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- Research Collection School Of Computing and Information Systems (6)
- Electrical & Computer Engineering Faculty Publications (4)
- Department of Computer Science and Engineering: Dissertations, Theses, and Student Research (3)
- Computer Science and Engineering Faculty Publications (2)
- STEMPS Faculty Publications (2)
Articles 1 - 21 of 21
Full-Text Articles in Physical Sciences and Mathematics
Overcoming Uncertainties In Molecular Visualization, Thomas Wischgoll
Overcoming Uncertainties In Molecular Visualization, Thomas Wischgoll
Computer Science and Engineering Faculty Publications
Uncertainties are difficult if not impossible to avoid. Capturing data from the analog world almost always results in some form of uncertainty. The amount of uncertainty depends on the method of measurement and its accuracy. When visualizing data that has some associated uncertainty, it is essential to properly process and convey such uncertainty and especially the amount of uncertainty keeping in mind that additional processing steps can amplify the uncertainty. There are various sources of uncertainty, such as numerical limitations or limitations of the capture device. However, there are other sources of uncertainty. Some of these uncertainties stem from model …
Class Activation Mapping And Uncertainty Estimation In Multi-Organ Segmentation, Md. Shibly Sadique, Walia Farzana, Ahmed Temtam, Khan Iftekharuddin, Khan Iftekharuddin (Ed.), Weijie Chen (Ed.)
Class Activation Mapping And Uncertainty Estimation In Multi-Organ Segmentation, Md. Shibly Sadique, Walia Farzana, Ahmed Temtam, Khan Iftekharuddin, Khan Iftekharuddin (Ed.), Weijie Chen (Ed.)
Electrical & Computer Engineering Faculty Publications
Deep learning (DL)-based medical imaging and image segmentation algorithms achieve impressive performance on many benchmarks. Yet the efficacy of deep learning methods for future clinical applications may become questionable due to the lack of ability to reason with uncertainty and interpret probable areas of failures in prediction decisions. Therefore, it is desired that such a deep learning model for segmentation classification is able to reliably predict its confidence measure and map back to the original imaging cases to interpret the prediction decisions. In this work, uncertainty estimation for multiorgan segmentation task is evaluated to interpret the predictive modeling in DL …
Fault Analysis And Debugging Of Microservice Systems: Industrial Survey, Benchmark System, And Empirical Study, Xiang Zhou, Xin Peng, Tao Xie, Jun Sun, Chao Ji, Wenhai Li, Dan Ding
Fault Analysis And Debugging Of Microservice Systems: Industrial Survey, Benchmark System, And Empirical Study, Xiang Zhou, Xin Peng, Tao Xie, Jun Sun, Chao Ji, Wenhai Li, Dan Ding
Research Collection School Of Computing and Information Systems
The complexity and dynamism of microservice systems pose unique challenges to a variety of software engineering tasks such as fault analysis and debugging. In spite of the prevalence and importance of microservices in industry, there is limited research on the fault analysis and debugging of microservice systems. To fill this gap, we conduct an industrial survey to learn typical faults of microservice systems, current practice of debugging, and the challenges faced by developers in practice. We then develop a medium-size benchmark microservice system (being the largest and most complex open source microservice system within our knowledge) and replicate 22 industrial …
Exploring Eye Tracking Data On Source Code Via Dual Space Analysis, Li Zhang
Exploring Eye Tracking Data On Source Code Via Dual Space Analysis, Li Zhang
Department of Computer Science and Engineering: Dissertations, Theses, and Student Research
Eye tracking is a frequently used technique to collect data capturing users' strategies and behaviors in processing information. Understanding how programmers navigate through a large number of classes and methods to find bugs is important to educators and practitioners in software engineering. However, the eye tracking data collected on realistic codebases is massive compared to traditional eye tracking data on one static page. The same content may appear in different areas on the screen with users scrolling in an Integrated Development Environment (IDE). Hierarchically structured content and fluid method position compose the two major challenges for visualization. We present a …
Deploying, Improving And Evaluating Edge Bundling Methods For Visualizing Large Graphs, Jieting Wu
Deploying, Improving And Evaluating Edge Bundling Methods For Visualizing Large Graphs, Jieting Wu
Department of Computer Science and Engineering: Dissertations, Theses, and Student Research
A tremendous increase in the scale of graphs has been witnessed in a wide range of fields, which demands efficient and effective visualization techniques to assist users in better understandings of large graphs. Conventional node-link diagrams are often used to visualize graphs, whereas excessive edge crossings can easily incur severe visual clutter in the node-link diagram of a large graph. Edge bundling can effectively remedy visual clutter and reveal high-level graph structures. Although significant efforts have been devoted to developing edge bundling, three challenging problems remain. First, edge bundling techniques are often computationally expensive and are not easy to deploy …
Effects Of Light Reflection On Spatial Visualization Ability And Implications For Engineering Technology Students, Petros Katsioloudis, Mildred Jones
Effects Of Light Reflection On Spatial Visualization Ability And Implications For Engineering Technology Students, Petros Katsioloudis, Mildred Jones
STEMPS Faculty Publications
Results from a number of studies indicate that the type of light generated by the reflection on the surface of different types of surfaces can influence the spatial visualization ability; however, research provides inconsistent results. Considering this, a quasi-experimental study was conducted to identify the existence of statistically significant effects on spatial visualization ability as measured by the Mental Cutting Test and Sectional View drawing ability due to the impacts of light reflection. In particular, the study compared three types of light reflection; mirror, specular and diffuse and whether a significant difference exists among engineering technology students. According to the …
Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi
Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi
Biology Faculty Works
GRNsight is a web application and service for visualizing models of gene regulatory networks (GRNs). A gene regulatory network (GRN) consists of genes, transcription factors, and the regulatory connections between them which govern the level of expression of mRNA and protein from genes. The original motivation came from our efforts to perform parameter estimation and forward simulation of the dynamics of a differential equations model of a small GRN with 21 nodes and 31 edges. We wanted a quick and easy way to visualize the weight parameters from the model which represent the direction and magnitude of the influence of …
Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow
Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow
Computer Science and Engineering Faculty Publications
Biologists doing high-throughput high-content cellular analysis are generally not computer scientists or high performance computing (HPC) experts, and they want their workflow to support their science without having to be. We describe a new HPC enabled data analytics workflow with a web interface, HPC pipeline for analysis, and both traditional and new analytics tools to help them transition from a single workstation mode of operation to power HPC users. This allows the processing of multiple plates over a short period of time to ensure timely query and analysis to match potential countermeasures to individual responses.
Retail Precinct Management: A Case Of Commercial Decentralization In Singapore, Robert De Souza, Hoong Chuin Lau, Mark Goh, Lindawati, Wee-Siong Ng, Puay-Siew Tan
Retail Precinct Management: A Case Of Commercial Decentralization In Singapore, Robert De Souza, Hoong Chuin Lau, Mark Goh, Lindawati, Wee-Siong Ng, Puay-Siew Tan
Research Collection School Of Computing and Information Systems
The synchronized last mile logistics concept seeks to address, through coordinated collaboration, several challenges that hinder reliability, cost efficiency, effective resource planning, scheduling and utilization; and increasingly, sustainability objectives. Subsequently, the meeting of service level and contractual commitments are competitively impacted with any loss of efficiency. These challenges, against a backdrop of Singapore, can essentially be addressed in selected industry sectors through a better understanding of logistics structures; innovative supply chain designs and coordination of services, operations and processes coupled with concerted policies and supply chain strategies.
Visual Analytics For Large Communication Trace Data, Jieting Wu
Visual Analytics For Large Communication Trace Data, Jieting Wu
Department of Computer Science and Engineering: Dissertations, Theses, and Student Research
Executions of modern parallel programs often yield complex communications among compute nodes of large-scale clusters of workstations or supercomputers. Analyzing communication patterns is becoming increasingly critical to performance optimiza- tion. As the scale and complexity of parallel applications drastically increases, visu- alization has become a feasible means to conduct analysis of massive communication patterns. However, most visualization tools fall short in showing comprehensive dy- namic communication graph and addressing the scalability issue. Our solution for analyzing dynamic communication patterns is based on an analytics framework cou- pled with a new visualization technique, named CommGram [29], that provides a flexible solution …
Evaluation Of Static Vs. Dynamic Visualizations For Engineering Technology Students And Implications On Spatial Visualization Ability: A Quasi-Experimental Study, Petros Katsioloudis, Daniel Dickerson, Vukica Jovanovic, Mildred Jones
Evaluation Of Static Vs. Dynamic Visualizations For Engineering Technology Students And Implications On Spatial Visualization Ability: A Quasi-Experimental Study, Petros Katsioloudis, Daniel Dickerson, Vukica Jovanovic, Mildred Jones
STEMPS Faculty Publications
The benefit of using static versus dynamic visualizations is a controversial one. Few studies have explored the effectiveness of static visualizations to those of dynamic visualizations, and the current state of the literature remains somewhat unclear. During the last decade there has been a lengthy debate about the opportunities for using animation in learning and instruction. More specifically it has been shown that dynamic visualizations often provide no advantages over static visualizations. If they had shown advantages, it was due to the fact that more information was available in the animated than in the static version. Given this result, the …
Low Cost Infrared And Near Infrared Sensors For Uavs, Samuel T. Aden, James P. Bialas, Zachary Champion, Eugene Levin, Jessica L. Mccarty
Low Cost Infrared And Near Infrared Sensors For Uavs, Samuel T. Aden, James P. Bialas, Zachary Champion, Eugene Levin, Jessica L. Mccarty
Michigan Tech Research Institute Publications
Thermal remote sensing has a wide range of applications, though the extent of its use is inhibited by cost. Robotic and computer components are now widely available to consumers on a scale that makes thermal data a readily accessible resource. In this project, thermal imagery collected via a lightweight remote sensing Unmanned Aerial Vehicle (UAV) was used to create a surface temperature map for the purpose of providing wildland firefighting crews with a cost-effective and time-saving resource. The UAV system proved to be flexible, allowing for customized sensor packages to be designed that could include visible or infrared cameras, GPS, …
Placing Videos On A Semantic Hierarchy For Search Result Navigation, Song Tan, Yu-Gang Jiang, Chong-Wah Ngo
Placing Videos On A Semantic Hierarchy For Search Result Navigation, Song Tan, Yu-Gang Jiang, Chong-Wah Ngo
Research Collection School Of Computing and Information Systems
Organizing video search results in a list view is widely adopted by current commercial search engines, which cannot support efficient browsing for complex search topics that have multiple semantic facets. In this article, we propose to organize video search results in a highly structured way. Specifically, videos are placed on a semantic hierarchy that accurately organizes various facets of a given search topic. To pick the most suitable videos for each node of the hierarchy, we define and utilize three important criteria: relevance, uniqueness, and diversity. Extensive evaluations on a large YouTube video dataset demonstrate the effectiveness of our approach.
Riskvis: Supply Chain Visualization With Risk Management And Real-Time Monitoring, Rick S. M. Goh, Zhaoxia Wang, Xiaofeng Yin, Xiuju Fu, Loganathan Ponnanbalam, Sifei Lu, Xiaorong Li
Riskvis: Supply Chain Visualization With Risk Management And Real-Time Monitoring, Rick S. M. Goh, Zhaoxia Wang, Xiaofeng Yin, Xiuju Fu, Loganathan Ponnanbalam, Sifei Lu, Xiaorong Li
Research Collection School Of Computing and Information Systems
With increased complexity, supply chain networks (SCNs) of modern era face higher risks and lower efficiency due to limited visibility. Hence, there is an immediate need to provide end-to-end supply chain visibility for efficient management of complex supply chains. This paper proposes a visualization scheme based on multi-hierarchical modular design and develops a supply chain visualization platform with risk management and real-time monitoring, named RiskVis, for realizing better Supply Chain Risk Management (SCRM). A Supply Chain Visualizer (SCV) with a graphical visualization platform is mounted as a part of a SCRM management decision-making dashboard and it provides senior management a …
Lonomics Atlas: A Tool To Explore Interconnected Ionomic, Genomic And Environmental Data, Eduard Dragut, Amgad Madkour, Mohamed Nabeel, Peter Baker, Mourad Ouzzani, David Salt
Lonomics Atlas: A Tool To Explore Interconnected Ionomic, Genomic And Environmental Data, Eduard Dragut, Amgad Madkour, Mohamed Nabeel, Peter Baker, Mourad Ouzzani, David Salt
Cyber Center Publications
Ionomics Atlas facilitates access, analysis and interpretation of an existing large-scale heterogeneous dataset consisting of ionomic (elemental composition of an organism), ge- netic (heritable changes in the DNA of an organism) and ge- ographic information (geographic location, altitude, climate, soil properties, etc). Ionomics Atlas allows connections to be made between the genetic regulation of the ionome of plant populations and their landscape distribution, allowing scientists to investigate the role of natural ionomic variation in adaptation of populations to varied environmental conditions in the landscape. The goal of the Ionomics Atlas is twofold: (1) to allow both novice and expert users …
Fast Stochastic Wiener Filter For Super-Resolution Image Restoration With Information Theoretic Visual Quality Assessment, Amr Hussein Yousef, Jiang Li, Mohammad Karim, Mark Allen Neifeld (Ed.), Amit Ashok (Ed.)
Fast Stochastic Wiener Filter For Super-Resolution Image Restoration With Information Theoretic Visual Quality Assessment, Amr Hussein Yousef, Jiang Li, Mohammad Karim, Mark Allen Neifeld (Ed.), Amit Ashok (Ed.)
Electrical & Computer Engineering Faculty Publications
Super-resolution (SR) refers to reconstructing a single high resolution (HR) image from a set of subsampled, blurred and noisy low resolution (LR) images. The reconstructed image suffers from degradations such as blur, aliasing, photo-detector noise and registration and fusion error. Wiener filter can be used to remove artifacts and enhance the visual quality of the reconstructed images. In this paper, we introduce a new fast stochastic Wiener filter for SR reconstruction and restoration that can be implemented efficiently in the frequency domain. Our derivation depends on the continuous-discrete-continuous (CDC) model that represents most of the degradations encountered during the image-gathering …
Mathematical Model Development Of Super-Resolution Image Wiener Restoration, Amr H. Yousef, Jiang Li, Mohammad A. Karim
Mathematical Model Development Of Super-Resolution Image Wiener Restoration, Amr H. Yousef, Jiang Li, Mohammad A. Karim
Electrical & Computer Engineering Faculty Publications
In super-resolution (SR), a set of degraded low-resolution (LR) images are used to reconstruct a higher-resolution image that suffers from acquisition degradations. One way to boost SR images visual quality is to use restoration filters to remove reconstructed images artifacts. We propose an efficient method to optimally allocate the LR pixels on the high-resolution grid and introduce a mathematical derivation of a stochastic Wiener filter. It relies on the continuous-discrete-continuous model and is constrained by the periodic and nonperiodic interrelationships between the different frequency components of the proposed SR system. We analyze an end-to-end model and formulate the Wiener filter …
Procedural Wound Geometry And Blood Flow Generation For Medical Training Simulators, Rifat Aras, Yuzhong Shen, Jiang Li, David R. Holmes Iii (Ed.), Kenneth H. Wong (Ed.)
Procedural Wound Geometry And Blood Flow Generation For Medical Training Simulators, Rifat Aras, Yuzhong Shen, Jiang Li, David R. Holmes Iii (Ed.), Kenneth H. Wong (Ed.)
Electrical & Computer Engineering Faculty Publications
Efficient application of wound treatment procedures is vital in both emergency room and battle zone scenes. In order to train first responders for such situations, physical casualty simulation kits, which are composed of tens of individual items, are commonly used. Similar to any other training scenarios, computer simulations can be effective means for wound treatment training purposes. For immersive and high fidelity virtual reality applications, realistic 3D models are key components. However, creation of such models is a labor intensive process. In this paper, we propose a procedural wound geometry generation technique that parameterizes key simulation inputs to establish the …
Tracking Web Video Topics: Discovery, Visualization, And Monitoring, Juan Cao, Chong-Wah Ngo, Yong-Dong Zhang, Jin-Tao Li
Tracking Web Video Topics: Discovery, Visualization, And Monitoring, Juan Cao, Chong-Wah Ngo, Yong-Dong Zhang, Jin-Tao Li
Research Collection School Of Computing and Information Systems
Despite the massive growth of web-shared videos in Internet, efficient organization and monitoring of videos remains a practical challenge. While nowadays broadcasting channels are keen to monitor online events, identifying topics of interest from huge volume of user uploaded videos and giving recommendation to emerging topics are by no means easy. Specifically, such process involves discovering of new topic, visualization of the topic content, and incremental monitoring of topic evolution. This paper studies the problem from three aspects. First, given a large set of videos collected over months, an efficient algorithm based on salient trajectory extraction on a topic evolution …
Tuning Tabu Search Strategies Via Visual Diagnosis, Steven Halim, Hoong Chuin Lau
Tuning Tabu Search Strategies Via Visual Diagnosis, Steven Halim, Hoong Chuin Lau
Research Collection School Of Computing and Information Systems
While designing working metaheuristics can be straightforward, tuning them to solve the underlying combinatorial optimization problem well can be tricky. Several tuning methods have been proposed but they do not address the new aspect of our proposed classification of the metaheuristic tuning problem: tuning search strategies. We propose a tuning methodology based on Visual Diagnosis and a generic tool called Visualizer for Metaheuristics Development Framework(V-MDF) to address specifically the problem of tuning search (particularly Tabu Search) strategies. Under V-MDF, we propose the use of a Distance Radar visualizer where the human and computer can collaborate to diagnose the occurrence of …
Data Management And Visualization Of X-Ray Diffraction Spectra From Thin Film Ternary Composition Spreads, I. Takeuchi, C. J. Long, O. O. Famodu, M. Murakami, Jason R. Hattrick-Simpers, G. W. Rubloff, M. Stukowski, K. Rajan
Data Management And Visualization Of X-Ray Diffraction Spectra From Thin Film Ternary Composition Spreads, I. Takeuchi, C. J. Long, O. O. Famodu, M. Murakami, Jason R. Hattrick-Simpers, G. W. Rubloff, M. Stukowski, K. Rajan
Faculty Publications
We discuss techniques for managing and visualizing x-ray diffraction spectrum data for thin film composition spreads which map large fractions of ternary compositional phase diagrams. An in-house x-ray microdiffractometer is used to obtain spectra from over 500 different compositions on an individual spread. The MATLAB software is used to quickly organize the data and create various plots from which one can quickly grasp different information regarding structural and phase changes across the composition spreads. Such exercises are valuable in rapidly assessing the “overall” picture of the structural evolution across phase diagrams before focusing in on specific composition regions for detailed …