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Full-Text Articles in Physical Sciences and Mathematics

Overcoming Uncertainties In Molecular Visualization, Thomas Wischgoll Feb 2023

Overcoming Uncertainties In Molecular Visualization, Thomas Wischgoll

Computer Science and Engineering Faculty Publications

Uncertainties are difficult if not impossible to avoid. Capturing data from the analog world almost always results in some form of uncertainty. The amount of uncertainty depends on the method of measurement and its accuracy. When visualizing data that has some associated uncertainty, it is essential to properly process and convey such uncertainty and especially the amount of uncertainty keeping in mind that additional processing steps can amplify the uncertainty. There are various sources of uncertainty, such as numerical limitations or limitations of the capture device. However, there are other sources of uncertainty. Some of these uncertainties stem from model …


A Cloud Computing-Based Dashboard For The Visualization Of Motivational Interviewing Metrics, E Jinq Heng Jan 2022

A Cloud Computing-Based Dashboard For The Visualization Of Motivational Interviewing Metrics, E Jinq Heng

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Motivational Interviewing (MI) is an evidence-based brief interventional technique that has been demonstrated to be effective in triggering behavior change in patients. To facilitate behavior change, healthcare practitioners adopt a nonconfrontational, empathetic dialogic style, a core component of MI. Despite its advantages, MI has been severely underutilized mainly due to the cognitive overload on the part of the MI dialogue evaluator, who has to assess MI dialogue in real-time and calculate MI characteristic metrics (number of open-ended questions, close-ended questions, reflection, and scale-based sentences) for immediate post-session evaluation both in MI training and clinical settings. To automate dialogue assessment and …


Stream Clustering And Visualization Of Geotagged Text Data For Crisis Management, Nathaniel C. Crossman Jan 2020

Stream Clustering And Visualization Of Geotagged Text Data For Crisis Management, Nathaniel C. Crossman

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In the last decade, the advent of social media and microblogging services have inevitably changed our world. These services produce vast amounts of streaming data, and one of the most important ways of analyzing and discovering interesting trends in the streaming data is through clustering. In clustering streaming data, it is desirable to perform a single pass over incoming data, such that we do not need to process old data again, and the clustering model should evolve over time not to lose any important feature statistics of the data. In this research, we have developed a new clustering system that …


Stream Clustering And Visualization Of Geotagged Text Data For Crisis Management, Nathaniel C. Crossman Jan 2020

Stream Clustering And Visualization Of Geotagged Text Data For Crisis Management, Nathaniel C. Crossman

Browse all Theses and Dissertations

In the last decade, the advent of social media and microblogging services have inevitably changed our world. These services produce vast amounts of streaming data, and one of the most important ways of analyzing and discovering interesting trends in the streaming data is through clustering. In clustering streaming data, it is desirable to perform a single pass over incoming data, such that we do not need to process old data again, and the clustering model should evolve over time not to lose any important feature statistics of the data. In this research, we have developed a new clustering system that …


Speech Enabled Navigation In Virtual Environments, Raksha Rajashekar Jan 2019

Speech Enabled Navigation In Virtual Environments, Raksha Rajashekar

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Navigating in a Virtual Environment with traditional input devices such as mouse, joysticks and keyboards provide limited maneuverability and is also time consuming. While working in a virtual environment, changing parameters to obtain the desired visualization requires time to achieve by manually entering parameter values in an algorithm to test outcomes. The following thesis presents an alternate user interface to reduce user efforts, while navigating within the Virtual Environment. The user interface is an Android application which is designed to accommodate spoken commands. This Speech Enabled User Interface termed as the Speech Navigation Application (SNA), provides the user with an …


Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow Jan 2016

Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow

Computer Science and Engineering Faculty Publications

Biologists doing high-throughput high-content cellular analysis are generally not computer scientists or high performance computing (HPC) experts, and they want their workflow to support their science without having to be. We describe a new HPC enabled data analytics workflow with a web interface, HPC pipeline for analysis, and both traditional and new analytics tools to help them transition from a single workstation mode of operation to power HPC users. This allows the processing of multiple plates over a short period of time to ensure timely query and analysis to match potential countermeasures to individual responses.


Computer Graphics And Visualization Based Analysis And Record System For Hand Surgery And Therapy Practice, Venkatamanikanta Subrahmanyakartheek Gokavarapu Jan 2016

Computer Graphics And Visualization Based Analysis And Record System For Hand Surgery And Therapy Practice, Venkatamanikanta Subrahmanyakartheek Gokavarapu

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In this thesis, we have designed and developed a computer graphics and visualization based analysis and record system for hand surgery and therapy practice. In particular, we have designed and developed three novel technologies: (i) model-based data compression for hand motion records (ii) model-based surface area estimation of a human hand and (iii) an emulated study of hand wound area estimation. First, we have presented a new data compression technique to better address the needs of electronic health record systems, such as file storage and privacy. In our proposed approach, we will extract the patient's hand motion information and store …


Miniatured Inertial Motion And Position Tracking And Visualization Systems Using Android Wear Platform, Dhruvkumar Navinchandra Patel Jan 2016

Miniatured Inertial Motion And Position Tracking And Visualization Systems Using Android Wear Platform, Dhruvkumar Navinchandra Patel

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In this thesis, we have designed and developed a motion tracking and visualization system using the latest motion tracking sensory technologies. It is one of the enabling technologies for our novel visual-inertial odometer and human anatomy based 3D Locating, Mapping and Navigation system for endoscopy and drug delivery capsules used inside GI tract. In particular, we have: i) designed and completed a cloud-based sensory data collecting, processing and storage system to provide the reliable computing and storage platform; ii) explored different data processing methods to obtain improved-quality motion results from extremely noisy raw data, e.g., by using a low pass …


Browser Based Visualization For Parameter Spaces Of Big Data Using Client-Server Model, Kurtis M. Glendenning Jan 2015

Browser Based Visualization For Parameter Spaces Of Big Data Using Client-Server Model, Kurtis M. Glendenning

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Visualization is an important task in data analytics, as it allows researchers to view abstract patterns within the data instead of reading through extensive raw data. Allowing the ability to interact with the visualizations is an essential aspect since it provides the ability to intuitively explore data to find meaning and patterns more efficiently. Interactivity, however, becomes progressively more difficult as the size of the dataset increases. This project begins by leveraging existing web-based data visualization technologies and extends their functionality through the use of parallel processing. This methodology utilizes state-of-the-art techniques, such as Node.js, to split the visualization rendering …