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Full-Text Articles in Physical Sciences and Mathematics

Numerical Study Of The Diapycnal Flow Through A Tidal Front With Passive Tracers, Chingming Dong, Robert Houghton, Hsien-Wang Ou, Dake Chen, Tal Ezer Jan 2004

Numerical Study Of The Diapycnal Flow Through A Tidal Front With Passive Tracers, Chingming Dong, Robert Houghton, Hsien-Wang Ou, Dake Chen, Tal Ezer

CCPO Publications

A two-dimensional numerical model is used to study the diapycnal flow through a tidal front with passive tracers. In a basic numerical experiment a passive tracer is released into the bottom water at the offshore edge of a tidal front, and it subsequently moves on-bank with a velocity that decreases with time. This qualitatively agrees with a recent field experiment using a dye tracer on Georges Bank. Additional experiments are performed to investigate the sensitivity of the tracer dispersion to the tidal phase and the location of tracer release within the front. As the release point is moved on-bank across …


Satellite Evidence Of Hurricane-Induced Phytoplankton Blooms In An Oceanic Desert, S. M. Babin, J. A. Carton, T. D. Dickey, J. D. Wiggert Jan 2004

Satellite Evidence Of Hurricane-Induced Phytoplankton Blooms In An Oceanic Desert, S. M. Babin, J. A. Carton, T. D. Dickey, J. D. Wiggert

CCPO Publications

The physical effects of hurricanes include deepening of the mixed layer and decreasing of the sea surface temperature in response to entrainment, curl-induced upwelling, and increased upper ocean cooling. However, the biological effects of hurricanes remain relatively unexplored. In this paper, we examine the passages of 13 hurricanes through the Sargasso Sea region of the North Atlantic during the years 1998 through 2001. Remotely sensed ocean color shows increased concentrations of surface chlorophyll within the cool wakes of the hurricanes, apparently in response to the injection of nutrients and/or biogenic pigments into the oligotrophic surface waters. This increase in post-storm …


Lagrangian Modelling Studies Of Antarctic Krill (Euphausia Superba) Swarm Formation, Eileen E. Hofmann, A. G. Edward Haskell, John M. Klinck, Cathy M. Lascara Jan 2004

Lagrangian Modelling Studies Of Antarctic Krill (Euphausia Superba) Swarm Formation, Eileen E. Hofmann, A. G. Edward Haskell, John M. Klinck, Cathy M. Lascara

CCPO Publications

A two-dimensional Lagrangian particle model was developed to examine the spatial distribution of Antarctic krill (Euphausia superba). The time-dependent location of particles, which represent krill individuals, is determined by random diffusion, foraging activity, and movement induced by the presence of neighbours. Foraging activity is based on prescribed food conditions and is such that krill swim slower and turn more frequently in areas of high food concentration. The presence or absence of neighbours either disperses krill, if the local concentrations become too dense, or coalesces krill, if concentrations become too dilute, respectively. Predation on krill is included and affects …


A Modelling Study Of The Influence Of Environment And Food Supply On Survival Of Crassostrea Gigas Larvae, Eileen E. Hofmann, Eric N. Powell, Eleanor A. Bochenek, John M. Klinck Jan 2004

A Modelling Study Of The Influence Of Environment And Food Supply On Survival Of Crassostrea Gigas Larvae, Eileen E. Hofmann, Eric N. Powell, Eleanor A. Bochenek, John M. Klinck

CCPO Publications

A biochemically based model was developed to simulate the growth, development, and metamorphosis of larvae of the Pacific oyster (Crassostrea gigas). The unique characteristics of the model are that it: (1) defines larvae in terms of their protein, neutral lipid, polar lipid, carbohydrate, and ash content; (2) tracks weight separately from length to follow larval condition; and (3) includes genetic variation in growth efficiency and egg quality to better simulate cohort population dynamics. The model includes parameterizations for filtration, ingestion, and respiration, which determine larval growth rate, and processes controlling larval mortality and metamorphosis. Changes in larval tissue …


On The Sensitivity Of The West Caribbean Sea Circulation To Tides, Wind, And Mesoscale Ocean Eddies: A Three-Dimensional Ocean Model Study, Deeptha V. Thattai, Tal Ezer, Bjorn Kjerfve Jan 2004

On The Sensitivity Of The West Caribbean Sea Circulation To Tides, Wind, And Mesoscale Ocean Eddies: A Three-Dimensional Ocean Model Study, Deeptha V. Thattai, Tal Ezer, Bjorn Kjerfve

CCPO Publications

A three-dimensional, primitive equation ocean model is used to study the circulation in the West Caribbean Sea (WCS) region, and to test the sensitivity of the coastal flow to various forcing fields such as tides, climatological wind, and Caribbean eddies. The model domain is bordered by latitudes 15 – 22 degrees N and longitudes 76 – 87 degrees W, with the MesoAmerican Barrier Reef System (MBRS, along the coasts of Mexico, Belize, Guatemala, and Honduras) and the southern coast of Cuba as land boundaries. The WCS is open to the Caribbean Sea in the southeast and the Yucatan Channel in …


Black Carbon In Estuarine And Coastal Ocean Dissolved Organic Matter, Antonio Mannino, H. Rodger Harvey Jan 2004

Black Carbon In Estuarine And Coastal Ocean Dissolved Organic Matter, Antonio Mannino, H. Rodger Harvey

OES Faculty Publications

We measured black carbon (BC) in ultrafiltered, high-molecular weight dissolved organic matter (UDOM) in surface waters of Delaware Bay, Chesapeake Bay, and the adjacent Atlantic Ocean (U.S.A.) to investigate the importance of riverine and estuarine dissolved organic matter (DOM) as a source of BC to the ocean. BC was 5-72% of UDOM-C (27 ± 17%), which corresponds to 8.9 ± 6.5% of dissolved organic carbon (DOC), with higher values in the heavily urbanized midbay region of the Delaware Estuary and lower yields in the river and coastal ocean. The spatial and seasonal distributions of BC along the salinity gradient of …


Age And Growth Of Scotia Sea Icefish, Chaenocephalus Aceratus, From The South Shetland Islands, M. La Mesa, J. Ashford, E. Larson, M. Vacchi Jan 2004

Age And Growth Of Scotia Sea Icefish, Chaenocephalus Aceratus, From The South Shetland Islands, M. La Mesa, J. Ashford, E. Larson, M. Vacchi

OES Faculty Publications

Samples of Chaenocephalus aceratus (Lönnberg) were collected during a trawl survey carried out around the South Shetland Islands in January–February 2002. Fish were caught by commercial bottom trawl fishing down to 500 m depth, using a stratified randomized sampling design. As observed in other recent surveys within the same area, C. aceratus represented one of the predominant species. Overall, 357 specimens ranging from 13 and 67 cm (TL) were selected for the present study. Ages were estimated by counting annuli present in the sagittal otoliths, exposed by grinding and polishing along their sagittal plane. To estimate the precision of age …


Interactive Regulation Of Dissolved Copper Toxicity By An Estuarine Microbial Community, Christina L. Dryden, Andrew S. Gordon, John R. Donat Jan 2004

Interactive Regulation Of Dissolved Copper Toxicity By An Estuarine Microbial Community, Christina L. Dryden, Andrew S. Gordon, John R. Donat

OES Faculty Publications

Cultured marine microorganisms under copper stress produce extracellular compounds having a high affinity for copper (copper-complexing ligands). These ligands are similar in binding strength to those found in natural waters, but few studies have examined the relationship between copper, copper-complexing ligand concentrations, and natural microbial populations. A series of in situ experiments in the Elizabeth River, Virginia, revealed that an intact estuarine microbial community responded to copper stress by production of extracellular, high-affinity copper-complexing ligands. The rate of ligand production was dependent on copper concentration and resulted in a reduction of the concentration of free cupric ions, Cu2+, …


Sources And Cycling Of Carbonyl Sulfide In The Sargasso Sea, Gregory A. Cutter, Lynda S. Cutter, Katherine C. Filippino Jan 2004

Sources And Cycling Of Carbonyl Sulfide In The Sargasso Sea, Gregory A. Cutter, Lynda S. Cutter, Katherine C. Filippino

OES Faculty Publications

The cycling of the radiatively important gas carbonyl sulfide (OCS) was studied in surface waters of the Sargasso Sea. In August 1999, surface OCS concentrations averaged 8.6 pmol L-1, showed minor diel variations, and varied little with depth. An OCS precursor, total dissolved organic sulfur (DOS), was lowest at the surface (40 nmol L-1) and increased with depth. The photoproduction rate of OCS from in situ incubations averaged 9.6 pmol L-1 h-1, whereas dark production was 7.0 pmol L-1 h-1. Apparent quantum yields were 10-5-10-7 from 313-436 …


Light Dependence Of Selenium Uptake By Phytoplankton And Implications For Predicting Selenium Incorporation Into Food Webs, Stephen B. Baines, Nicholas S. Fisher, Martina A. Doblin, Gregory A. Cutter, Lynda S. Cutter, Brian Cole Jan 2004

Light Dependence Of Selenium Uptake By Phytoplankton And Implications For Predicting Selenium Incorporation Into Food Webs, Stephen B. Baines, Nicholas S. Fisher, Martina A. Doblin, Gregory A. Cutter, Lynda S. Cutter, Brian Cole

OES Faculty Publications

The potentially toxic element selenium is first concentrated from solution to a large but highly variable degree by algae and bacteria before being passed on to consumers. The large loads of abiotic and detrital suspended particles often present in rivers and estuaries may obscure spatial and temporal patterns in Se concentrations at the base of the food web. We used radiotracers to estimate uptake of both selenite (Se(IV)) and C by intact plankton communities at two sites in the Sacramento/San Joaquin River Delta. Our goals were to determine (1) whether C and Se(IV) uptake were coupled, (2) the role of …


Analytical Intercomparison Between Flow Injection-Chemiluminescence And Flow Injection-Spectrophotometry For The Determination Of Picomolar Concentrations Of Iron In Seawater, Andrew R. Bowie, Peter N. Sedwick, Paul J. Worsfold Jan 2004

Analytical Intercomparison Between Flow Injection-Chemiluminescence And Flow Injection-Spectrophotometry For The Determination Of Picomolar Concentrations Of Iron In Seawater, Andrew R. Bowie, Peter N. Sedwick, Paul J. Worsfold

OES Faculty Publications

A lab- and ship-based analytical intercomparison of two flow injection methods for the determination of iron in seawater was conducted, using three different sets of seawater samples collected from the Southern Ocean and South Atlantic. In one exercise, iron was determined in three different size-fractions (< 0.03 &μm, < 0.4 μm, and unfiltered) in an effort to better characterize the operational nature of each analytical technique with respect to filter size. Measured Fe concentrations were in the range 0.19 to 1.19 nM using flow injection with luminol chemiluminescence detection (FI-CL), and 0.07 to 1.54 nM using flow injection with catalytic spectrophotometric detection with N, N-dimethyl-p-phenylenediamine dihydrochloride (FI-DPD). The arithmetic mean for the FI-CL method was higher (by 0.09 nM) than the FI-DPD method for dissolved (< 0.4 μm) Fe, a difference that is comparable to the analytical blanks, which were as high as 0.13 nM ( CL) and 0.09 nM (DPD). There was generally good agreement between the FI-CL determinations for the < 0.03 μm size fraction and the FI-DPD determinations for the < 0.4 μm size fraction in freshly collected samples. Differences in total-dissolvable ( unfiltered) Fe concentrations determined by the two FI methods were more variable, reflecting the added complexity associated with the analysis of partially digested particulate material in these samples. Overall, however, the FI-CL determinations were significantly (P = 0.05) lower than the FI-DPD determinations for the unfiltered samples. Our results suggest that the observed, systematic inter-method differences reflect measurement of different physicochemical fractions of Fe present in seawater, such that colloidal and/or organic iron species are better determined by the FI-CL method than the FI-DPD method. This idea is supported by our observation that inter-method differences were largest for freshly collected acidified seawater, which suggests extended storage (>6 months) of acidified samples as a possible protocol for the determination of dissolved iron in seawater.


Modeled And Observed Empirical Orthogonal Functions Of Currents In The Yucatan Channel, Gulf Of Mexico, Lie-Yauw Oey, Tal Ezer, Wilton Sturges Jan 2004

Modeled And Observed Empirical Orthogonal Functions Of Currents In The Yucatan Channel, Gulf Of Mexico, Lie-Yauw Oey, Tal Ezer, Wilton Sturges

CCPO Publications

Candela et al. [2003] have reported empirical orthogonal function (EOF) analyses based on 23-month current-meter and acoustic Doppler current profiler measurements in the Yucatan Channel. Those authors noted the difference between EOFs obtained from observations and their z-level models and EOFs calculated by Ezer et al. [2003] from the results of a terrain-following model. Here a new analysis is reported that explains this difference, and that also suggests the importance of shelf-edge meander mode of the core Loop Current in the channel. We show that the terrain-following model gives EOFs with characteristics similar to those observed when data from the …


Relevant Scales In Zooplankton Ecology: Distribution, Feeding, And Reproduction Of The Copepod Acartia Hudsonica In Response To Thin Layers Of The Diatom Skeletonema Costatum, Alexander B. Bochdansky, Stephen M. Bollens Jan 2004

Relevant Scales In Zooplankton Ecology: Distribution, Feeding, And Reproduction Of The Copepod Acartia Hudsonica In Response To Thin Layers Of The Diatom Skeletonema Costatum, Alexander B. Bochdansky, Stephen M. Bollens

OES Faculty Publications

We investigated the interaction of the copepod Acartia hudsonica in relation to thin layers of the diatom Skeletonema costatum. Thin layers have recently received much attention, since they are common and persistent features in the water column, often overlooked by traditional sampling methods. Their frequent abundance in coastal oceans and the high biomass associated with them has led to the assumption that they are important grazing sites of calanoid copepods. We employed 2-m tall tower tanks that allowed us to simulate thin layers. Three variables representative of three time scales were considered: the distribution of copepods in the tanks …


Estimation Of Drag Coefficient In James River Estuary Using Tidal Velocity Data From A Vessel-Towed Adcp, Chunyan Li, Arnoldo Valle-Levinson, Larry P. Atkinson, Kuo Chuin Wong, Kamazima M. M. Lwiza Jan 2004

Estimation Of Drag Coefficient In James River Estuary Using Tidal Velocity Data From A Vessel-Towed Adcp, Chunyan Li, Arnoldo Valle-Levinson, Larry P. Atkinson, Kuo Chuin Wong, Kamazima M. M. Lwiza

CCPO Publications

[1] A phase-matching method is introduced to calculate the bottom drag coefficient in tidal channels with significant lateral variation of depth. The method is based on the fact that the bottom friction in a tidal channel causes tidal velocity to have a phase difference across the channel. The calculation involves a few steps. First, the observed horizontal velocity components are analyzed to obtain the amplitude and phase of the velocity at the major tidal frequency. The phase of the longitudinal velocity is then fitted to a relationship derived from the linearized momentum balance. The drag coefficient is then calculated. This …


Advection, Krill, And Antarctic Marine Ecosystems, Eileen E. Hofmann, Eugene J. Murphy Jan 2004

Advection, Krill, And Antarctic Marine Ecosystems, Eileen E. Hofmann, Eugene J. Murphy

CCPO Publications

Advective processes are recognized as being important in structuring and maintaining marine ecosystems. In the Southern Ocean advective effects are perhaps most clearly observed because the Antarctic Circumpolar Current (ACC) provides a connection between most parts of the system, including open ocean and continental shelf regions. The ACC also provides a mechanism for large-scale transport of plankton, such as Antarctic krill (Euphousia superba Dana), which is an important component of the Southern Ocean food web. This overview provides a summary of recent observational and modelling results that consider the importance of advection to the Southern Ocean ecosystem and, in particular, …


Physical Forcing Of Phytoplankton Community Structure And Primary Production In Continental Shelf Waters Of The Western Antarctic Peninsula, Barbara B. Prézelin, Eileen E. Hofmann, Mark Moline, John M. Klinck Jan 2004

Physical Forcing Of Phytoplankton Community Structure And Primary Production In Continental Shelf Waters Of The Western Antarctic Peninsula, Barbara B. Prézelin, Eileen E. Hofmann, Mark Moline, John M. Klinck

OES Faculty Publications

Analyses of a multidisciplinary data set, collected in continental shelf waters of the Western Antarctic Peninsula (WAP) during austral summer of January 1993, identified a previously unrecognized forcing mechanism that sets up a physical and chemical structure that supports and assures site-specific diatom-dominated communities and enhanced biological production (Prézelin et al., 2000). This forcing is active when the southern boundary of the Antarctic Circumpolar Current (ACC) flows along the shelf edge, thereby facilitating onshelf bottom intrusions of nutrient-rich Upper Circumpolar Deep Water (UCDW), which then is upwelled or mixed into the upper water column. At times or locations where UCDW …


A Holocene Record Of Changing Arctic Ocean Ice Drift Analogous To The Effects Of The Arctic Oscillation, Dennis A. Darby, Jens F. Bischof Jan 2004

A Holocene Record Of Changing Arctic Ocean Ice Drift Analogous To The Effects Of The Arctic Oscillation, Dennis A. Darby, Jens F. Bischof

OES Faculty Publications

The Arctic Oscillation (AO) controls the configuration of the Transpolar Drift (TPD). If thicker ice from the Beaufort Gyre were exported, the volume of fresh water/sea ice in the Nordic seas would significantly increase, decreasing the formation of North Atlantic deep water. This would cool large parts of the Northern Hemisphere and affect global climate. Therefore, in order to understand how the global climate system functions, it is imperative to know how the TPD changed over the last millennium or more. The provenance of grains in a sediment core located near the confluence of the TPD and the Beaufort Gyre …


Influence Of Short-Term Variations In Food On Survival Of Crassotrea Gigas Larvae: A Modeling Study, Eric N. Powell, Eleanor A, Bochenek, John M. Klinck, Eileen E. Hofmann Jan 2004

Influence Of Short-Term Variations In Food On Survival Of Crassotrea Gigas Larvae: A Modeling Study, Eric N. Powell, Eleanor A, Bochenek, John M. Klinck, Eileen E. Hofmann

OES Faculty Publications

A biochemically-based model was developed to simulate the growth, development, and metamorphosis of larvae of the Pacific oyster, Crassostrea gigas. The model defines larvae in terms of their protein, lipid, carbohydrate, and ash content and includes variation in growth efficiency and egg quality to better simulate cohort population dynamics. Changes in tissue composition occur as the larva grows and in response to the biochemical composition of the food. The premise behind this modeling study was that certain periods of larval life are more critical than others with respect to the availability of food and that food quality is as …


Dinitrogen Fixation And Release Of Ammonium And Dissolved Organic Nitrogen By Trichodesmium Ims101, Margaret R. Mulholland, Deborah A. Bronk, Douglas G. Capone Jan 2004

Dinitrogen Fixation And Release Of Ammonium And Dissolved Organic Nitrogen By Trichodesmium Ims101, Margaret R. Mulholland, Deborah A. Bronk, Douglas G. Capone

OES Faculty Publications

Two methods used to measure dinitrogen (N2) fixation (acetylene reduction and 15N2 uptake) often result in different N2 fixation rates. Part of the discrepancy may arise from the observation that Trichodesmium can release a fraction of their recently fixed N2 as dissolved organic nitrogen (DON) and/or ammonium (NH4 +). To resolve outstanding issues regarding N2 fixation and the production of dissolved combined nitrogen (N) by Trichodesmium, we conducted a comprehensive analysis of N2 fixation and the production of DON and NH4+ in cultures of Trichodesmium IMS101. We performed …