Physical Sciences and Mathematics Commons^™

Automated Tree Mortality Detection Using Ubiquitously Available Public Data, Michael T. Huggins

Master's Theses

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic …

The Tidal Prism, Viable Eelgrass Habitat, And The Effects Of Sea Level Rise In Morro Bay, Kaden A. Caliendo

Master's Theses

The tidal prism, or the volume of water exchanged from the sea to an estuary from mean low to mean high tide, influences system hydrodynamics and ecological functioning. Since 1884, the tidal prism in Morro Bay, California has been estimated to be decreasing over time due to sedimentation from upstream practices. What is the current tidal prism in Morro Bay and how will that change with sea level rise? How will eelgrass respond to rising sea levels?

For this study, inexpensive tidal gauges were deployed at four locations in Morro Bay from March to August 2023 to measure spatially varying …

Benthic Habitat Mapping Of Mountain Top Bank Within The Northern Gulf Of Mexico Through Integrated Geophysical And Visual Data Analysis, Bethany Pertain

Master's Theses

Mesophotic coral ecosystems (MCEs) are among the seafloor ecosystems that have been poorly studied throughout the world’s oceans, but they are a vital and diverse ecosystem that should be prioritized for future mapping and ecological studies. Priority should be given to them because they possess natural, social, and economic values, and face a variety of threats, all of which, if not better understood will result in the loss of this unique ecosystem. Insights into these ecosystems, among other deep-sea environments, are lacking due to difficulty accessing them, inherent lag between data collection by an autonomous system and observation by a …

Fire Effects In Montane Meadows, Rosie Deak

Master's Theses

The impact of forest fires on downstream meadow communities across California is of great ecological interest, as meadows are an important source of biodiversity in this region. Over a century of fire suppression has led to increased forest stand densities, which in turn has resulted in less water availability due to increased transpiration of densely growing trees. This potentially has left less available water for downstream plant communities in meadows. If true, then high mortality wildfires in surrounding forest are predicted to lead to an increase in available downstream moisture where obligate and facultative-wetland taxa increase and dry-adapted upland taxa …

Soarnet, Deep Learning Thermal Detection For Free Flight, Jake T. Tallman

Master's Theses

Thermals are regions of rising hot air formed on the ground through the warming of the surface by the sun. Thermals are commonly used by birds and glider pilots to extend flight duration, increase cross-country distance, and conserve energy. This kind of powerless flight using natural sources of lift is called soaring. Once a thermal is encountered, the pilot flies in circles to keep within the thermal, so gaining altitude before flying off to the next thermal and towards the destination. A single thermal can net a pilot thousands of feet of elevation gain, however estimating thermal locations is not …

Eelgrass (Zostera Marina) Population Decline In Morro Bay, Ca: A Meta-Analysis Of Herbicide Application In San Luis Obispo County And Morro Bay Watershed, Tyler King Sinnott

Master's Theses

The endemic eelgrass (Zostera marina) community of Morro Bay Estuary, located on the central coast of California, has experienced an estimated decline of 95% in occupied area (reduction of 344 acres to 20 acres) from 2008 to 2017 for reasons that are not yet definitively clear. One possible driver of degradation that has yet to be investigated is the role of herbicides from agricultural fields in the watershed that feeds into the estuary. Thus, the primary research goal of this project was to better understand temporal and spatial trends of herbicide use within the context of San Luis …

Sensory Stressors Impact Species Responses Across Local And Continental Scales, Ashley A. Wilson

Master's Theses

Pervasive growth in industrialization and advances in technology now exposes much of the world to anthropogenic night light and noise (ANLN), which pose a global environmental challenge in terrestrial environments. An estimated one-tenth of the planet’s land area experiences artificial light at night — and that rises to 23% if skyglow is included. Moreover, anthropogenic noise is associated with urban development and transportation networks, as the ecological impact of roads alone is estimated to affect one-fifth of the total land cover of the United States and is increasing in space and intensity. Existing research involving impacts of light or noise …

Quantifying The Environmental Performance Of A Stream Habitat Improvement Project, Cody Morse

Master's Theses

River restoration projects are being installed worldwide to rehabilitate degraded river habitat. Many of these projects focus on stream habitat improvement (SHI), and an estimated 60%of the 37,000 projects listed in the National River Restoration Science Synthesis Program focus on SHI for salmon and trout species. These projects frequently lack a sufficient monitoring program or account for the environmental costs associated with SHI. The present study used life cycle assessment (LCA) techniques and topographic effectiveness monitoring to quantify environmental costs on the basis of geomorphic change. This methodology was a novel approach to assessing the cost-benefit relationship of SHI. To …

Incorporating Multi-Spectral Imaging Into Long-Term Upland Breeding Bird Monitoring, Kyle William Schumacher

Master's Theses

Quivira National Wildlife Refuge in Kansas, United States partnered with Fort Hays State University Hays, KS in 2014 to begin a collaborative research project that aimed to develop a long-term monitoring protocol guided by the Comprehensive Conservation Plan for the refuge published in 2013. This plan identified specific wildlife taxa underrepresented in management impact assessments throughout the property. As a result of this plan, surveys were established to monitor interactions between upland breeding birds and the vegetation community. I conducted point count surveys in 2016, 2017, and 2018 for 122 observation points across four transects. I measured seventeen vegetation variables …

Planning Cities, Economically Or Communally: A Comparative Study Of Amsterdam And San Francisco, Raina Dawn Whittekiend

Master's Theses

Globalization has spun “community” off its axis. What once defined community is no longer the current state of the community. Increased economic transactions have led to the instability of communities that once depended on one another at the local level. These communities are now dependent on systems that do not know nor understand their actors. This lack of relationship between development and subject is witnessed and highly scrutinized in developing countries all over the world and has been intensely researched in academic literature. This thesis intends to better understand why in modernized global cities these same processes of development and …

Textural Analysis Of Historical Aerial Photography To Determine Change In Coastal Marsh Extent: Site Of The Present-Day Grand Bay National Estuarine Research Reserve (Gbnerr), Mississippi, 1955-2014, Heather Michelle Nicholson

Master's Theses

Coastal marshlands are among the world’s most highly productive ecosystems but they have diminished greatly in the past several decades owing to sea-level rise and direct anthropogenic influences. An effective means of quantifying loss or gain in marsh area is through the use of aerial image data, which offers synoptic views of the landscape at decadal-scale sampling frequencies. However, a potential problem with older panchromatic, or black-and-white, imagery is the absence of multispectral information that might be used otherwise in remote identification of vegetation types. Nevertheless, the analysis of horizontal variability in image brightness values, or image texture, can be …

Modern Fair-Weather And Storm Sediment Transport Around Ship Island, Mississippi: Implications For Coastal Habitats And Restoration Efforts, Eve Rettew Eisemann

Master's Theses

The Mississippi – Alabama barrier island chain is experiencing accelerated sea level rise, decreased sediment supply, and frequent hurricane impacts. These three factors drive unprecedented rates of morphology change and ecosystem reduction. All islands in the chain have experienced land loss on the order of hectares per year since records began in the 1840s. In 1969, Hurricane Camille impacted as a Category 5, breaching Ship Island, and significantly reduced viable seagrass habitat. Hurricane Katrina impacted as a Category 3 in 2005, further widening Camille Cut. To better understand the sustainability of these important islands and the ecosystems they support, sediment …

Field Emissions Of (Hydro)Chlorofluorocarbons And Methane From A California Landfill, Alexander H. Sohn

Master's Theses

A comprehensive field investigation was conducted at Potrero Hills Landfill (PHL) located in Suisun City, California to quantify emissions of twelve (hydro)chlorofluorocarbons (i.e. F-gases). The specific target constituents for this study included CFC-11, CFC-12, CFC-113, CFC-114, HCFC-21, HCFC-22, HCFC-141b, HCFC-142b, HCFC-151a, HFC-134a, HFC-152a, and HFC-245fa. The majority of the F-gas emission studies have been conducted outside of the United States and very limited field landfill emission data are available in the United States. Because of historical usage of blowing agents in insulation foams including CFC-11, HCFC-142b, HFC-134a, and HFC-245fa, models reported in literature predicted high F-gas emissions from a landfill …

The Role Of The State, Multinational Oil Companies, International Law & The International Community: Intersection Of Human Rights & Environmental Degradation Climate Change In The 21st Century Caused By Traditional Extractive Practices, The Amazon Rainforest, Indigenous People And Universal Jurisdiction To Resolve The Accountability Issue, Marcela Cabrera Luna

Master's Theses

Local, national and international conventions that protect indigenous sovereignty and their territories, where many of the resources are extracted from by multinational corporations (MNCs) particularly oil, the number one commodity of the world and cause of climate change, continue to be jeopardized because of the lack of a clear international legal framework that can protect them and potentially hold multinationals accountable for their actions. These practices are causing not only environmental issues to the indigenous and surrounding communities, but climate change is in fact, the real human rights issue of the 21^st century and it affects everyone. By using …

Habitat Selection Of Gulf-Strain Striped Bass, Morone Saxatilis: Relationships To Dynamic Abiotic Environmental Characteristics Within The Biloxi River, Mississippi, Jennifer Lynne Green

Master's Theses

The purpose of this project was to provide insights about the short- and long-term patterns of habitat selection of Gulf-strain Striped Bass, Morone saxatilis, based on spatially and seasonally variable abiotic environmental characteristics (water temperature, dissolved oxygen (DO), salinity, specific conductivity, and pH) in the Biloxi River, MS system. Juvenile hatchery-reared and feral adult Gulf-strain Striped Bass were acoustically-tagged and continuously monitored via active and passive telemetry from November 2012 – June 2014. Each month the available abiotic environmental characteristics of 40 random locations within the Biloxi River, along with sub-habitat conditions occupied by acoustically-tagged Gulf-strain Striped Bass, were …

An Analysis Of Juvenile Chinook Salmon Outmigration Speed And Survival In Response To Habitat Features: Sacramento River From Knights Landing To Sacramento, California, Natalie N. Mcnair

Master's Theses

Outmigration is an important life stage for Chinook salmon (Oncorhynchus tshawytscha) survival in the Sacramento River, and yet our understanding of their behavior and needs during this time is limited. To gain a better understanding of their survival and movement rates during outmigration, late fall run Chinook salmon smolts were tracked using acoustic telemetry techniques. Habitat features were measured and quantified throughout the study area to evaluate how Chinook salmon respond to key levee features including shade, instream woody material, and aquatic vegetation. The overall average movement speed through the entire study area was 0.77 m/s with an …

Detecting Change In Central California Coast Coho Salmon Habitat In Scotts Creek, California, From 1997–2013, Ashley Brubaker Hillard

Master's Theses

Scotts Creek, in Santa Cruz County, Calif., supports the southernmost extant population of Coho Salmon (Oncorhynchus kisutch) in North America. In 1997, the California Department of Fish and Game (now Fish and Wildlife) conducted an extensive habitat typing survey of mainstem Scotts Creek, describing all habitat units from the top of the estuary to the limit of anadromy approximately 12 km upstream. I repeated this survey in 2013 to (1) assess changes in the quantity and quality of instream habitat, (2) compare the current condition to goals and standards established in the federal Central California Coast (CCC) Coho …

Methane Production By A Packed-Bed Anaerobic Digester Fed Dairy Barn Flush Water, Sean Richard Thomson

Master's Theses

Packed-bed digesters are an alternative to covered lagoon digesters for methane production and anaerobic treatment of dilute wastewaters such as dairy barn flush water. The physical media of packed-beds retain biofilms, often allowing increased treatment rates. Previous studies have evaluated several types of media for digestion of dilute wastewaters, but cost and media fouling have setback commercial development. A major operational cost has been effluent recirculation pumping.

In the present effort, a novel approach to anaerobic digestion of flush dairy water was developed at pilot-scale: broken walnut shells were used as a low-cost packed-bed medium and effluent recirculation was replaced …

Classification Of Plot-Level Fire-Caused Tree Mortality In A Redwood Forest Using Digital Orthophotography And Lidar, Brian David Bishop

Master's Theses

Swanton Pacific Ranch is an approximately 1,300 ha working ranch and forest in northern Santa Cruz County, California, managed by California Polytechnic State University, San Luis Obispo (Cal Poly). On August 12, 2009, the Lockheed Fire burned 300 ha of forestland, 51% of the forested area on the property, with variable fire intensity and mortality. This study used existing inventory data from 47 permanent 0.08 ha (1/5 ac) plots to compare the accuracy of classifying mortality resulting from the fire using digital multispectral imagery and LiDAR. The percent mortality of trees at least 25.4 cm (10”) DBH was aggregated to …

Mortality Assessment Of Redwood And Mixed Conifer Forest Types In Santa Cruz County Following Wildfire, Steve R. Auten

Master's Theses

On August 12, 2009, the Lockheed Fire ignited the west slope of the Santa Cruz Mountains burning approximately 7,819 acres. Foresters and other land managers were left with challenging decisions on how to evaluate tree mortality. Big Creek Lumber Company, California Polytechnic State University, San Luis Obispo (Cal Poly)’s Swanton Pacific Ranch (SPR), and other resource professionals familiar with this region teamed up to develop a method for evaluating damage and thereby mortality for redwood, California nutmeg, live oak, tanoak, California bay, Pacific madrone, big leaf maple, Douglas-fir, Monterey pine, and knobcone pine. Quantitative damage criteria were used to design …

Quantification Of Nitrate Sources And Sinks Using A Water Quality Network In Morro Bay Estuary, California, Johanna Nadia Jean Weston

Master's Theses

Using an instrumented water quality network in Morro Bay Estuary, California from 2007 to 2010 (15 min sampling frequency), this study addressed the two objectives of constructing a nitrate budget and assessing the influence of sampling frequency on water quality parameters. These two objectives led to the submission of an original report of research (Appendix A) and a note (Appendix B) to peer-reviewed journals.

The first objective was to characterize the high spatial and temporal variation in physical parameters and nitrate concentrations and to construct a nitrate budget quantifying sources and sinks of nitrate from the ocean, streams, and groundwater, …

Salt Contamination Of Ground And Surface Water In Connecticut: A Compilation And Synthesis Of Historic Data And Local Scale Testing, James P. Cassanelli

Master's Theses

No abstract provided.

A Comparison Of Lidar Generated Channel Features With Ground-Surveyed Channel Features In The Little Creek Watershed, Ryan M. Hilburn

Master's Theses

Detecting change in stream channel features over time is important in understanding channel morphology and the effects of both natural and anthropogenic influences. Channel features historically, and now currently, are being measured using a variety of ground survey techniques. These surveys require substantial time commitments and funding to complete. Light Detection and Ranging (LiDAR) is an airborne laser mapping technology that holds promise to provide an alternative to ground-based survey methods. For this study, ground surveys were used to verify the accuracy of data collected using airborne LiDAR. Fifty nine cross-sectional profiles were surveyed in the Little Creek watershed at …

Remediation Of Soil Hydrophobicity On A Coastal Usga Sand-Based Golf Green, Troy David Thompson

Master's Theses

Managing soil hydrophobicity caused by localized dry spots (LDS) on sand based golf greens has become one of the greatest challenges for golf course superintendents and managers, especially as water restrictions intensify. The purpose of this study was to evaluate the effectiveness of thirteen soil surfactants in eliminating LDS and in maximizing root zone soil moisture on a sand based USGA golf green located on the California Central Coast. Potential water repellency of air dried cores (measured utilizing the water droplet penetration time (WDPT) method), phytotoxicity, and climate were analyzed during two experimental trials. Phytotoxicity data was collected for Trial …

Influence Of Clay Mineralogy On Soil Dispersion Behavior And Water Quality, Jessique L. Ghezzi

Master's Theses

Currently, there is very little research available on nonpoint source pollution from rural watersheds. Government regulatory agencies are desperate for information regarding the causes of nonpoint source pollution, which includes the relationship between suspended soil particles and dispersion. Since soil dispersion is dependent on clay mineralogy, knowing the clay mineralogy of the soil in an area can help predict sediment loads entering the surrounding surface waters. This information is necessary to protect the resource value of our rivers, lakes, and estuaries, as well as to protect recreational activities such as fishing or hunting; but most importantly, this information is necessary …