Physical Sciences and Mathematics Commons^™

Mass Spectrometry-Based Proteomic Analysis To Characterise Barley Breeding Lines, Mahya Bahmani

Theses: Doctorates and Masters

Barley is a key ingredient in the malting and brewing industry, and it is the fourth most important crop being cultivated worldwide. The protein content of the barley grain is one of the main components determining the quality and nutritive value of the food and beverages prepared from barley. Mass spectrometry-based proteomic analysis is a valuable tool that can guide and inform plant breeding strategies and crop improvement programs. Understanding the proteome changes in barley grain under different growing locations, the impact of different environmental conditions and its relationship with malting characteristics have the potential to inform breeding programs to …

Evaluating The Relative Importance Of Stormwater For Nutrient And Metal Contamination To The Urban, Groundwater Dependent Yellagonga Wetlands, Through Wetland Budgeting, Jonas Polifka

Theses: Doctorates and Masters

Wetlands provide numerous ecosystem services and can be utilised as pollutant sinks, however excessive contamination of wetlands can induce adverse effects to wetland ecology and lead to degradation of its values. Runoff from precipitation mobilizes contaminants from impervious surfaces which are, in some case, transported directly to wetlands through stormwater drainage. Urban stormwater can be a significant source of contaminants to wetlands, although its overall importance needs to be assessed for each wetland individually. Wetland budgeting is a management tool used to evaluate the relative importance of contaminant sources to wetlands, by comparing contaminant loads. Environmental management of the Yellagonga …

Deriving Statistical Inference From The Application Of Artificial Neural Networks To Clinical Metabolomics Data, Kevin M. Mendez

Theses: Doctorates and Masters

Metabolomics data are complex with a high degree of multicollinearity. As such, multivariate linear projection methods, such as partial least squares discriminant analysis (PLS-DA) have become standard. Non-linear projections methods, typified by Artificial Neural Networks (ANNs) may be more appropriate to model potential nonlinear latent covariance; however, they are not widely used due to difficulty in deriving statistical inference, and thus biological interpretation. Herein, we illustrate the utility of ANNs for clinical metabolomics using publicly available data sets and develop an open framework for deriving and visualising statistical inference from ANNs equivalent to standard PLS-DA methods.

An Investigation Into The Spatial Distribution, Habitat Selection And Resource Usage Of The Red Fox (Vulpes Vulpes) Inhabiting Urban Reserves Within Perth, Western Australia, Michael Thomas Main

Theses: Doctorates and Masters

I attempted to track a population of urban foxes in Kings Park, but due to collar failure, only one collar was retrieved. The GPS telemetry data from this fox produced home range estimates for minimum convex polygon (MCP) and kernel density (KD) of 0.302 km² and 0.331 km², respectively. The fox was predominantly active at night, with a ten-fold increase in movement during nocturnal periods when compared to daytime movements. Roads and man-made tracks were important for facilitating movement of the fox through its home range, with almost 97% of location fixes recorded within 100m of these features. The fox …

Local Binary Pattern Based Algorithms For The Discrimination And Detection Of Crops And Weeds With Similar Morphologies, Vi Nguyen Thanh Le

Theses: Doctorates and Masters

In cultivated agricultural fields, weeds are unwanted species that compete with the crop plants for nutrients, water, sunlight and soil, thus constraining their growth. Applying new real-time weed detection and spraying technologies to agriculture would enhance current farming practices, leading to higher crop yields and lower production costs. Various weed detection methods have been developed for Site-Specific Weed Management (SSWM) aimed at maximising the crop yield through efficient control of weeds. Blanket application of herbicide chemicals is currently the most popular weed eradication practice in weed management and weed invasion. However, the excessive use of herbicides has a detrimental impact …

Projected Sea Level Rise And The Conservation Ecology Of The Micronesian Megapode (Megapodius Laperouse Senex) In Palau, Micronesia, Paul M. Radley

Theses: Doctorates and Masters

Climate change has been a subject of numerous studies. While findings suggest that most biological taxa will be affected by its manifestations, aspects of a species life history may increase its susceptibility to climate change. Given their reliance on environmental sources of heat to incubate their eggs, I examined the vulnerability to climate change of the avian family Megapodiidae. I also assessed habitat use, susceptibility to sea level rise, and the effect of introduced rats and tourist presence, as added stressors to climate change, on the Micronesian Megapode (Megapodius

laperouse senex) in Palau.

Based on available literature, I …

Chemical Composition And Toxicity Of Emissions From Burning Five Vegetation Types Of Western Australia Under Experimental Combustion Conditions, T T Trang Dong

Theses: Doctorates and Masters

This study investigated the emission factors (EFs) for inorganic gases (CO2, CO, SO2, NO and NO2), carbonyls (formaldehyde, acetaldehyde, acetone, propionaldehyde, butyraldehyde and benzaldehyde), volatile organic compounds (VOCs) and particulate matter (PM2.5 and PM10) from laboratory-based fires of vegetation from five typical vegetation types of Western Australia. Species burnt were three grasslands (Spinifex represented by Triodia basedowii, Kimberley grass represented by Sehima nervosum and Heteropogon contortus, and an invasive grass represented by Ehrharta calycina (Veldt grass)), Banksia woodland and Jarrah forest under different combustion conditions. Chemical composition (water-soluble metals and polycyclic aromatic hydrocarbons – PAHs) and in vitro toxicity …

Within-Fire Patchiness Associated With Prescribed Burning In The Northern Jarrah Forests Of Western Australia, Zigourney Nielsen

Theses: Doctorates and Masters

There is growing understanding of the importance of landscape mosaics and heterogeneity for biodiversity outcomes in Western Australia. However, there is limited information on the patchiness (spatial configuration of unburnt and burnt patches which occur at a range of spatial scales) within the perimeter of a single prescribed burn. Of particular concern is the idea that prescribed burning operations, carried out under very restricted weather and environmental conditions, can lead to structural and floristic homogenization of the area within a burn perimeter. This may be evident as reduced post-fire vegetation patchiness. Western Australian Jarrah (Eucalyptus marginata) forests are managed to …

The Value Of Animal Behaviour As A Bio-Indicator Of Restoration Quality, Floyd Holmes

Theses: Doctorates and Masters

Woodland restoration is a complex endeavour, and restoration ecology as a scientific discipline requires constant re-assessments and adjustments if it is to improve outcomes and better provide for biodiversity. The promise of effective restoration is often used to justify destructive processes that affect many of the world’s ecosystems. It is therefore imperative that those promises can be met, which comes down to restoration ecologists’ and land managers’ capacity to predict and facilitate desirable ecological changes in a timely and socio-economically responsible manner. As perspectives have changed, and knowledge has been gained over the past few decades there have been several …

Residence Time In Coastal Canopies, Maryam Abdolahpour

Theses: Doctorates and Masters

Aquatic canopies provide important ecosystem services such as improved water quality, oxygen flux, sediment stabilisation and trapping and recycling of nutrients. The ecological health of coastal canopies and the significant ecosystem services they provide depends largely on the continuous exchange of dissolved and particulate materials across the canopy boundaries. In coastal environments, where flow is typically wavedominated, vertical mixing is believed to be the dominant process controlling residence time and, therefore, exchange. However, experiments have shown that wave-driven flows over rough boundaries, such as canopies, generate strong onshore mean currents (75% of the orbital velocity far above the canopy) near …

Ecology Of Savanna Ecosystems In Indonesia, Sutomo

Theses: Doctorates and Masters

Tropical savannas in South East Asia are important yet understudied ecosystems. In fact, the description of savanna is limited in the Indonesian Archipelago, a region which, based on climate alone, would be expected to have mostly forest. In this thesis, I compared and contrasted the vegetation characteristics of four savannas in the wetter part of the Indonesian archipelago (Java – Bali – Lombok) to understand how fire and grazing influence their dynamics, and searched for evidence of savanna origins, maintenance, invasion by exotic/woody species and possible ecosystem transitions. Vegetation surveys, remote sensing techniques and statistical models were used to spatially …

Freshwater Future: The Influence Of Exposure To Extreme Summer Rainfall Events On The Resistance And Recovery Patterns Of An Estuarine Seagrass, Chanelle Webster

Theses : Honours

Restoring and maintaining the ecological resilience of seagrass ecosystems will be a major challenge of the 21st century. The decline of seagrasses worldwide is attributed to the erosion or elimination of their ecological resilience driven by human impacts, extreme climate events and climate change. Ecological resilience refers to the ability of ecosystems to resist or recover from disturbances whilst maintaining their integral structure and function. Seagrass resilience is influenced by life history, meadow form (transitory or enduring) and habitat type. The purpose of this honours project was to investigate the influence of extreme climate events and meadow form on a …

Gene Flow And Genetic Structure Of The Seagrass Thalassia Hemprichii In The Indo-Australian Archipelago, Udhi Eko Hernawan

Theses: Doctorates and Masters

How genetic variation is distributed across space (genetic structure) and what factors influence the spatial genetic structuring is one of the primary questions in population genetics. The interaction between species biology (e.g. life-history traits) and physical processes operating in the seascape over time, including palaeo-historical events (e.g. sea level fluctuations) and contemporary processes (e.g. ocean currents), have been predicted to influence the extent of gene flow and the spatial genetic structuring in marine organisms. However, the relative contribution of each factor in governing the genetic pattern remains unclear. This study examined the pattern of genetic structure and the factors influencing …

Influence Of Increased Sediment Exposure On Suspension-Feeder Assemblages In A Temperate Seagrass Meadow, Pierre Bouvais

Theses: Doctorates and Masters

The impact of increased sediment exposure on coastal marine ecosystems is one of the most important contemporary environmental issues. Sediment exposure is defined as the concentrations of sediment particles suspended in the water column and the amount of sediment depositing on the seabed. In addition to natural events, such as land erosion, rainfall, and tidal currents, anthropogenic activities such as land use, road building, logging, mining, port maintenance and dredging, contribute to the discharge of a great amount of sediment in the water column. As sessile suspension-feeder assemblages play a critical role in marine ecosystems through their active transfers of …

Predicting The Impact Of Future Climate On Ecologically Important Macroalgae, Charlie Phelps

Theses: Doctorates and Masters

Macroalgae play an important role in coastal reef systems and are often referred to as ecosystem engineers. They serve as primary producers, supporting a diverse range of organisms, and are a sink for atmospheric CO2. Water acidification and ocean warming caused by anthropogenic activities are affecting many marine flora and fauna, potentially impacting the physical and chemical performance of macroalgae and the consumption rates of associated herbivores. Many studies have focused on ocean acidification or ocean warming individually but there is an overall lack of research investigating the combined effects and the ensuing repercussions on consumer-prey relationships.

Three species of …

Mining Climate Data For Shire Level Wheat Yield Predictions In Western Australia, Yunous Vagh

Theses: Doctorates and Masters

Climate change and the reduction of available agricultural land are two of the most important factors that affect global food production especially in terms of wheat stores. An ever increasing world population places a huge demand on these resources. Consequently, there is a dire need to optimise food production.

Estimations of crop yield for the South West agricultural region of Western Australia have usually been based on statistical analyses by the Department of Agriculture and Food in Western Australia. Their estimations involve a system of crop planting recommendations and yield prediction tools based on crop variety trials. However, many crop …

The Extent Of Interaction Between The Scallop And Prawn Fleets In The Shark Bay Scallop Managed Fishery, John Dickson

Theses : Honours

The Shark Bay Managed Scallop Fishery is Western Australia's most important scallop fishery with an annual value of between $2 and $58 million. In addition to this the fishery is an important source of regional employment with approximately 160 skippers and crew employed during the 2005 season. Two separate fleets are permitted to fish for scallops in this fishery, the first consisting of dedicated scallop fishing vessels (Class A licences) and the second of prawn fishing vessels (Class B licences) that are allowed to take scallops under a catch sharing arrangement. Concerns exist over the interactions between these two fleets …

Automated Photo-Identification Of Cetaceans : An Integrated Software Solution, Daniel Griggs

Theses : Honours

This study investigates current techniques used for automated photo-identification of cetaceans (i.e. dolphins and whales). The primary focus constitutes various techniques that can be applied to identify and extract dorsal fins from digital photographs. A comprehensive analysis of these techniques demonstrates the most effective software solution. To further support this analysis, four prototypes are developed to demonstrate the effectiveness of each technique in a practical environment. The analysis bases its final conclusions on test results generated from these prototype software examples. Final conclusions provide recommendations for an effective, accurate, and practical software solution. This software solution allows dorsal fins to …

A Study Of The Effects Of Probait On Chuditch, Dasyurus Geoffroii, Within The Julimar Conservation Park With Notes On The General Ecology, Melissa York

Theses : Honours

Broad scale fox baiting programs have been underway in Western Australia since 1996 when the Western Shield fauna recovery program commenced with the aim of recovering many fauna species that are under threat of extinction. Until recently, effective fox control for fauna recovery has been achieved with dried meat baits impregnated with the poison 1080. The Department of Conservation and Land Management (CALM) has developed more readily available and cost effective sausage meat baits, termed Probait. As bait acceptability trials in the laboratory indicated a potential risk from Pro bait ingestion by chuditch (Dasyurus geoffroii), assessment of the likely risk …

Investigation Into The Use Of Bait Stations For The Control Of The European Wild Rabbit (Oryctolagus Cuniculus) In The Urban Bushland Reserve Of Bold Park, Perth, Western Australia, Malin Kordes

Theses : Honours

European rabbits in Australia have a significant impact on the environment and the economy. It is therefore necessary to implement control programs. In rural areas a number of methods including warren ripping and poisoning are frequently used. In urban areas though, rabbit control is not as easily accomplished because the use of many control methods is not appropriate. For example, the poison 1080 often cannot be used due to public health concerns and warren ripping cannot be used in conservation areas. Poisoning with pindone, an anticoagulant, is therefore one of few options available to the managers of urban reserves. However, …

Plant Surrogacy: An Evaluation Of Its Use And Application In The Effort To Conserve Ground Dwelling Invertebrates, Kerry Leigh Ironside

Theses : Honours

A study conducted in the Ridges State Forest, Yanchep was designed to investigate the relationship between plant species richness, vegetation association and ground dwelling invertebrate species richness. Four plant communities were sampled at two scales of measurement. Two treatments were located in woodland and two in heath. Within each vegetation association, plant communities that were representative of both high and low species richness were selected. Three invertebrate orders, Araneae, Coleoptera and Araneae were sorted to morphospecies level. Ordinal richness was also investigated. Two-way ANOVAs indicated that there was no relationship between plant species richness, vegetation association· or the interaction between …

The Fringing Halophytic Vegetation Of Lake Austin: A Study Of Mining Impacts And Vegetation Dynamics, Simone Vellekoop

Theses : Honours

Mining operations in arid regions of Western Australia are faced with many environmental management issues. One such issue is the disposal of mine water to the environment. Mine water is commonly discharged to nearby salt lakes under licence by the Department of Environmental Protection. Licence conditions dictate that the discharge water and the receiving environment be monitored to allow impacts on the environment to be detected. Salt lakes are associated with vegetation communities dominated by halophytic members of the Chenopodiaceae, While these plants are tolerant of salinity extremes, the germination stage of many species requires periods of lowered salinity. There …

Invasion Of Indigenous Vegetation In South-Western Australia By Leptospermum Laevigatum (Gaertn.) F. Muell. (Myrtaceae), Anya Lam

Theses : Honours

The current paradigm of biodiversity conservation requires the assessment of alien plant invaders, and their potential negative impacts on indigenous species and communities. Leptospermum laevigatum (Gaertn.) F. Muell. (Victorian tea tree/ Coast tea tree) is indigenous to eastern Australia. It has invaded ecosystems within its natural biogeographic range, within new ranges in Australia and overseas. The species is listed as a high priority weed in the Environmental Weed Strategy for Western Australia. However, the basis for its listing has been casual observation rather than focussed research. This study of L. laevigatum is unique in being the first to …

The Soil Acarine Fauna Of Selected Agroecosystems Within The York Shire, Derek Juan Swarts

Theses : Honours

The practice of broadacre, dryland farming is known to affect the physico-chemical structure of the soil but our knowledge or its impact on the biological structure is rudimentary. The soil acarine (mite) communities which inhabit these soils display a variety of responses to this agricultural practice. With the increasing focus on developing ecologically sustainable agricultural techniques, an understanding of the soil acari becomes increasingly important. This study investigated the impact of two agricultural practices (designated here us Conventional and Non-Conventional) upon the abundance and diversity of the soil acari. Conventional agricultural practice involved broad scale chemical application to weeds and …

The Birds And Habitat Of Kings Park, Bradley W. Cox

Theses : Honours

Kings Park is a large urban park in the centre of Perth with extensive areas of semi-natural bushland. The park is an important refuge for birds in the metropolitan area but is losing species through habitat disturbance. Understanding the way in which birds are related to their habitat helps to understand the effect of habitat disturbance on the bird community. The aim of this project was to generate guidelines which will aid in the management and conservation of birds in the park, through an understanding of the relationship of the birds to their habitat. The avifauna and various habitat factors …

Introduced Cyprinid (Carp) Fishes In Western Australia And Their Management Implications, K. R. Breheny

Theses : Honours

Australia has no native cyprinid species and five introduced species have established self-sustaining populations. This study examines the cyprinid species present in Western Australia and estimates their distribution. The potential for introduced cyprinids to cause environmental impacts is explained and ameliorative action recommended. The presence and distribution of cyprinid species is assessed by examination of museum records, published literature, reported collections, anecdotal evidence and sampling of wetland habitats. Two species, Carassius nuratus (Goldfish) and Cyprinus carpio (Koi carp) are believed to have established populations and a map of estimated distribution is compiled. The capacity for introduced carp to undergo sudden …

Modelling The Effects Of Rehabilitation And Changed Agricultural Practices In A Saline-Affected Rural Catchment, M. K. Heller

Theses : Honours

The Bremer river catchment, on the South-coast of Western Australia, is typical of most river catchments in this region in that it has been seriously affected by sedimentation, salinisation and eutrophication brought on by the gradual dominance of agricultural land management practices. Vegetated rehabilitation and changed agricultural land management practices (ie minimum / zero tillage) have now been widely adopted throughout the catchment in response to these degradation issues. This study examined the potential impact minimum / zero tillage, vegetated rehabilitation and remnant vegetation could have on both a farm and catchment wide scale. A Geographical Information System was developed …

Modelling And Risk Analysis Of The Western Rock Lobster (Panulirus Cygnus) Fishery Of Western Australia, C. S. Yap

Theses: Doctorates and Masters

The predictive power for short-term forecasting of selected biomass dynamic models was examined using the standardised catch and effort data from the 1944/45 to 1990/91 season of the western rock lobster. Risk analysis of the fishery based on the predicted fishing efforts with the Deriso-Schnute delay-difference model indicates a high probability of recruitment failure. Some hypothetical management strategies of reducing fishing effort were evaluated by taking into consideration the total catch and biological risk to the fishery.

Proline Concentration As An Indicator Of The Level Of Salt Tolerance, Philomena Y. Rosalie

Theses : Honours

Each year approximately 20 million hectares of land become affected by increasing salinity. Salt tolerant plants are being used to rehabilitate salt affected areas. Plants use a variety of mechanisms to adapt to salt in their environments. Glycophytes tolerate low to moderate levels of salt while halophytes can tolerate very high salt levels. Many basic physiological attributes have been suggested as important components of a salt tolerant phenotype. These include, influx and/or efflux of ions across plasma membrane and the tonoplast, modification of membrane composition and synthesis of compatible solutes such as soluble carbohydrates, glycine betaines and proline. The project …

The Near-Shore, Soft-Substrate Bivalves Of The Swan Estuary: An Assessment Of Their Use As Biological Indicators, Graham Bailey

Theses : Honours

The soft-substrate bivalves of the Swan Estuary were evaluated for their suitability as biological indicators. The major requirement of a biological indicator is that a response to changing conditions can be shown. Demonstrating that bivalve community and populations respond to changing environmental conditions within The Estuary would fulfill this criteria. To make this assessment the study conducted a quantitative sampling program which established the current structure of the near-shore soft-substrate bivalve community and this was compared with the community established in 1973-74. To evaluate the predictive potential of bivalve structure as an indicator, major environmental conditions in the Estuary were …