Physical Sciences and Mathematics Commons^™

Solving The Data Deluge Problem, Jens G. Pohl

Collaborative Agent Design (CAD) Research Center

The paper postulates that the information technology revolution that is commonly referred to as the Information Age is currently in a transition stage between data-processing and knowledge management that should be more aptly referred to as the Data Age. Symptoms of this transition stage are a data deluge problem that is evidenced by the inability of human computer-users to effectively analyze and draw useful conclusions from the overwhelming volume of data that is being collected, the increasing complexity of networked systems, and the acknowledged vulnerability of virtually all existing digital systems to cyber security threats.

The author suggests that the …

Biomedical Ontologies For Parasite Research, Vinh Nguyen, Satya S. Sahoo, Priti Parikh, Todd Minning, Brent Weatherly, Flora Logan, Amit P. Sheth, Rick Tarleton

Kno.e.sis Publications

Trypanosoma cruzi is a protozoan parasite that causes Chagas disease or American trypanosomiasis, which is the leading cause of death in Latin America. The primary objective of this study is to create an ontology-driven information infrastructure to support parasite researchers in identifying gene knockout, vaccination, or drug targets for T. cruzi. This involves querying across multiple datasets from diverse sources, such as proteome, pathway, internal lab data, etc. that are often represented in heterogeneous formats. To address this, a multi-ontology parasite knowledge repository (PKR) is being created with an intuitive graphical query interface called Cuebee. The PKR is underpinned by …

Automatic Extraction From And Reasoning About Genealogical Records: A Prototype, Charla Jean Woodbury

Theses and Dissertations

Family history research on the web is increasing in popularity, and many competing genealogical websites host large amounts of data-rich, unstructured, primary genealogical records. It is labor-intensive, however, even after making these records machine-readable, for humans to make these records easily searchable. What we need are computer tools that can automatically produce indices and databases from these genealogical records and can automatically identify individuals and events, determine relationships, and put families together. We propose here a possible solution—specialized ontologies, built specifically for extracting information from primary genealogical records, with expert logic and rules to infer genealogical facts and assemble relationship …

Provenance Management In Parasite Research, Vinh Nguyen, Priti Parikh, Satya S. Sahoo, Amit P. Sheth

Kno.e.sis Publications

The objective of this research is to create a semantic problem solving environment (PSE) for human parasite Trypanosoma cruzi. As a part of the PSE, we are trying to manage provenance of the experiment data as it is generated. It requires to capture the provenance which is often collected through web forms used by biologists to input the information about experiments they conduct. We have created Parasite Experiment Ontology (PEO) that represents provenance information used in the project. We have modified the back end which processes the data gathered from biologists, generates RDF triples and serializes them into the triple …

Creating A Biomedical Ontology Indexed Search Engine To Improve The Semantic Relevance Of Retreived Medical Text, William Taylor Ii

All Dissertations

Medical Subject Headings (MeSH) is a controlled vocabulary used by the National Library of Medicine to index medical articles, abstracts, and journals contained within the MEDLINE database. Although MeSH imposes uniformity and consistency in the indexing process, it has been proven that using MeSH indices only result in a small increase in precision over free-text indexing. Moreover, studies have shown that the use of controlled vocabularies in the indexing process is not an effective method to increase semantic relevance in information retrieval.
To address the need for semantic relevance, we present an ontology-based information retrieval system for the MEDLINE collection …

Wikipedia2onto: Building Concept Ontology Automatically, Experimenting With Web Image Retrieval, Huan Wang, Xing Jiang, Liang-Tien Chia, Ah-Hwee Tan

Research Collection School Of Computing and Information Systems

Given its effectiveness to better understand data, ontology has been used in various domains including artificial intelligence, biomedical informatics and library science. What we have tried to promote is the use of ontology to better understand media (in particular, images) on the World Wide Web. This paper describes our preliminary attempt to construct a large-scale multi-modality ontology, called AutoMMOnto, for web image classification. Particularly, to enable the automation of text ontology construction, we take advantage of both structural and content features of Wikipedia and formalize real world objects in terms of concepts and relationships. For visual part, we train classifiers …

Improving Software Quality Using An Ontology-Based Approach, Yixin Luo

LSU Doctoral Dissertations

Ensuring quality in software development is a challenging process. The concepts of anti-pattern and bad code smells utilize the knowledge of reoccurring problems to improve the quality of current and future software development. Anti-patterns describe recurring bad design solutions while bad code smells describe source code that is error-free but difficult to understand and maintain. Code refactoring aims to remove bad code smells without changing a program’s functionality while improving program quality. There are metrics-based tools to detect a few bad code smells from source code; however, the knowledge and understanding of these indicators of low quality software are still …