Physical Sciences and Mathematics | Open Access Articles

Expression Of Wnt-Signaling Pathway Genes And Their Associations With Mirnas In Colorectal Cancer, Martha L. Slattery, Lila E. Mullany, Lori C. Sakoda, Wade S. Samowitz, Roger K. Wolff, John R. Stevens, Jennifer S. Herrick

Mathematics and Statistics Faculty Publications

The Wnt-signaling pathway functions in regulating cell growth and thus is involved in the carcinogenic process of several cancers, including colorectal cancer. We tested the hypothesis that multiple genes in this signaling pathway are dysregulated and that miRNAs are associated with these dysregulated genes. We used data from 217 colorectal cancer (CRC) cases to evaluate differences in Wnt-signaling pathway gene expression between paired CRC and normal mucosa and identify miRNAs that are associated with these genes. Gene expression data from RNA-Seq and miRNA expression data from Agilent Human miRNA Microarray V19.0 were analyzed. We focused on genes most strongly associated …

Go to article

Phenology Largely Explains Taller Grass At Successful Nests In Greater Sage-Grouse, Joseph T. Smith, Jason D. Tack, Kevin Doherty, Brady W. Allred, Jeremy D. Maestas, Lorelle I. Berkeley, Seth J. Dettenmaier, Terry A. Messmer, David E. Naugle

Wildland Resources Faculty Publications

Much interest lies in the identification of manageable habitat variables that affect key vital rates for species of concern. For ground-nesting birds, vegetation surrounding the nest may play an important role in mediating nest success by providing concealment from predators. Height of grasses surrounding the nest is thought to be a driver of nest survival in greater sage-grouse (Centrocercus urophasianus; sage-grouse), a species that has experienced widespread population declines throughout their range. However, a growing body of the literature has found that widely used field methods can produce misleading inference on the relationship between grass height and nest success. Specifically, …

Go to article

Stability Of Equilibria In Quantitative Genetic Models Based On Modified-Gradient Systems, Benjamin J. Ridenhour, Jerry R. Ridenhour

Mathematics and Statistics Faculty Publications

Motivated by questions in biology, we investigate the stability of equilibria of the dynamical system x′ = P(t)∇f(x) which arise as critical points of f, under the assumption that P(t) is positive semi-definite. It is shown that the condition ∫^∞λ₁(P(t)) dt = ∞, where λ₁(P(t)) is the smallest eigenvalue of P(t), plays a key role in guaranteeing uniform asymptotic stability and in providing information on the basis of attraction of those equilibria.

Go to article

Ncer Assistance Agreement Annual Progress Report For Grant #83582401 - Assessment Of Stormwater Harvesting Via Manage Aquifer Recharge (Mar) To Develop New Water Supplies In The Arid West: The Salt Lake Valley Example, Ryan Dupont, Joan E. Mclean, Richard C. Peralta, Sarah E. Null, Douglas B. Jackson-Smith

Civil and Environmental Engineering Faculty Publications

The aims of the original proposed project remain the same, that is, to test the hypothesis that Managed Aquifer Recharge (MAR) for stormwater harvesting is a technically feasible, socially and environmentally acceptable, economically viable, and legally feasible option for developing new water supplies for arid Western urban ecosystems experiencing increasing population, and climate change pressures on existing water resources. The project is being carried out via three distinct but integrated components that include: 1) Monitoring of existing distributed MAR harvesting schemes involving a growing number of demonstration Green Infrastructure (GI) test sites; 2) Integrated stormwater/vadose zone/groundwater/ ecosystem services modeling; and …

Go to article

Special Issue: Intramolecular Hydrogen Bonding 2017, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Even after more than a century of study [1–6], scrutiny, and detailed examination, the H-bond continues [7–12] to evoke a level of fascination that surpasses many other phenomena. Perhaps it is the ability of the simple H atom, with but a single electron, to act as a glue that maintains contact between much more complicated species. Or it might be its geometry, which prefers to hold the bridging proton on a direct line between the two heavy atoms. Not to be ignored are the spectral features of the H-bond: the large red shift of the stretching frequency of the covalent …

Go to article

Accounting For Spatial And Temporal Variation In Macroinvertebrate Community Abundances When Measuring The Food Supply Of Stream Salmonids, Nicholas Weber, Nicolaas Bouwes, Chris Jordan

Watershed Sciences Faculty Publications

The goal of salmonid habitat monitoring programs is to measure habitat attributes linked to salmonid productivity based on protocols that have sufficient precision to detect environmental variation at relevant spatial and temporal scales. Benthic macroinvertebrate community composition often is evaluated as part of habitat monitoring and assessment protocols, despite a lack of direct relationships between benthic composition and salmonid production. Macroinvertebrate drift provides a direct measure of the food resources available to stream salmonids, but drift is rarely evaluated as part of habitat monitoring protocols. This reluctance may stem from the complex spatial and temporal variability inherent in macroinvertebrate drift …

Go to article

Accounting For Spatial And Temporal Variation In Macroinvertebrate Community Abundances When Measuring The Food Supply Of Stream Salmonids, Nicholas Weber, Nicolaas Bouwes, Chris Jordan

Watershed Sciences Faculty Publications

The goal of salmonid habitat monitoring programs is to measure habitat attributes linked to salmonid productivity based on protocols that have sufficient precision to detect environmental variation at relevant spatial and temporal scales. Benthic macroinvertebrate community composition often is evaluated as part of habitat monitoring and assessment protocols, despite a lack of direct relationships between benthic composition and salmonid production. Macroinvertebrate drift provides a direct measure of the food resources available to stream salmonids, but drift is rarely evaluated as part of habitat monitoring protocols. This reluctance may stem from the complex spatial and temporal variability inherent in macroinvertebrate drift …

Go to article

Accelerated Increase In The Arctic Tropospheric Warming Events Surpassing Stratospheric Warming Events During Winter, Shih-Yu (Simon) Wang, Yen-Heng Lin, Ming-Ying Lee, Jin-Ho Yoon, Jonathan D.D. Meyer, Philip J. Rasch

Plants, Soils, and Climate Faculty Publications

In January 2016, a robust reversal of the Arctic Oscillation (AO) took place associated with a rapid tropospheric warming in the Arctic region; this was followed by the occurrence of a classic sudden stratospheric warming in March-April. The succession of these two distinct Arctic warming events provides a stimulating opportunity to examine their characteristics in terms of similarities and differences. Historical cases of these two types of Arctic warming were identified and validated based upon tropical linkages with the Madden-Julian Oscillation and El Niño as well as those documented in previous studies. Our results indicate a recent and accelerated increase …

Go to article

Mass Action In Two-Sex Population Models: Encounters, Mating Encounters And The Associated Numerical Correction, Katherine Snyder, Brynja R. Kohler, Luis F. Gordillo

Mathematics and Statistics Faculty Publications

Ideal gas models are a paradigm used in Biology for the phenomenological modelling of encounters between individuals of different types. These models have been used to approximate encounter rates given densities, velocities and distance within which an encounter certainly occurs. When using mass action in two-sex populations, however, it is necessary to recognize the difference between encounters and mating encounters. While the former refers in general to the (possibly simultaneous) collisions between particles, the latter represents pair formation that will produce offspring. The classical formulation of the law of mass action does not account this difference. In this short paper, …

Go to article

Patterns In Greater Sage-Grouse Population Dynamics Correspond With Public Grazing Records At Broad Scales, Adrian P. Monroe, Cameron L. Aldridge, Timothy J. Assal, Kari E. Veblen, David A. Pyke, Michael L. Casazza

Wildland Resources Faculty Publications

Human land use, such as livestock grazing, can have profound yet varied effects on wildlife interacting within common ecosystems, yet our understanding of land-use effects is often generalized from short-term, local studies that may not correspond with trends at broader scales. Here we used public land records to characterize livestock grazing across Wyoming, USA, and we used Greater Sage-grouse (Centrocercus urophasianus) as a model organism to evaluate responses to livestock management. With annual counts of male Sage-grouse from 743 leks (breeding display sites) during 2004-2014, we modeled population trends in response to grazing level (represented by a relative grazing index) …

Go to article

The Optical Trapezoid Model: A Novel Approach To Remote Sensing Of Soil Moisture Applied To Sentinel-2 And Landsat-8 Observations, Morteza Sadeghi, Ebrahim Babaeian, Markus Tuller, Scott B. Jones

Plants, Soils, and Climate Faculty Publications

The “trapezoid” or “triangle” model constitutes the most popular approach to remote sensing (RS) of surface soil moisture based on coupled thermal (i.e., land surface temperature) and optical RS observations. The model, hereinafter referred to as Thermal-Optical TRAapezoid Model (TOTRAM), is based on interpretation of the pixel distribution within the land surface temperature - vegetation index (LST-VI) space. TOTRAM suffers from two inherent limitations. It is not applicable to satellites that do not provide thermal data (e.g., Sentinel-2) and it requires parameterization for each individual observation date. To overcome these restrictions we propose a novel OPtical TRApezoid Model (OPTRAM), which …

Go to article

Physical Sciences and Mathematics Commons^™

Full-Text Articles in Physical Sciences and Mathematics

Expression Of Wnt-Signaling Pathway Genes And Their Associations With Mirnas In Colorectal Cancer, Martha L. Slattery, Lila E. Mullany, Lori C. Sakoda, Wade S. Samowitz, Roger K. Wolff, John R. Stevens, Jennifer S. Herrick

Mathematics and Statistics Faculty Publications

Phenology Largely Explains Taller Grass At Successful Nests In Greater Sage-Grouse, Joseph T. Smith, Jason D. Tack, Kevin Doherty, Brady W. Allred, Jeremy D. Maestas, Lorelle I. Berkeley, Seth J. Dettenmaier, Terry A. Messmer, David E. Naugle

Wildland Resources Faculty Publications

Stability Of Equilibria In Quantitative Genetic Models Based On Modified-Gradient Systems, Benjamin J. Ridenhour, Jerry R. Ridenhour

Mathematics and Statistics Faculty Publications

Civil and Environmental Engineering Faculty Publications

Special Issue: Intramolecular Hydrogen Bonding 2017, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Accounting For Spatial And Temporal Variation In Macroinvertebrate Community Abundances When Measuring The Food Supply Of Stream Salmonids, Nicholas Weber, Nicolaas Bouwes, Chris Jordan

Watershed Sciences Faculty Publications

Accounting For Spatial And Temporal Variation In Macroinvertebrate Community Abundances When Measuring The Food Supply Of Stream Salmonids, Nicholas Weber, Nicolaas Bouwes, Chris Jordan

Watershed Sciences Faculty Publications

Accelerated Increase In The Arctic Tropospheric Warming Events Surpassing Stratospheric Warming Events During Winter, Shih-Yu (Simon) Wang, Yen-Heng Lin, Ming-Ying Lee, Jin-Ho Yoon, Jonathan D.D. Meyer, Philip J. Rasch

Plants, Soils, and Climate Faculty Publications

Mass Action In Two-Sex Population Models: Encounters, Mating Encounters And The Associated Numerical Correction, Katherine Snyder, Brynja R. Kohler, Luis F. Gordillo

Mathematics and Statistics Faculty Publications

Patterns In Greater Sage-Grouse Population Dynamics Correspond With Public Grazing Records At Broad Scales, Adrian P. Monroe, Cameron L. Aldridge, Timothy J. Assal, Kari E. Veblen, David A. Pyke, Michael L. Casazza

Wildland Resources Faculty Publications

The Optical Trapezoid Model: A Novel Approach To Remote Sensing Of Soil Moisture Applied To Sentinel-2 And Landsat-8 Observations, Morteza Sadeghi, Ebrahim Babaeian, Markus Tuller, Scott B. Jones

Plants, Soils, and Climate Faculty Publications