and parallel tempering replica exchanges are presented. Using temporal analysis, I aim to measure the efficiency of each type of simulation as it relates to equilibration time. For the helical homopolymer model, equilibration time is expanded upon to analyze the rate of structure generation and relevant hyper-phase diagram. Stable states for helical homopolymers will use data generated from parallel tempering replica exchange Monte Carlo simulations created by …


Circulation Transfer Between Adjacent Target Bose-Einstein Condensates, Charles B. Henry May 2022

Circulation Transfer Between Adjacent Target Bose-Einstein Condensates, Charles B. Henry

Honors College Theses

We propose an atomtronic rotation sensor design that consists of an array of Bose-Einstein Condensates (BECs) that are confined in a double-target-array potential. The rotation sensor's purpose is to measure the speed of the rotating frame, with respect to the “fixed stars", the sensor rests in. The atomtronic system is an ultracold gas of sodium atoms that have been compressed by laser light into a thin quasi-2D horizontal plane and further confined in the horizontal plane by a double-target-array potential. A target BEC is a combination of disk BEC that is surrounded by a ring BEC. A double-target BEC is …


Effects Of Anharmonicity In A Dual-Sagnac Interferometer, Stephen Thomas Dec 2021

Effects Of Anharmonicity In A Dual-Sagnac Interferometer, Stephen Thomas

Honors College Theses

A recent experiment implemented a dual Sagnac atom interferometer (AI) for rotation sensing using a Bose-Einstein condensate (BEC) confined in a TOP-trap potential. The BEC is split twice by laser light to create two pairs of counter-orbiting clouds in a lowest-order harmonic potential with each pair acting as a separate Sagnac interferometer. After one orbit the two overlapping cloud pairs are split again and the interference patterns are inferred from the population of atoms in the zero-momentum state. We have simulated the impact of the presence of anharmonic terms in the potential on the performance of the AI as measured …


Abhd5 Induced Morphological Changes On Model Membrane Systems, Nasser S. Junedi May 2021

Abhd5 Induced Morphological Changes On Model Membrane Systems, Nasser S. Junedi

Honors College Theses

Proper regulation of neutral lipid storage (lipogenesis) and release (lipolysis) are critical molecular processes localized to an organelle called the Lipid Droplet (LD). The LD consists of a core with neutral lipids such as triacylglycerols (TAGs) and sterol esters surrounded by a phospholipid monolayer. Dysregulation of the processes localized to the LD are involved in the pathology of various diseases such as Neutral Lipid Storage Disease, diabetes, stroke and cancer. The non-enzymatic protein ABHD5 (α-β Hydrolase Domain-Containing Protein 5), is thought to play a key role in the process of lipolysis by forming homo-oligomers on the surface of the LD …


Silicon Quantum Dots Conjunctive With Stable Radicals: Potential Application In Non-Invasive Cancer Diagnostics, Daylan R. Post May 2020

Silicon Quantum Dots Conjunctive With Stable Radicals: Potential Application In Non-Invasive Cancer Diagnostics, Daylan R. Post

Honors College Theses

Quantum Dots, and nanomaterials in general, are one of the most promising areas of current physical study, especially their potential medical uses. In this study we introduced Nitroxide free radicals into a Silicon Quantum Dot (SiQD) solution and conducted experiments on the modified SiQDs in order to characterize their physical properties. We gathered emission, excitation, absorption and electron spin resonance (ESR) spectra of both modified and unmodified SiQDs. Previous studies have shown the possibility of using proteins as markers for cancer detection. Our measurements show the potential of using the interaction between these protein markers and SiQDs as a form …


Quartic Metamaterials: The Inverse Method, Perturbations, And Bulk Optical Neutrality, Thomas Mulkey Apr 2019

Quartic Metamaterials: The Inverse Method, Perturbations, And Bulk Optical Neutrality, Thomas Mulkey

Honors College Theses

A primary goal of photonics is designing material structures that support predetermined electromagnetic field distributions. We have developed an inverse method to determine material parameters for a quartic metamaterial from six desired plane waves. This work inspired us to study how perturbations to the parameters can result in optical neutrality.


Developing Tools For A Precision Measurement Of Newton's Gravitational Constant Using Atom Interferometry, Elizabeth Ashwood May 2017

Developing Tools For A Precision Measurement Of Newton's Gravitational Constant Using Atom Interferometry, Elizabeth Ashwood

Honors College Theses

We propose a new atom interferometry scheme for making a precision measurement of Newton's Gravitational constant (Big G) using NASA's Cold-Atom Laboratory which is scheduled to be deployed to the International Space Station in 2017. The proposed interferometer consists of splitting a harmonically confined Bose-Einstein condensate into multiple pieces. In a perfect harmonic potential, all of the pieces come to rest at the same time, at which point the harmonic trap is turned off. These initially motionless condensate clouds then accumulate different phases due to the relative velocity they develop caused by the gravitational attraction of a nearby source mass. …


The Construction And Characterization Of A Magneto-Optical Trap For Rubidium-87 And Electromagnetically-Induced Transparency In Rubidium-87 In A Vapor Cell, Yu Liu May 2014

The Construction And Characterization Of A Magneto-Optical Trap For Rubidium-87 And Electromagnetically-Induced Transparency In Rubidium-87 In A Vapor Cell, Yu Liu

Honors College Theses

Recent years have observed fast developments in neutral atomic vapor based quantum information storage technology. The technique utilizes light fields in the optical wavelength region as signal carrier and retriever and neutral atomic systems (e.g. single atoms, ensembles of atoms, atom-like defects in solids) as storage media. Photons are robust carriers of information due to their high velocity (c = 2.998 x 108 m/s) and ease of transportation (they propagate rectilinearly with low loss). Their high mobility, however, makes it a challenging task to spatially localize and therefore store them. Atoms (or atom-like systems), on the other hand, can …


Dipole Bound Excited States Of Polycyclic Aromatic Hydrocarbons Containing Nitrogen And Their Relation To The Interstellar Medium, Mallory L. Theis Apr 2014

Dipole Bound Excited States Of Polycyclic Aromatic Hydrocarbons Containing Nitrogen And Their Relation To The Interstellar Medium, Mallory L. Theis

Honors College Theses

Polycyclic aromatic hydrocarbons (PAHs) are the most abundant type of molecule present in the interstellar medium (ISM). It has been hypothesized that nitrogen replacement within a ring is likely for PAHs present in the ISM. Additionally, electrons, protons, and hydrogen atoms are readily added to or removed from PAHs creating a truly diverse set of chemistries in various interstellar regions. The presence of a nitrogen within a PAH (called a PANH herein) that is additionally dehydrogenated leads to a neutral radical with a large dipole moment. It has recently been shown through the use of high-level quantum chemical computations for …