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Full-Text Articles in Physical Sciences and Mathematics
A Predictive Model Which Uses Descriptors Of Rna Secondary Structures Derived From Graph Theory., Alissa Ann Rockney
A Predictive Model Which Uses Descriptors Of Rna Secondary Structures Derived From Graph Theory., Alissa Ann Rockney
Electronic Theses and Dissertations
The secondary structures of ribonucleic acid (RNA) have been successfully modeled with graph-theoretic structures. Often, simple graphs are used to represent secondary RNA structures; however, in this research, a multigraph representation of RNA is used, in which vertices represent stems and edges represent the internal motifs. Any type of RNA secondary structure may be represented by a graph in this manner. We define novel graphical invariants to quantify the multigraphs and obtain characteristic descriptors of the secondary structures. These descriptors are used to train an artificial neural network (ANN) to recognize the characteristics of secondary RNA structure. Using the ANN, …
Interannual Variability In American Lobster Settlement: Correlations With Sea Surface Temperature, Wind Stress And River Discharge, Mahima Jaini
Electronic Theses and Dissertations
Recruitment to benthic marine populations is fundamentally a biophysical problem. The American Lobster Settlement Index is an annual diver-based survey of the young-of-year American lobsters (Homarus americanus) found in inshore nurseries in New England, USA and Atlantic Canada at the end of the postlarval settlement season. The considerable interannual variability in the settlement index suggests that environmental factors play an important role in regulating planktonic larval supply and transport. In this study, I focused on the longest settlement time series from three oceanographically contrasting regions: Midcoast Maine, coastal Rhode Island and the lower Bay of Fundy. Sampling in these regions …
Memory Access Patterns For Cellular Automata Using Gpgpus, James Michael Balasalle
Memory Access Patterns For Cellular Automata Using Gpgpus, James Michael Balasalle
Electronic Theses and Dissertations
Today's graphical processing units have hundreds of individual processing cores that can be used for general purpose computation of mathematical and scientific problems. Due to their hardware architecture, these devices are especially effective when solving problems that exhibit a high degree of spatial locality. Cellular automata use small, local neighborhoods to determine successive states of individual elements and therefore, provide an excellent opportunity for the application of general purpose GPU computing. However, the GPU presents a challenging environment because it lacks many of the features of traditional CPUs, such as automatic, on-chip caching of data. To fully realize the potential …