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Physical Sciences and Mathematics Commons™
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Full-Text Articles in Physical Sciences and Mathematics
The Effect Of Initial Conditions On The Weather Research And Forecasting Model, Aaron D. Baker
The Effect Of Initial Conditions On The Weather Research And Forecasting Model, Aaron D. Baker
Electronic Theses and Dissertations
Modeling our atmosphere and determining forecasts using numerical methods has been a challenge since the early 20th Century. Most models use a complex dynamical system of equations that prove difficult to solve by hand as they are chaotic by nature. When computer systems became more widely adopted and available, approximating the solution of these equations, numerically, became easier as computational power increased. This advancement in computing has caused numerous weather models to be created and implemented across the world. However a challenge of approximating these solutions accurately still exists as each model have varying set of equations and variables to …
Ensemble Protein Inference Evaluation, Kyle Lee Lucke
Ensemble Protein Inference Evaluation, Kyle Lee Lucke
Graduate Student Theses, Dissertations, & Professional Papers
The Protein inference problem is becoming an increasingly important tool that aids in the characterization of complex proteomes and analysis of complex protein samples. In bottom-up shotgun proteomics experiments the metrics for evaluation (like AUC and calibration error) are based on an often imperfect target-decoy database. These metrics make the inherent assumption that all of the proteins in the target set are present in the sample being analyzed. In general, this is not the case, they are typically a mix of present and absent proteins. To objectively evaluate inference methods, protein standard datasets are used. These datasets are special in …
Statistical Modeling Of Hpc Performance Variability And Communication, Jered B. Dominguez-Trujillo
Statistical Modeling Of Hpc Performance Variability And Communication, Jered B. Dominguez-Trujillo
Computer Science ETDs
Understanding the performance of parallel and distributed programs remains a focal point in determining how compute systems can be optimized to achieve exascale performance. Lightweight, statistical models allow developers to both characterize and predict performance trade-offs, especially as HPC systems become more heterogeneous with many-core CPUs and GPUs. This thesis presents a lightweight, statistical modeling approach of performance variation which leverages extreme value theory by focusing on the maximum length of distributed workload intervals. This approach was implemented in MPI and evaluated on several HPC systems and workloads. I then present a performance model of partitioned communication which also uses …