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Physical Sciences and Mathematics Commons

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Life Sciences

San Jose State University

Theses/Dissertations

2011

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Full-Text Articles in Physical Sciences and Mathematics

Rna Secondary Structure Prediction Tool, Meenakshee Mali Apr 2011

Rna Secondary Structure Prediction Tool, Meenakshee Mali

Master's Projects

Ribonucleic Acid (RNA) is one of the major macromolecules essential to all forms of life. Apart from the important role played in protein synthesis, it performs several important functions such as gene regulation, catalyst of biochemical reactions and modification of other RNAs. In some viruses, instead of DNA, RNA serves as the carrier of genetic information. RNA is an interesting subject of research in the scientific community. It has lead to important biological discoveries. One of the major problems researchers are trying to solve is the RNA structure prediction problem. It has been found that the structure of RNA is …


Ab Initio Protein Structure Prediction Algorithms, Maciej Kicinski Apr 2011

Ab Initio Protein Structure Prediction Algorithms, Maciej Kicinski

Master's Projects

Genes that encode novel proteins are constantly being discovered and added to databases, but the speed with which their structures are being determined is not keeping up with this rate of discovery. Currently, homology and threading methods perform the best for protein structure prediction, but they are not appropriate to use for all proteins. Still, the best way to determine a protein's structure is through biological experimentation. This research looks into possible methods and relations that pertain to ab initio protein structure prediction. The study includes the use of positional and transitional probabilities of amino acids obtained from a non-redundant …