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Mathematics

Selected Works

2016

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Articles 1 - 30 of 56

Full-Text Articles in Physical Sciences and Mathematics

Realising Step Functions As Harmonic Measure Distributions Of Planar Domains, Marie Snipes, Lesley A. Ward Dec 2016

Realising Step Functions As Harmonic Measure Distributions Of Planar Domains, Marie Snipes, Lesley A. Ward

Marie A. Snipes

No abstract provided.


Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi Dec 2016

Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi

John David N. Dionisio

GRNsight is a web application and service for visualizing models of gene regulatory networks (GRNs). A gene regulatory network (GRN) consists of genes, transcription factors, and the regulatory connections between them which govern the level of expression of mRNA and protein from genes. The original motivation came from our efforts to perform parameter estimation and forward simulation of the dynamics of a differential equations model of a small GRN with 21 nodes and 31 edges. We wanted a quick and easy way to visualize the weight parameters from the model which represent the direction and magnitude of the influence of …


Hom Quandles, Alissa S. Crans, Sam Nelson Dec 2016

Hom Quandles, Alissa S. Crans, Sam Nelson

Alissa Crans

If A is an abelian quandle and Q is a quandle, the hom set Hom(Q,A) of quandle homomorphisms from Q to A has a natural quandle structure. We exploit this fact to enhance the quandle counting invariant, providing an example of links with the same counting invariant values but distinguished by the hom quandle structure. We generalize the result to the case of biquandles, collect observations and results about abelian quandles and the hom quandle, and show that the category of abelian quandles is symmetric monoidal closed.


Solving The Ko Labyrinth, Alissa S. Crans Dec 2016

Solving The Ko Labyrinth, Alissa S. Crans

Alissa Crans

No abstract provided.


Higher Dimensional Algebra Vi: Lie 2-Algebra, John C. Baez, Alissa S. Crans Dec 2016

Higher Dimensional Algebra Vi: Lie 2-Algebra, John C. Baez, Alissa S. Crans

Alissa Crans

The theory of Lie algebras can be categorified starting from a new notion of `2-vector space', which we define as an internal category in Vect. There is a 2-category 2Vect having these 2-vector spaces as objects, `linear functors' as morphisms and `linear natural transformations' as 2-morphisms. We define a `semistrict Lie 2-algebra' to be a 2-vector space L equipped with a skew-symmetric bilinear functor [ . , . ] : L x L -> L satisfying the Jacobi identity up to a completely antisymmetric trilinear natural transformation called the `Jacobiator', which in turn must satisfy a certain law of its …


Musical Actions Of Dihedral Groups, Alissa S. Crans, Thomas M. Fiore, Ramon Satyendra Dec 2016

Musical Actions Of Dihedral Groups, Alissa S. Crans, Thomas M. Fiore, Ramon Satyendra

Alissa Crans

The sequence of pitches which form a musical melody can be transposed or inverted. Since the 1970s, music theorists have modeled musical transposition and inversion in terms of an action of the dihedral group of order 24. More recently music theorists have found an intriguing second way that the dihedral group of order 24 acts on the set of major and minor chords. We illustrate both geometrically and algebraically how these two actions are {\it dual}. Both actions and their duality have been used to analyze works of music as diverse as Hindemith and the Beatles.


From Loop Groups To 2-Groups, John C. Baez, Danny Stevenson, Alissa S. Crans, Urs Schreiber Dec 2016

From Loop Groups To 2-Groups, John C. Baez, Danny Stevenson, Alissa S. Crans, Urs Schreiber

Alissa Crans

We describe an interesting relation between Lie 2-algebras, the Kac-Moody central extensions of loop groups, and the group String(n). A Lie 2-algebra is a categorified version of a Lie algebra where the Jacobi identity holds up to a natural isomorphism called the "Jacobiator". Similarly, a Lie 2-group is a categorified version of a Lie group. If G is a simply-connected compact simple Lie group, there is a 1-parameter family of Lie 2-algebras g_k each having Lie(G) as its Lie algebra of objects, but with a Jacobiator built from the canonical 3-form on G. There appears to be no Lie 2-group …


The Forbidden Number Of A Knot, Alissa S. Crans, Blake Mellor, Sandy Ganzell Dec 2016

The Forbidden Number Of A Knot, Alissa S. Crans, Blake Mellor, Sandy Ganzell

Alissa Crans

Every classical or virtual knot is equivalent to the unknot via a sequence of extended Reidemeister moves and the so-called forbidden moves. The minimum number of forbidden moves necessary to unknot a given knot is an invariant we call the forbid- den number. We relate the forbidden number to several known invariants, and calculate bounds for some classes of virtual knots.


Torsion In One-Term Distributive Homology, Alissa S. Crans, Józef H. Przytycki, Krzysztof K. Putyra Dec 2016

Torsion In One-Term Distributive Homology, Alissa S. Crans, Józef H. Przytycki, Krzysztof K. Putyra

Alissa Crans

The one-term distributive homology was introduced by J.H.Przytycki as an atomic replacement of rack and quandle homology, which was first introduced and developed by R.Fenn, C.Rourke and B.Sanderson, and J.S.Carter, S.Kamada and M.Saito. This homology was initially suspected to be torsion-free, but we show in this paper that the one-term homology of a finite spindle can have torsion. We carefully analyze spindles of block decomposition of type (n,1) and introduce various techniques to compute their homology precisely. In addition, we show that any finite group can appear as the torsion subgroup of the first homology of some finite spindle. Finally, …


Polynomial Knot And Link Invariants From The Virtual Biquandle, Alissa S. Crans, Allison Henrich, Sam Nelson Dec 2016

Polynomial Knot And Link Invariants From The Virtual Biquandle, Alissa S. Crans, Allison Henrich, Sam Nelson

Alissa Crans

The Alexander biquandle of a virtual knot or link is a module over a 2-variable Laurent polynomial ring which is an invariant of virtual knots and links. The elementary ideals of this module are then invariants of virtual isotopy which determine both the generalized Alexander polynomial (also known as the Sawollek polynomial) for virtual knots and the classical Alexander polynomial for classical knots. For a fixed monomial ordering <, the Gr\"obner bases for these ideals are computable, comparable invariants which fully determine the elementary ideals and which generalize and unify the classical and generalized Alexander polynomials. We provide examples to …


Exotic Statistics For Strings In 4d Bf Theory, John C. Baez, Derek K. Wise, Alissa S. Crans Dec 2016

Exotic Statistics For Strings In 4d Bf Theory, John C. Baez, Derek K. Wise, Alissa S. Crans

Alissa Crans

After a review of exotic statistics for point particles in 3d BF theory, and especially 3d quantum gravity, we show that string-like defects in 4d BF theory obey exotic statistics governed by the 'loop braid group'. This group has a set of generators that switch two strings just as one would normally switch point particles, but also a set of generators that switch two strings by passing one through the other. The first set generates a copy of the symmetric group, while the second generates a copy of the braid group. Thanks to recent work of Xiao-Song Lin, we can …


Cohomology Of The Adjoint Of Hopf Algebras, J. Scott Carter, Alissa S. Crans, Mohamed Elhamdadi, Masahico Saito Dec 2016

Cohomology Of The Adjoint Of Hopf Algebras, J. Scott Carter, Alissa S. Crans, Mohamed Elhamdadi, Masahico Saito

Alissa Crans

A cohomology theory of the adjoint of Hopf algebras, via deformations, is presented by means of diagrammatic techniques. Explicit calculations are provided in the cases of group algebras, function algebras on groups, and the bosonization of the super line. As applications, solutions to the YBE are given and quandle cocycles are constructed from groupoid cocycles.


Crossed Modules Of Racks, Alissa S. Crans, Friedrich Wagemann Dec 2016

Crossed Modules Of Racks, Alissa S. Crans, Friedrich Wagemann

Alissa Crans

We generalize the notion of a crossed module of groups to that of a crossed module of racks. We investigate the relation to categorified racks, namely strict 2-racks, and trunk-like objects in the category of racks, generalizing the relation between crossed modules of groups and strict 2-groups. Then we explore topological applications. We show that by applying the rack-space functor, a crossed module of racks gives rise to a covering. Our main result shows how the fundamental racks associated to links upstairs and downstairs in a covering fit together to form a crossed module of racks.


Cohomology Of Categorical Self-Distributivity, J. Scott Carter, Alissa S. Crans, Mohamed Elhamdadi, Masahico Saito Dec 2016

Cohomology Of Categorical Self-Distributivity, J. Scott Carter, Alissa S. Crans, Mohamed Elhamdadi, Masahico Saito

Alissa Crans

We define self-distributive structures in the categories of coalgebras and cocommutative coalgebras. We obtain examples from vector spaces whose bases are the elements of finite quandles, the direct sum of a Lie algebra with its ground field, and Hopf algebras. The self-distributive operations of these structures provide solutions of the Yang–Baxter equation, and, conversely, solutions of the Yang–Baxter equation can be used to construct self-distributive operations in certain categories. Moreover, we present a cohomology theory that encompasses both Lie algebra and quandle cohomologies, is analogous to Hochschild cohomology, and can be used to study deformations of these self-distributive structures. All …


Cohomology Of Frobenius Algebras And The Yang-Baxter Equation, J. Scott Carter, Alissa S. Crans, Mohamed Elhamdadi, Enver Karadayi, Masahico Saito Dec 2016

Cohomology Of Frobenius Algebras And The Yang-Baxter Equation, J. Scott Carter, Alissa S. Crans, Mohamed Elhamdadi, Enver Karadayi, Masahico Saito

Alissa Crans

A cohomology theory for multiplications and comultiplications of Frobenius algebras is developed in low dimensions in analogy with Hochschild cohomology of bialgebras based on deformation theory. Concrete computations are provided for key examples. Skein theoretic constructions give rise to solutions to the Yang-Baxter equation using multiplications and comultiplications of Frobenius algebras, and 2-cocycles are used to obtain deformations of R-matrices thus obtained.


Enhancements Of Rack Counting Invariants Via Dynamical Cocycles, Alissa S. Crans, Sam Nelson, Aparna Sarkar Dec 2016

Enhancements Of Rack Counting Invariants Via Dynamical Cocycles, Alissa S. Crans, Sam Nelson, Aparna Sarkar

Alissa Crans

We introduce the notion of N-reduced dynamical cocycles and use these objects to define enhancements of the rack counting invariant for classical and virtual knots and links. We provide examples to show that the new invariants are not determined by the rack counting invariant, the Jones polynomial or the generalized Alexander polynomial.


Foundations Of Wave Phenomena, Charles G. Torre Dec 2016

Foundations Of Wave Phenomena, Charles G. Torre

Charles G. Torre

This is an undergraduate text on the mathematical foundations of wave phenomena. Version 8.2.


Recommended Practice For Use Of Electrostatic Analyzers In Electric Propulsion Testing Read More: Http://Arc.Aiaa.Org/Doi/Abs/10.2514/1.B35413, Shawn C. Farnell Nov 2016

Recommended Practice For Use Of Electrostatic Analyzers In Electric Propulsion Testing Read More: Http://Arc.Aiaa.Org/Doi/Abs/10.2514/1.B35413, Shawn C. Farnell

Shawn C Farnell

Electrostatic analyzers are used in electric propulsion to measure the energy per unit charge E/q" role="presentation" style="display: inline; line-height: normal; font-size: 16px; word-wrap: normal; white-space: nowrap; float: none; direction: ltr; max-width: none; max-height: none; min-width: 0px; min-height: 0px; border: 0px; padding: 0px 2px 0px 0px; margin: 0px; font-family: "Lucida Grande", "Lucida Sans", Arial, Helvetica, sans-serif; background-color: rgb(37, 79, 98); position: relative;">E/qE/q distribution of ion and electron beams: in the downstream region of thrusters, for example. This paper serves to give an overview of the most fundamental, yet most widely used, types of electrostatic analyzer designs. Analyzers are grouped into …


Using Survival Analysis To Identify Risk Factors For Treatment Interruption Among New And Retreatment Tuberculosis Patients In Kenya, Enos O. Masini, Omar Mansour, Clare E. Speer, Vittorio Addona, Christy L. Hanson, Joseph K. Sitienei, Hillary K. Kipruto, Martin Muhingo Githiomi, Brenda Nyambura Mungai Oct 2016

Using Survival Analysis To Identify Risk Factors For Treatment Interruption Among New And Retreatment Tuberculosis Patients In Kenya, Enos O. Masini, Omar Mansour, Clare E. Speer, Vittorio Addona, Christy L. Hanson, Joseph K. Sitienei, Hillary K. Kipruto, Martin Muhingo Githiomi, Brenda Nyambura Mungai

Vittorio Addona

" Despite high tuberculosis (TB) treatment success rate, treatment adherence is one of the major obstacles to tuberculosis control in Kenya. Our objective was to identify patient-related factors that were associated with time to TB treatment interruption and the geographic distribution of the risk of treatment interruption by county. Data of new and retreatment patients registered in TIBU, a Kenyan national case-based electronic data recording system, between 2013 and 2014 was obtained. Kaplan-Meier curves and log rank tests were used to assess the adherence patterns. Mixed-effects Cox proportional hazards modeling was used for multivariate analysis. Records from 90,170 patients were …


Power-Series.Pdf, Iosif Pinelis Oct 2016

Power-Series.Pdf, Iosif Pinelis

Iosif Pinelis

This a comment made on Terence Tao's blog at https://terrytao.wordpress.com/2016/10/18/a-problem-involving-power-series/


Longitudinal Success Of Calculus I Reform, Doug Bullock, Kathrine E. Johnson, Janet Callahan Oct 2016

Longitudinal Success Of Calculus I Reform, Doug Bullock, Kathrine E. Johnson, Janet Callahan

Janet M. Callahan

This paper describes the second year of an ongoing project to transform calculus instruction at Boise State University. Over the past several years, Calculus I has undergone a complete overhaul that has involved a movement from a collection of independent, uncoordinated, personalized, lecture-based sections, into a single coherent multi-section course with an activelearning pedagogical approach. The overhaul also significantly impacted the course content and learning objectives. The project is now in its fifth semester and has reached a steady state where the reformed practices are normative within the subset of instructors who might be called upon to teach Calculus I. …


Vortex–Soliton Complexes In Coupled Nonlinear Schrödinger Equations With Unequal Dispersion Coefficients, E. G. Charalampidis, Panayotis G. Kevrekidis, D. J. Frantzeskakis, B. A. Malomed Sep 2016

Vortex–Soliton Complexes In Coupled Nonlinear Schrödinger Equations With Unequal Dispersion Coefficients, E. G. Charalampidis, Panayotis G. Kevrekidis, D. J. Frantzeskakis, B. A. Malomed

Efstathios Charalampidis

We consider a two-component, two-dimensional nonlinear Schr¨odinger system with unequal dispersion coefficients and self-defocusing nonlinearities. In this setting, a natural waveform with a nonvanishing background in one component is a vortex, which induces an effective potential well in the second component. We show that the potential well may support not only the fundamental bound state, which forms a vortex–bright (VB) soliton, but also multi-ring excited radial state complexes for suitable ranges of values of the dispersion coefficient of the second component. We systematically explore the existence, stability, and nonlinear dynamics of these states. The complexes involving the excited radial states …


Lattice Three-Dimensional Skyrmions Revisited, E G. Charalampidis, T A. Ioannidou, Panayotis G. Kevrekidis Sep 2016

Lattice Three-Dimensional Skyrmions Revisited, E G. Charalampidis, T A. Ioannidou, Panayotis G. Kevrekidis

Efstathios Charalampidis

In the continuum a skyrmion is a topological nontrivial map between Riemannian manifolds, and a stationary point of a particular energy functional. This paper describes lattice analogues of the aforementioned skyrmions, namely a natural way of using the topological properties of the three dimensional continuum Skyrme model to achieve topological stability on the lattice. In particular, using fixed point iterations, numerically exact lattice skyrmions are constructed; and their stability under small perturbations is explored by means of linear stability analysis. While stable branches of such solutions are identified, it is also shown that they possess a particularly delicate bifurcation structure, …


Exciting And Harvesting Vibrational States In Harmonically Driven Granular Chains, C. Chong, E. Kim, E. G. Charalampidis, H. Kim, F. Li, Panayotis G. Kevrekidis, J. Lydon, C. Daraio, J. Yang Sep 2016

Exciting And Harvesting Vibrational States In Harmonically Driven Granular Chains, C. Chong, E. Kim, E. G. Charalampidis, H. Kim, F. Li, Panayotis G. Kevrekidis, J. Lydon, C. Daraio, J. Yang

Efstathios Charalampidis

This article explores the excitation of different vibrational states in a spatially extended dynamical system through theory and experiment. As a prototypical example, we consider a one-dimensional packing of spherical particles (a so-called granular chain) that is subject to harmonic boundary excitation. The combination of the multi-modal nature of the system and the strong coupling between the particles due to the nonlinear Hertzian contact force leads to broad regions in frequency where different vibrational states are possible. In certain parametric regions, we demonstrate that the Nonlinear Schrodinger (NLS) equation predicts the corresponding ¨ modes fairly well. We propose that nonlinear …


Rogers-Ramanujan Computer Searches, James Mclaughlin, Andrew Sills, Peter Zimmer Sep 2016

Rogers-Ramanujan Computer Searches, James Mclaughlin, Andrew Sills, Peter Zimmer

James McLaughlin

We describe three computer searches (in PARI/GP, Maple, and Mathematica, respectively) which led to the discovery of a number of identities of Rogers–Ramanujan type and identities of false theta functions.


An Extremal Problem For Finite Lattices, John Goldwasser, Brendan Nagle, Andres Saez Aug 2016

An Extremal Problem For Finite Lattices, John Goldwasser, Brendan Nagle, Andres Saez

John Copeland Nagle

For a fixed M x N integer lattice L(M,N), we consider the maximum size of a subset A of L(M,N) which contains no squares of prescribed side lengths k(1),...,k(t). We denote this size by ex(L(M,N), {k(1),...,k(t)}), and when t = 1, we abbreviate this parameter to ex(L(M,N), k), where k = k(1).

Our first result gives an exact formula for ex(L( …


Gender Representation On Journal Editorial Boards In The Mathematical Sciences, Chad M. Topaz, Shilad Sen Aug 2016

Gender Representation On Journal Editorial Boards In The Mathematical Sciences, Chad M. Topaz, Shilad Sen

Shilad Sen

No abstract provided.


Gender Representation On Journal Editorial Boards In The Mathematical Sciences, Chad M. Topaz, Shilad Sen Aug 2016

Gender Representation On Journal Editorial Boards In The Mathematical Sciences, Chad M. Topaz, Shilad Sen

Chad M. Topaz

No abstract provided.


Computing The Optimal Path In Stochastic Dynamical Systems, Martha Bauver, Eric Forgoston, Lora Billings Aug 2016

Computing The Optimal Path In Stochastic Dynamical Systems, Martha Bauver, Eric Forgoston, Lora Billings

Lora Billings

In stochastic systems, one is often interested in finding the optimal path that maximizes the probability of escape from a metastable state or of switching between metastable states. Even for simple systems, it may be impossible to find an analytic form of the optimal path, and in high- dimensional systems, this is almost always the case. In this article, we formulate a constructive methodology that is used to compute the optimal path numerically. The method utilizes finite-time Lyapunov exponents, statistical selection criteria, and a Newton-based iterative minimizing scheme. The method is applied to four examples. The first example is a …


Computing The Optimal Path In Stochastic Dynamical Systems, Martha Bauver, Eric Forgoston, Lora Billings Aug 2016

Computing The Optimal Path In Stochastic Dynamical Systems, Martha Bauver, Eric Forgoston, Lora Billings

Eric Forgoston

In stochastic systems, one is often interested in finding the optimal path that maximizes the probability of escape from a metastable state or of switching between metastable states. Even for simple systems, it may be impossible to find an analytic form of the optimal path, and in high- dimensional systems, this is almost always the case. In this article, we formulate a constructive methodology that is used to compute the optimal path numerically. The method utilizes finite-time Lyapunov exponents, statistical selection criteria, and a Newton-based iterative minimizing scheme. The method is applied to four examples. The first example is a …