Physical Sciences and Mathematics Commons^™

Increased Floodplain Inundation In The Amazon Since 1980, Ayan Fleischmann, Fabrice Papa, Stephen K. Hamilton, Alice Fassoni-Andrade, Sly Wongchuig, Jhan Carlo Espinoza, Rodrigo Paiva, John Melack, Etienne Fluet-Chouinard, Rafael M. Almeida

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Extensive floodplains throughout the Amazon basin support important ecosystem services and influence global water and carbon cycles. A recent change in the hydroclimatic regime of the region, with increased rainfall in the northern portions of the basin, has produced record-breaking high water levels on the Amazon River mainstem. Yet, the implications for the magnitude and duration of floodplain inundation across the basin remain unknown. Here we leverage state-of-the-art hydrological models, supported by in situ and remote sensing observations, to show that the maximum annual inundation extent along the central Amazon increased by 26% since 1980. We further reveal increased flood …

Larval Dispersal Patterns And Connectivity Of Acropora On Florida’S Coral Reef And Its Implications For Restoration, Samantha King, Antoine Saint-Amand, Brian K. Walker, Emmanuel Hanert, Joana Figueiredo

Marine & Environmental Sciences Faculty Articles

Since the 1980s, populations of Acropora cervicornis and A. palmata have experienced severe declines due to disease and anthropogenic stressors; resulting in their listing as threatened, and their need for restoration. In this study, larval survival and competency data were collected and used to calibrate a very high-resolution hydrodynamic model (up to 100m) to determine the dispersal patterns of Acropora species along the Florida’s Coral Reef. The resulting connectivity matrices was incorporated into a metapopulation model to compare strategies for restoring Acropora populations. This study found that Florida’s Coral Reef was historically a well-connected system, and that spatially selective restoration …

Editorial: Deep Pelagic Ecosystem Dynamics In A Highly Impacted Water Column: The Gulf Of Mexico After Deepwater Horizon, Tracey Sutton, Kevin M. Boswell, Heather Bracken-Grissom, Jose V. Lopez, Michael Vecchione, Marsh Youngbluth

Marine & Environmental Sciences Faculty Articles

The intermediate-sized midwater fauna (fishes, shrimps, and cephalopods; “micronekton” collectively) are dominant components of the pelagic ocean, which is by far the largest ecosystem type on Earth by several metrics (volume, organismal numbers, biomass, and productivity). Deep-pelagic micronekton, those animals residing in the water column below 200 m depth during the day, are the direct link between plankton and oceanic top predators, and through the linked processes of feeding and daily vertical migration facilitate one of Earth's most important ecosystem services to humans, carbon sequestration. Despite increasing recognition of this importance, a disconnect exists between stewardship and human impact; only …

Optimizing Restoration Site Selection Along The Florida Reef Tract For The Coral Species Acropora Cervicornis And Acropora Palmata, Samantha King

HCNSO Student Theses and Dissertations

The decline of Acropora cervicornis and Acropora palmata populations and consequent listing as endangered species has prompted the need for restoration. Since financial resources are limited, optimal sites for restoration should not only be environmentally suitable for outplant survival, but also have a greater capacity to replenish surrounding reefs with larvae. However, in Florida coral larval dispersal patterns and reef connectivity remain poorly studied. Here, we measured long term larval survival and competency of A. cervicornis to calibrate a high resolution (100m) biophysical larval dispersal model of Acropora in the Florida Reef Tract (FRT). This model revealed that there is …

Genetic Population And Evolutionary Dynamics Of The Angel Sharks, Squatina Spp., Cristin Keelin Fitzpatrick

HCNSO Student Theses and Dissertations

Once so abundant as to be called the ‘common’ angelshark, Squatina squatina has been extirpated from nearly the entirety of its historical range, from the eastern North Atlantic, to the Mediterranean Sea [International Union for the Conservation of Nature (IUCN) Red List: Critically Endangered]. The angelshark now only occurs in any abundance in the waters surrounding the Canary Islands. I present the first genetic assessment of the angelshark’s population dynamics and diversity from three locations within the Canary Islands archipelago: Gran Canaria, Tenerife, and Lanzarote. Using a suite of individual mitochondrial genome regions [Control region (CR), NADH dehydrogenase subunit 2 …

Discerning Population Connectivity And Natal Origins Of Pacific Herring (Clupea Pallasi): Inferences On Population Structure From Otolith Chemistry, Wade Smith, Tony Pitcher, Margot Hessing-Lewis, Brian P.V. Hunt, Evgeny A. Pakhomov

Salish Sea Ecosystem Conference

Pacific herring, Clupea pallasi, undertake annual migrations between feeding and spawning grounds that link life stages, habitats, populations, communities, and ecosystems. However, movement patterns of these highly mobile fish are poorly understood. Declines in Pacific herring abundance and slow population recoveries in the absence of fishing pressure have elevated concerns over the status of this ecologically, economically, and culturally important species. Pacific herring spawn on substrate in nearshore habitats where eggs and larvae develop for approximately two weeks before hatching. Early development within discrete spawning grounds could facilitate the incorporation of distinctive chemical signatures within otoliths that could be used …

Prioritizing Seagrass Meadows For Biodiversity Conservation Based On Landscape Connectivity, John Cristiani, Mary O'Connor

Salish Sea Ecosystem Conference

The spatial configuration of habitat and biological dispersal traits affect how organisms move across heterogenous landscapes, connecting populations and maintaining biodiversity. Quantifying this connectivity is critical to understanding and managing marine biodiversity. Despite its importance, for most regions, we lack estimates of connectivity and consideration of how habitat loss or restoration scenarios change connectivity and thereby affect diversity. We simulated dispersal and connectivity in several habitat change scenarios for seagrass habitats in the Salish Sea of British Columbia and Washington. We used a spatially explicit biophysical model to track passive larval dispersal in oceanographic currents for select life history traits. …

The Spatial Context Of “Winning” In Mpa Network Design: Location Matters, Andrew S. Kough, Claire B. Paris, Mark J. Butler Iv

Biological Sciences Faculty Publications

(First paragraph) Chollett et al. (2017) make the case that a local network of marine protected areas (MPAs) enhances fisheries for Caribbean spiny lobster (Panulirus argus) off the coast of Honduras. However, their simulation focused on one ecoregion where self-recruitment is predicted to be among the highest in the Caribbean (Cowen, Paris, & Srinivasan, 2006). The shallow banks and scattered cays of the Honduran-Nicaraguan Rise, separating the Cayman and Colombian basins, create an obstacle to the powerful southern Caribbean jet (Richardson, 2005), fostering an ideal location for topographically steered eddies and larval retention. Local management,whether based on traditional …

Genetic Variability Within Seagrass Of The North West Of Western Australia: Report Of Theme 5 - Project 5.2 Prepared For The Dredging Science Node, Kathryn Mcmahon, Udhi Hernawan, Kor-Jent Van Dijk, Michelle Waycott, Ed Biffin, Richard Evans, Paul Lavery

Research outputs 2014 to 2021

This study was the first of its kind to examine the patterns of genetic diversity in seagrasses in the Pilbara region of WA. Three species were assessed: Halophila ovalis (6 populations), Halodule uninervis (8 populations) andThalassia hemprichii (3 populations) at a range of spatial scales, within a meadow (centimetres−metres), among meadows at a local scale (2−60 km) and among meadows at a regional scale (up to 500 km). Due to the varied distribution of species all species across the same spatial scale and range of environments could not be sampled, so a nested approach was designed, with sites …

Natural Dynamics: Understanding Natural Dynamics Of Seagrasses Of The North West Of Western Australia. Report Of Theme 5 - Project 5.3 Prepared For The Dredging Science Node, Mat Vanderklift, Douglas Bearham, Mick Haywood, Hector Lozano-Montes, Roisin Mccallum, James Mclaughlin, Kathryn Mcmahon, Nick Mortimer, Paul Lavery

Research outputs 2014 to 2021

Relatively little is known of the spatial and temporal dynamics of seagrass meadows in the northwest of Western Australia, but such knowledge is needed when designing and evaluating studies that aim to detect potential dredging-related impacts on seagrass, and when making predictions about the likelihood of, and speed of recovery from such impacts. This study was undertaken to improve our understanding of the spatial and temporal patterns in seagrass composition, abundance and reproductive phenology in the Pilbara. We also characterised key environmental parameters, especially light, that influence seagrass survival and can be altered by dredging.

Aims

To improve our understanding …

Computer Modeling The Incursion Patterns Of Marine Invasive Species, Matthew W. Johnston

HCNSO Student Theses and Dissertations

Abstract Not Available.

The Impact Of Multiple Nursery Areas On The Population Structure Of Atlantic Menhaden, Brevooria Tyrannus, Kristen A. Anstead

OES Theses and Dissertations

Understanding the population structure and patterns of connectivity in marine fishes is essential when making predictions about a species' resiliency and persistence in an increasingly changing environment. The Atlantic Menhaden Brevoortia tyrannus is a clupeid that plays a critical role in the marine food web and supports one of the largest fisheries on the US East Coast. In addition to a decrease in overall numbers and spawning stock biomass, recruitment levels have remained low since the 1990s. Menhaden use numerous estuaries along the Atlantic coast for juvenile development before recruiting to the adult population and the contribution of each of …

Synthesizing Larval Competence Dynamics And Reef-Scale Retention Reveals A High Potential For Self-Recruitment In Corals, Joana Figueiredo, Andrew H. Baird, Sean R. Connolly

Marine & Environmental Sciences Faculty Articles

Many organisms have a complex life-cycle in which dispersal occurs at the propagule stage. For marine environments, there is growing evidence that high levels of recruitment back to the natal population (self-recruitment) are common in many marine organisms. For fish, swimming behavior is frequently invoked as a key mechanism allowing high self-recruitment. For organisms with weak-swimming larvae, such as many marine invertebrates, the mechanisms behind self-recruitment are less clear. Here, we assessed whether the combination of passive retention of larvae due to re-circulation processes near reefs, and the dynamics of settlement competence, can produce the high levels of self-recruitment previously …

Open And Closed Seascapes: Where Does Habitat Patchiness Create Populations With High Fractions Of Self-Recruitment?, Malin L. Pinsky, Stephen R. Palumbi, Serge Andrefouet, Samuel J. Purkis

Marine & Environmental Sciences Faculty Articles

Which populations are replenished primarily by immigrants (open) and which by local production (closed) remains an important question for management with implications for response to exploitation, protection, and disturbance. However, we lack methods for predicting population openness. Here, we develop a model for openness and show that considering habitat isolation explains the existence of surprisingly closed populations in high-dispersal species, including many marine organisms. Relatively closed populations are expected when patch spacing is more than twice the standard deviation of a species' dispersal kernel. In addition, natural scales of habitat patchiness on coral reefs are sufficient to create both largely …

Circulation And Behavior Controls On Dispersal Of Eastern Oyster (Crassostrea Virginica) Larvae In Delaware Bay, Diego A. Narvaez, John M. Klinck, Eric N. Powell, Eileen E. Hofmann, John Wilkin, Dale B. Haidvogel

CCPO Publications

The degree of genetic connectivity among populations in a metapopulation has direct consequences for species evolution, development of disease resistance, and capacity of a metapopulation to adapt to climate change. This study used a metapopulation model that integrates population dynamics, dispersal, and genetics within an individual-based model framework to examine the mechanisms and dynamics of genetic connectivity within a metapopulation. The model was parameterized to simulate four populations of oysters (Crassostrea virginica) from Delaware Bay on the mid-Atlantic coast of the United States. Differences among the four populations include a strong spatial gradient in mortality, a spatial gradient …

Behavior Constrains The Dispersal Of Long-Lived Spiny Lobster Larvae, Mark J. Butler Iv, Claire B. Paris, Jason S. Goldstein, Hirokazu Matsuda, Robert K. Cowen

Biological Sciences Faculty Publications

Behavior such as ontogenetic vertical migration (OVM) limits the transport of marine larvae with short pelagic larval durations (PLDs), but its effect on the supposed long-distance dispersal of larvae with long PLDs is unknown. We conducted laboratory tests of ontogenetic change in larval phototaxis and examined size-specific patterns of larval distribution in the plankton to characterize OVM in the Caribbean spiny lobster Panulirus argus during its long (6 mo) PLD. We then used a coupled biophysical model to explore the consequences of OVM and hydrodynamics on larval P. argus dispersal in the Caribbean Sea. Larvae reared in the laboratory were …

Applying A Molecular Genetics Approach To Shark Conservation And Management: Assessment Of Dna Barcoding In Hammerhead Sharks And Global Population Genetic Structuring In The Gray Reef Shark, Carcharhinus Amblyrhynchos., Rebekah L. Horn

HCNSO Student Theses and Dissertations

Chapter 1

DNA barcoding based on the mitochondrial cytochrome c oxidase subunit I (COI) gene sequence is emerging as a useful tool for identifying unknown, whole or partial organisms to species level. However, the application of only a single mitochondrial marker for robust species identification has also come under some criticism due to the possibility of erroneous identifications resulting from species hybridizations and/or the potential presence of nuclear-mitochondrial psuedogenes. The addition of a complementary nuclear DNA barcode has therefore been widely recommended to overcome these potential COI gene limitations, especially in wildlife law enforcement applications where greater confidence in the …

Patterns Of Spiny Lobster (Panulirus Argus) Postlarval Recruitment In The Carribbean: A Crtr Project, Mark J. Butler Iv, Angela M. Mojica, Eloy Sosa-Cordero, Marines Millet, Paul Sanchez-Navarro, Miguel A. Maldonado, Juan Posada, Bladimir Rodriguez, Carlos M. Rivas, Adrian Oviedo, Marcio Arrone, Martha Prada, Nick Bach, Nilda Jimenez, Maria Del Carmen Garcia-Rivas, Kirah Forman, Donald C. Behringer Jr., Thomas Matthews, Claire Paris, Robert Cowen

Biological Sciences Faculty Publications

As part of the Coral Reef Targeted Research (CRTR) Program, a partnership between the Global Environment Facility and the World Bank, our research team examined the recruitment patterns of Caribbean spiny lobster (Panulirus argus) postlarvae among regions in the Caribbean, with a particular focus on Mesoamerica. Our goal was to collect comparable information on postlarval supply among regions and to provide data to test predictions of connectivity generated from a coupled biophysical oceanographic model of lobster larval dispersal. Here we present the results of the postlarval recruitment monitoring program. We monitored the catch of postlarvae on Witham-style collectors …

Spatial Variation In Otolith Chemistry Of Atlantic Croaker Larvae In The Mid-Atlantic Bight, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones

OES Faculty Publications

Larval Atlantic croaker Micropogonias undulatus (1 to 7 mm in standard length) were collected on the east coast of the United States from North Carolina to Delaware during 2000. We defined 3 water-mass boundaries for potential groups of spawning Atlantic croaker using temperature and salinity measured at each sampling station. We tested the hypothesis that distinct otolith chemistries existed among 3 groups of larval Atlantic croaker collected from these water masses using solution-based inductively coupled plasma-mass spectrometry. Multivariate analysis of variance indicated that otolith chemistry differed significantly among water masses. Using a quadratic discriminant function, we were able to correctly …