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- Keyword
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- Humans (3)
- Biocompatible Materials (2)
- Biopolymers (2)
- Silk (2)
- Actualistic taphonomy; bone; calcium carbonate; collagen; diagenesis; fossilization; iron; molecular paleontology; phosphate (1)
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- Alkaloid derivatives (1)
- Analytical Chemistry (1)
- Antimicrobial (1)
- Antioxidants (1)
- Artemisinin (1)
- Biomolecules (1)
- Biophysical Chemistry (1)
- Brain-Cousens model (1)
- Butyrylcholinesterase (1)
- Cartesian subjectivity (1)
- Cedergreen model (1)
- Cellulose (1)
- Chamaecyparis (1)
- Chemical signaling (1)
- Chromatography (1)
- Chrysopogon (1)
- Climate change; diamondback terrapin; habitat modeling; land use modeling; species conservation (1)
- Conservation; Geometridae; Lepidoptera; Tortricidae; umbrella species (1)
- Crystal structure (1)
- DNA bases (1)
- Deep Learning (1)
- Dhhc enzymes;orai1;palmitoylation;S-acylation;stim1;store-operated calcium entry (1)
- Dissection (1)
- Dissection, Thoracic Aorta (1)
- Dose-Response Relationships (1)
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Articles 1 - 26 of 26
Full-Text Articles in Physical Sciences and Mathematics
Mean Flow And Dispersion In The Western Mediterranean Sea From Drifter Observations, Helga Huntley, James Turbett, A.D. Kirwan, Jr., Pierre-Marie Poulain
Mean Flow And Dispersion In The Western Mediterranean Sea From Drifter Observations, Helga Huntley, James Turbett, A.D. Kirwan, Jr., Pierre-Marie Poulain
Faculty Scholarship for the College of Science & Mathematics
Currents in the ocean distribute water masses and everything floating in them. To understand how fast the water (and its flotsam) travels and how effectively it mixes, we need to study the flow statistics. There are two types of measurements of ocean currents: Eulerian measurements that look at how the ocean velocities change at a stationary point on the Earth; and Lagrangian measurements that follow a water mass. Dispersion and mixing is generally best captured by Lagrangian measurements. At the submesoscale (~10-1 – 10 km), the observational tool of choice are drifters, or floating buoys, tethered to a drogue that …
Novel Inhibitors To Mmpl3 Transporter Of Mycobacterium Tuberculosis By Structure-Based High-Throughput Virtual Screening And Molecular Dynamics Simulations, Hetanshi Choksi, Justin Carbone, Nicholas J. Paradis, Lucas Bennett, Candice Bui-Linh, Chun Wu
Novel Inhibitors To Mmpl3 Transporter Of Mycobacterium Tuberculosis By Structure-Based High-Throughput Virtual Screening And Molecular Dynamics Simulations, Hetanshi Choksi, Justin Carbone, Nicholas J. Paradis, Lucas Bennett, Candice Bui-Linh, Chun Wu
Faculty Scholarship for the College of Science & Mathematics
Tuberculosis (TB)-causing bacterium Mycobacterium tuberculosis (Mtb) utilizes mycolic acids for building the mycobacterial cell wall, which is critical in providing defense against external factors and resisting antibiotic action. MmpL3 is a secondary resistance nodulation division transporter that facilitates the coupled transport of mycolic acid precursor into the periplasm using the proton motive force, thus making it an attractive drug target for TB infection. In 2019, X-ray crystal structures of MmpL3 from M. smegmatis were solved with a promising inhibitor SQ109, which showed promise against drug-resistant TB in Phase II clinical trials. Still, there is a pressing need to discover more …
Harnessing The Synergy Of Fe And Co With Carbon Nanofibers For Enhanced Co, Kevin Arizapana, John Schossig, Michael Wildy, Daniel Weber, Akash Gandotra, Sumedha Jayaraman, Wanying Wei, Kai Xu, Lei Yu, Amos M Mugweru, Islam Mantawy, Cheng Zhang, Ping Lu
Harnessing The Synergy Of Fe And Co With Carbon Nanofibers For Enhanced Co, Kevin Arizapana, John Schossig, Michael Wildy, Daniel Weber, Akash Gandotra, Sumedha Jayaraman, Wanying Wei, Kai Xu, Lei Yu, Amos M Mugweru, Islam Mantawy, Cheng Zhang, Ping Lu
Faculty Scholarship for the College of Science & Mathematics
Amid growing concerns about climate change and energy sustainability, the need to create potent catalysts for the sequestration and conversion of CO2 to value-added chemicals is more critical than ever. This work describes the successful synthesis and profound potential of high-performance nanofiber catalysts, integrating earth-abundant iron (Fe) and cobalt (Co) as well as their alloy counterpart, FeCo, achieved through electrospinning and judicious thermal treatments. Systematic characterization using an array of advanced techniques, including SEM, TGA-DSC, ICP-MS, XRF, EDS, FTIR–ATR, XRD, and Raman spectroscopy, confirmed the integration and homogeneous distribution of Fe/Co elements in nanofibers and provided insights into their catalytic …
Protein And Polysaccharide-Based Optical Materials For Biomedical Applications., Gianna Riviello, Brendan Connor, Jake Mcbrearty, Gianna Rodriguez, Xiao Hu
Protein And Polysaccharide-Based Optical Materials For Biomedical Applications., Gianna Riviello, Brendan Connor, Jake Mcbrearty, Gianna Rodriguez, Xiao Hu
Faculty Scholarship for the College of Science & Mathematics
Recent advances in biomedical research, particularly in optical applications, have sparked a transformative movement towards replacing synthetic polymers with more biocompatible and sustainable alternatives. Most often made from plastics or glass, these materials ignite immune responses from the body, and their production is based on environmentally harsh oil-based processes. Biopolymers, including both polysaccharides and proteins, have emerged as a potential candidate for optical biomaterials due to their inherent biocompatibility, biodegradability, and sustainability, derived from their existence in nature and being recognized by the immune system. Current extraction and fabrication methods for these biomaterials, including thermal drawing, extrusion and printing, mold …
Single Night Surveys Of Moth Communities Can Serve As Ultra-Rapid Biodiversity Assessments, Daniel P. Duran, Matthew Timar, Blaine Rothauser
Single Night Surveys Of Moth Communities Can Serve As Ultra-Rapid Biodiversity Assessments, Daniel P. Duran, Matthew Timar, Blaine Rothauser
School of Earth & Environment Faculty Scholarship
Biodiversity conservation decisions are typically based on limited data and resources. For this reason, there is great interest in surveying taxa that may allow for a rapid assessment of the biodiversity at a site. Numerous taxa have been proposed and utilized for rapid assessments that allow for such a survey in a matter of weeks or less. Herein, we test the idea that nocturnal moths have many of the characteristics that make them ideal for such surveys, such as relative ease of identification, strong ecological association with specific plant species and habitats, high alpha diversity, extended seasonal activity, and ease …
Fluorescent Molecular Rotors As Versatile In Situ Sensors For Protein Quantitation, Kevin Daus, Sorachat Tharamak, Wanchai Pluempanupat, Peter Galie, Maria A Theodoraki, Emmanuel A Theodorakis, Mary Alpaugh
Fluorescent Molecular Rotors As Versatile In Situ Sensors For Protein Quantitation, Kevin Daus, Sorachat Tharamak, Wanchai Pluempanupat, Peter Galie, Maria A Theodoraki, Emmanuel A Theodorakis, Mary Alpaugh
Faculty Scholarship for the College of Science & Mathematics
Accurate protein quantitation is essential for many cellular mechanistic studies. Existing technology relies on extrinsic sample evaluation that requires significant volumes of sample as well as addition of assay-specific reagents and importantly, is a terminal analysis. This study exploits the unique chemical features of a fluorescent molecular rotor that fluctuates between twisted-to-untwisted states, with a subsequent intensity increase in fluorescence depending on environmental conditions (e.g., viscosity). Here we report the development of a rapid, sensitive in situ protein quantitation method using ARCAM-1, a representative fluorescent molecular rotor that can be employed in both non-terminal and terminal assays.
Dynamic Regulation Of Store-Operated Calcium Entry By Protein S-Acylation, Goutham Kodakandla
Dynamic Regulation Of Store-Operated Calcium Entry By Protein S-Acylation, Goutham Kodakandla
Theses and Dissertations
Calcium plays a pivotal role in many physiological functions in cells. Cytosolic calcium levels are finely tuned by calcium ion channels, pumps, and intracellular organelles. Store-operated calcium entry (SOCE) is when depletion of endoplasmic reticulum (ER) calcium stores activates a calcium sensor known as stromal interaction molecule 1 (STIM1). Activation of STIM1 leads to a conformational change from a compact state to an extended state. This extended state of STIM1 allows it to bind to a calcium channel in the plasma membrane (PM) known as Orai1. The binding of Orai1 and STIM1 leads to opening of Orai1 channels and calcium …
Fundamental Study Of Ionic Liquid Physicochemical Effects On Thermal Stability Of Model Biological Macromolecules, Austin Keith Clark
Fundamental Study Of Ionic Liquid Physicochemical Effects On Thermal Stability Of Model Biological Macromolecules, Austin Keith Clark
Theses and Dissertations
Ionic Liquids (ILs) are substances with a unique physical attribute compared to that of solid ionic salts. At room temperature, ILs are molten salts that have a variety of physical effects that can play a role in their impact on other molecules, as solvents or solutes. They can play the role of the solvent in a variety of applications, from biofuels to organic catalysis or as excipients in pharmaceutical formulations. These ILs have a desirable use as solvents due to their ability to be tunable substances. Changing the cation or anion of the IL causes a change in its physical …
Sctiger: A Deep-Learning Method For Inferring Gene Regulatory Networks From Case Versus Control Scrna-Seq Datasets., Madison Dautle, Shaoqiang Zhang, Yong Chen
Sctiger: A Deep-Learning Method For Inferring Gene Regulatory Networks From Case Versus Control Scrna-Seq Datasets., Madison Dautle, Shaoqiang Zhang, Yong Chen
Faculty Scholarship for the College of Science & Mathematics
Inferring gene regulatory networks (GRNs) from single-cell RNA-seq (scRNA-seq) data is an important computational question to find regulatory mechanisms involved in fundamental cellular processes. Although many computational methods have been designed to predict GRNs from scRNA-seq data, they usually have high false positive rates and none infer GRNs by directly using the paired datasets of case-versus-control experiments. Here we present a novel deep-learning-based method, named scTIGER, for GRN detection by using the co-differential relationships of gene expression profiles in paired scRNA-seq datasets. scTIGER employs cell-type-based pseudotiming, an attention-based convolutional neural network method and permutation-based significance testing for inferring GRNs among …
Modeling Biphasic, Non-Sigmoidal Dose-Response Relationships: Comparison Of Brain- Cousens And Cedergreen Models For A Biochemical Dataset, Venkat D. Abbaraju, Tamaraty L. Robinson, Brian P. Weiser
Modeling Biphasic, Non-Sigmoidal Dose-Response Relationships: Comparison Of Brain- Cousens And Cedergreen Models For A Biochemical Dataset, Venkat D. Abbaraju, Tamaraty L. Robinson, Brian P. Weiser
Rowan-Virtua School of Osteopathic Medicine Faculty Scholarship
Biphasic, non-sigmoidal dose-response relationships are frequently observed in biochemistry and pharmacology, but they are not always analyzed with appropriate statistical methods. Here, we examine curve fitting methods for “hormetic” dose-response relationships where low and high doses of an effector produce opposite responses. We provide the full dataset used for modeling, and we provide the code for analyzing the dataset in SAS using two established mathematical models of hormesis, the Brain-Cousens model and the Cedergreen model. We show how to obtain and interpret curve parameters such as the ED50 that arise from modeling, and we discuss how curve parameters might change …
Learning That Matters Is Messy: Experiments Revealing Hidden Potential In Higher Education, Ryan Derby-Talbot
Learning That Matters Is Messy: Experiments Revealing Hidden Potential In Higher Education, Ryan Derby-Talbot
Turning Toward Being: The Journal of Ontological Inquiry in Education
Why are some learning experiences so profound that they alter our worlds, whereas others don’t end up sticking at all? The author investigates this question in the context of undergraduate education, recounting several educational experiments that highlight subtle but powerful aspects of the student learning experience. By exploring a different approach to teaching a math course, an alternative framework for academic specialization instead of traditional majors, and a radical approach to designing new institutions, an encounter with the hidden, ontological dimension of learning becomes possible. Accessing the ontological experience of the learner opens up new possibilities for meaningful, deep, and …
Artemisinin And Its Derivatives Reactions: Characterization Of The Reaction Products Using Lc/Tof Ms, Kogila Vijayan
Artemisinin And Its Derivatives Reactions: Characterization Of The Reaction Products Using Lc/Tof Ms, Kogila Vijayan
Theses and Dissertations
Artemisinin (ART) is a sesquiterpene lactone and a popular malaria drug with potential anticancer properties. In this work, LC/TOF MS was used to investigate the reaction of ART with DNA bases and estradiol. ART-deoxyadenosine and ART-deoxycytidine interactions were studied in the presence of Fe (II) ions. ART-deoxyadenosine and ART-deoxycytidine reaction mixtures gave chromatographic signatures that remained unchanged at room temperature but grew after incubation at 37°C. The change in temperature from room temperature to 37°C was the main driver of adduct formation in these reactions. ART was found to react with Fe (II) ions as observed from several new chromatographic …
Actualistic Testing Of The Influence Of Groundwater Chemistry On Degradation Of Collagen I In Bone, Paul V. Ullmann, Kristyn K. Voegele, Kenneth Lacovara
Actualistic Testing Of The Influence Of Groundwater Chemistry On Degradation Of Collagen I In Bone, Paul V. Ullmann, Kristyn K. Voegele, Kenneth Lacovara
School of Earth & Environment Faculty Scholarship
Recent experiments have heightened our understanding of reactions which can stabilize biomolecules during early diagenesis, yet little remains known about how groundwater chemistry can aid or hinder molecular preservation within a bone through geologic time. To elucidate this issue, we conducted actualistic experiments of bone decay employing varied fluid compositions to simulate a suite of groundwaters. Modern domestic chicken (Gallus gallus) femora were placed in a matrix of compositionally- and texturally-mature, fluvially-deposited sand. To simulate groundwater flow, deionized water or solutions enriched in calcium carbonate, phosphate, or iron were percolated through separate trials for a period of 90 days. After …
Stabilizing G-Quadruplex Dna And Rna Structures With Ionic Liquids, Timothy Vaden
Stabilizing G-Quadruplex Dna And Rna Structures With Ionic Liquids, Timothy Vaden
Faculty Scholarship for the College of Science & Mathematics
Stabilizing DNA and RNA for long-term room-temperature storage is important for many biotechnological applications including oncology pharmaceuticals and mRNA-based vaccines (e.g. Covid vaccines). This poster shows that ionic liquids can improve the thermal stability of G-quadruplex DNA and RNA structures, and motivates further studies of ionic liquid-based materials for DNA / RNA stabilization.
Ultrasound-Assisted Air-Jet Spinning Of Silk Fibroin-Soy Protein Nanofiber Composite Biomaterials., Futian Yang, Fang Wang, Janine Mazahreh, Xiao Hu
Ultrasound-Assisted Air-Jet Spinning Of Silk Fibroin-Soy Protein Nanofiber Composite Biomaterials., Futian Yang, Fang Wang, Janine Mazahreh, Xiao Hu
Faculty Scholarship for the College of Science & Mathematics
Ultrasound utilizes a non-radiation technology that can meet modern standards to gain access to cheap, reliable and sustainable modern energy. Ultrasound technology can be implemented in the field of biomaterials for its exceptional potential in controlling the shape of nanomaterials. This study presents the first example of the production of soy and silk fibroin protein composite nanofibers in various ratios via combining ultrasonic technology with air-spray spinning. Characterization of ultrasonic spun nanofibers was performed by scanning electron microscopy (SEM), Fourier-transform infrared spectroscopy (FTIR), X-ray powder diffraction (XRD), differential scanning calorimetry (DSC), thermogravimetric (TG) analysis, water contact angle, water retention, enzymatic …
The Integration Of Biopolymer-Based Materials For Energy Storage Applications: A Review., Shrey Dalwadi, Arnav Goel, Constantine Kapetanakis, David Salas-De La Cruz, Xiao Hu
The Integration Of Biopolymer-Based Materials For Energy Storage Applications: A Review., Shrey Dalwadi, Arnav Goel, Constantine Kapetanakis, David Salas-De La Cruz, Xiao Hu
Faculty Scholarship for the College of Science & Mathematics
Biopolymers are an emerging class of novel materials with diverse applications and properties such as superior sustainability and tunability. Here, applications of biopolymers are described in the context of energy storage devices, namely lithium-based batteries, zinc-based batteries, and capacitors. Current demand for energy storage technologies calls for improved energy density, preserved performance overtime, and more sustainable end-of-life behavior. Lithium-based and zinc-based batteries often face anode corrosion from processes such as dendrite formation. Capacitors typically struggle with achieving functional energy density caused by an inability to efficiently charge and discharge. Both classes of energy storage need to be packaged with sustainable …
Essential Oils Composition And Biological Activity Of Chamaecyparis Obtusa, Chrysopogon Nigritanus And Lavandula Coronopifolia Grown Wild In Sudan, Loai M H Eltayeb, Sakina Yagi, Hanan M M Mohamed, Gokhan Zengin, Mohammad Ali Shariati, Maksim Rebezov, Abdullah Ibrahim Uba, Jose Manuel Lorenzo
Essential Oils Composition And Biological Activity Of Chamaecyparis Obtusa, Chrysopogon Nigritanus And Lavandula Coronopifolia Grown Wild In Sudan, Loai M H Eltayeb, Sakina Yagi, Hanan M M Mohamed, Gokhan Zengin, Mohammad Ali Shariati, Maksim Rebezov, Abdullah Ibrahim Uba, Jose Manuel Lorenzo
Faculty Scholarship for the College of Science & Mathematics
Generally, there are scant data about the constituents and eventually the biological activity of essential oils (EOs) from aromatic plants that grow naturally in Sudan. The present study aimed to determine the chemical composition, and antioxidant and enzyme inhibitory activities of EO extracted from the fruit of Chamaecyparis obtusa (Siebold and Zucc.) Endl. (family Cupressaceae), root of Chrysopogon nigritanus (Benth.) Veldkampis (family Poaceae) and aerial part of Lavandula coronopifolia Poir (family Lamiaceae). The fruit of C. obtusa contained only monoterpenes, mainly hydrogenated ones, with α-pinene (69.07%) as the major component. Oxygenated sesquiterpenes comprised the highest content of the C. nigritanus …
Kif6 Trp719arg Genetic Variant Increases Risk For Thoracic Aortic Dissection, Juan J Velasco, Yupeng Li, Bulat A Ziganshin, Mohammad A Zafar, John A Rizzo, Deqiong Ma, Hui Zang, Asanish Kalyanasundaram, John A Elefteriades
Kif6 Trp719arg Genetic Variant Increases Risk For Thoracic Aortic Dissection, Juan J Velasco, Yupeng Li, Bulat A Ziganshin, Mohammad A Zafar, John A Rizzo, Deqiong Ma, Hui Zang, Asanish Kalyanasundaram, John A Elefteriades
Faculty Scholarship for the College of Science & Mathematics
Background: KIF6 (kinesin family member 6), a protein coded by the KIF6 gene, serves an important intracellular function to transport organelles along microtubules. In a pilot study, we found that a common KIF6 Trp719Arg variant increased the propensity of thoracic aortic aneurysms (TAA) to suffer dissection (AD). The present study aims for a definite investigation of the predictive ability of KIF6 719Arg vis à vis AD. Confirmatory findings would enhance natural history prediction in TAA. Methods: 1108 subjects (899 aneurysm and 209 dissection patients) had KIF6 719Arg variant status determined. Results: The 719Arg variant in the KIF6 gene correlated strongly …
Estimating Changing Marshland Habitat And Conservation Potential For Diamondback Terrapins (Malaclemys Terrapin) In New Jersey Under Climate Change, Jacqueline Ganter, Zachary Christman
Estimating Changing Marshland Habitat And Conservation Potential For Diamondback Terrapins (Malaclemys Terrapin) In New Jersey Under Climate Change, Jacqueline Ganter, Zachary Christman
School of Earth & Environment Faculty Scholarship
The diamondback terrapin (Malaclemys terrapin), a brackish water turtle species native to the eastern United States, is under “special concern” in the state of New Jersey, due to decreasing habitat from development and changing climatic conditions. Diamondback terrapins reside in saline marshes and coastal wetlands and nest in sandy substrate, primarily beaches and dunes, in June and July. New Jersey is vulnerable to sea level rise, leaving diamondback terrapin habitats and nesting areas at risk of inundation under future climate scenarios, and, as the most densely populated state, subject to continual development pressures on potentially conservable land. Changing sea levels …
Agricultural Data Management And Sharing: Best Practices And Case Study, Eli K. Moore, Adam Kriesberg, Steven Schroeder, Kerrie Geil, Inga Haugen, Carol Barford, Erica M. Johns, Dan Arthur, Megan Sheffield, Stephanie M. Ritchie, Carolyn Jackson, Cynthia Parr
Agricultural Data Management And Sharing: Best Practices And Case Study, Eli K. Moore, Adam Kriesberg, Steven Schroeder, Kerrie Geil, Inga Haugen, Carol Barford, Erica M. Johns, Dan Arthur, Megan Sheffield, Stephanie M. Ritchie, Carolyn Jackson, Cynthia Parr
School of Earth & Environment Faculty Scholarship
Agricultural data are crucial to many aspects of production, commerce, and research involved in feeding the global community. However, in most agricultural research disciplines standard best practices for data management and publication do not exist. Here we propose a set of best practices in the areas of peer review, minimal dataset development, data repositories, citizen science initiatives, and support for best data management. We illustrate some of these best practices with a case study in dairy agroecosystems research. While many common, and increasingly disparate data management and publication practices are entrenched in agricultural disciplines, opportunities are readily available for promoting …
A Mathematical Investigation On Tumor-Immune Dynamics: The Impact Of Vaccines On The Immune Response, Jonathan Quinonez, Neethi Dasu, Mahboobi Qureshi
A Mathematical Investigation On Tumor-Immune Dynamics: The Impact Of Vaccines On The Immune Response, Jonathan Quinonez, Neethi Dasu, Mahboobi Qureshi
Rowan-Virtua Research Day
Mathematical models analyzing tumor-immune interactions provide a framework by which to address specific scenarios in regard to tumor-immune dynamics. Important aspects of tumor-immune surveillance to consider is the elimination of tumor cells from a host’s cell-mediated immunity as well as the implications of vaccines derived from synthetic antigen. In present studies, our mathematical model examined the role of synthetic antigen to the strength of the immune system. The constructed model takes into account accepted knowledge of immune function as well as prior work done by de Pillis et al. All equations describing tumor-immune growth, antigen presentation, immune response, and interaction …
Development Of Novel Alkaloid Derivatives For The Treatment Of Chronic Myeloid Leukemia, Lindsay Michelle Renn
Development Of Novel Alkaloid Derivatives For The Treatment Of Chronic Myeloid Leukemia, Lindsay Michelle Renn
Theses and Dissertations
The majority of chronic myeloid leukemia (CML) patients can be treated with and respond to imatinib mesylate (Gleevec). Imatinib is known to inhibit BCR-ABLl kinase activity, and is effective for the treatment of the majority of CML patients. Multiple mutations have been found in patients resistant to imatinib treatment, including many located in the BCR-ABLl tyrosine kinase domain (e.g. E255K and T315I). Matrine is a bioactive alkaloid from Sophora flavescens and has been shown to inhibit several types of cancers and is used in Chinese medicine. The goal of this study is to develop new matrine derivatives that inhibit growth …
Cytotoxic And Antimicrobial Effects Of Silver-Containing Surfaces, Sarah Goderecci
Cytotoxic And Antimicrobial Effects Of Silver-Containing Surfaces, Sarah Goderecci
Theses and Dissertations
This study examines applications of sputtered silver coatings as alternatives to traditional antibiotic treatments. Given the increase in reports of antibiotic-resistant bacteria, new treatments and coatings for in-dwelling medical devices such as catheters and orthopedic implants are necessary. Silver oxide films were deposited onto Ti surfaces to examine the efficacy of such coatings against a variety of bacterial species both in vitro and in vivo. Bacterial growth studies showed that coatings exhibited antimicrobial activity against a range of bacterial species acting either in a bacteriostatic or bactericidal mechanism, depending on the target. Limited toxicity to in vitro mammalian cells was …
Synthesis And Biological Activity Of Novel Quorum Sensing Compounds, Joseph Nicholas Capilato
Synthesis And Biological Activity Of Novel Quorum Sensing Compounds, Joseph Nicholas Capilato
Theses and Dissertations
Bacteria communicate with chemical signals in a process known as quorum sensing. This population density-dependent process involves the bacterial production, release and detection of structurally specific small molecules and enables the bacterial pathogen to regulate its virulence on a population-wide level. Using a variety of chemical and biological techniques, I have studied various quorum sensing systems in several bacteria, including Vibrio cholera and Pseudomonas aeruginosa. A key principle of this research involves the design, synthesis and testing of novel compounds for their biological activity. These molecules are typically based off of an initial lead target, which is often identified …
Spatial Variation In The Littoral Vertebrate Community Of A Reservoir Relative To Physical And Biological Gradients, Nathan Ruhl, Jessica J. Soski, Willem M. Roosenburg
Spatial Variation In The Littoral Vertebrate Community Of A Reservoir Relative To Physical And Biological Gradients, Nathan Ruhl, Jessica J. Soski, Willem M. Roosenburg
Faculty Scholarship for the College of Science & Mathematics
Reservoirs possess gradients in conditions and resources along their long (deep-shallow) axis, but the response of littoral vertebrates (fish and turtles) to these gradients is poorly understood. We have quantified the littoral vertebrate communities throughout a small reservoir in Southeastern Ohio during July and August using traps, and related community composition to environmental variables using NMDS ordination. Ordination revealed that fish and turtles were broadly separated in ordination space, and three distinctly different environmental gradients were significantly associated with the underlying observed species abundances. Observed turtle abundance was explained by measurements of bathymetry, turbidity, and benthic resources, but none of …
Applying A Reservoir Functional-Zone Paradigm To Littoral Bluegills: Differences In Length And Catch Frequency?, Nathan Ruhl, Holly Deangelis, Abigale M. Crosby, Willem M. Roosenburg
Applying A Reservoir Functional-Zone Paradigm To Littoral Bluegills: Differences In Length And Catch Frequency?, Nathan Ruhl, Holly Deangelis, Abigale M. Crosby, Willem M. Roosenburg
Faculty Scholarship for the College of Science & Mathematics
Reservoirs exhibit gradients in conditions and resources along the transition from lotic to lentic habitat that may be important to bluegill ecology. The lotic–lentic gradient can be partitioned into three functional zones: the riverine, transitional, and lacustrine zones. We measured catch frequency and length of bluegills (Lepomis macrochirus) captured along the periphery of these areas (i.e., in the littoral zone of each functional zone) for four small reservoirs in Southeastern Ohio during the summer months of three years. Catch frequency differed between zones for two reservoirs, but these differences were not observed in other years. There was no relationship between …