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Full-Text Articles in Physical Sciences and Mathematics

Automating Change-Level Self-Admitted Technical Debt Determination, Meng Yan, Xin Xia, Emad Shihab, David Lo, Jianwei Yin, Xiaohu Yang Dec 2019

Automating Change-Level Self-Admitted Technical Debt Determination, Meng Yan, Xin Xia, Emad Shihab, David Lo, Jianwei Yin, Xiaohu Yang

Research Collection School Of Computing and Information Systems

Self-Admitted Technical Debt (SATD) refers to technical debt that is introduced intentionally. Previous studies that identify SATD at the file-level in isolation cannot describe the TD context related to multiple files. Therefore, it is more beneficial to identify the SATD once a change is being made. We refer to this type of TD identification as “Change-level SATD Determination”, and identifying SATD at the change-level can help to manage and control TD by understanding the TD context through tracing the introducing changes. In this paper, we propose a change-level SATD Determination mode by extracting 25 features from software changes that are …


Rotation Invariant Convolutions For 3d Point Clouds Deep Learning, Zhiyuan Zhang, Binh-Son Hua, David W. Rosen, Sai-Kit Yeung Sep 2019

Rotation Invariant Convolutions For 3d Point Clouds Deep Learning, Zhiyuan Zhang, Binh-Son Hua, David W. Rosen, Sai-Kit Yeung

Research Collection School Of Computing and Information Systems

Recent progresses in 3D deep learning has shown that it is possible to design special convolution operators to consume point cloud data. However, a typical drawback is that rotation invariance is often not guaranteed, resulting in networks that generalizes poorly to arbitrary rotations. In this paper, we introduce a novel convolution operator for point clouds that achieves rotation invariance. Our core idea is to use low-level rotation invariant geometric features such as distances and angles to design a convolution operator for point cloud learning. The well-known point ordering problem is also addressed by a binning approach seamlessly built into the …


Fkrr-Mvsf: A Fuzzy Kernel Ridge Regression Model For Identifying Dna-Binding Proteins By Multi-View Sequence Features Via Chou's Five-Step Rule, Yi Zou, Yijie Ding, Jijun Tang, Fei Guo, Li Peng Sep 2019

Fkrr-Mvsf: A Fuzzy Kernel Ridge Regression Model For Identifying Dna-Binding Proteins By Multi-View Sequence Features Via Chou's Five-Step Rule, Yi Zou, Yijie Ding, Jijun Tang, Fei Guo, Li Peng

Faculty Publications

DNA-binding proteins play an important role in cell metabolism. In biological laboratories, the detection methods of DNA-binding proteins includes yeast one-hybrid methods, bacterial singles and X-ray crystallography methods and others, but these methods involve a lot of labor, material and time. In recent years, many computation-based approachs have been proposed to detect DNA-binding proteins. In this paper, a machine learning-based method, which is called the Fuzzy Kernel Ridge Regression model based on Multi-View Sequence Features (FKRR-MVSF), is proposed to identifying DNA-binding proteins. First of all, multi-view sequence features are extracted from protein sequences. Next, a Multiple Kernel Learning (MKL) algorithm …


Fkrr-Mvsf: A Fuzzy Kernel Ridge Regression Model For Identifying Dna-Binding Proteins By Multi-View Sequence Features Via Chou's Five-Step Rule, Yi Zou, Yije Ding, Jijun Tang, Fei Guo, Li Peng Sep 2019

Fkrr-Mvsf: A Fuzzy Kernel Ridge Regression Model For Identifying Dna-Binding Proteins By Multi-View Sequence Features Via Chou's Five-Step Rule, Yi Zou, Yije Ding, Jijun Tang, Fei Guo, Li Peng

Faculty Publications

DNA-binding proteins play an important role in cell metabolism. In biological laboratories, the detection methods of DNA-binding proteins includes yeast one-hybrid methods, bacterial singles and X-ray crystallography methods and others, but these methods involve a lot of labor, material and time. In recent years, many computation-based approachs have been proposed to detect DNA-binding proteins. In this paper, a machine learning-based method, which is called the Fuzzy Kernel Ridge Regression model based on Multi-View Sequence Features (FKRR-MVSF), is proposed to identifying DNA-binding proteins. First of all, multi-view sequence features are extracted from protein sequences. Next, a Multiple Kernel Learning (MKL) algorithm …


A Structural Based Feature Extraction For Detecting The Relation Of Hidden Substructures In Coral Reef Images, Mahmood Sotoodeh, Mohammad Reza Moosavi, Reza Boostani Aug 2019

A Structural Based Feature Extraction For Detecting The Relation Of Hidden Substructures In Coral Reef Images, Mahmood Sotoodeh, Mohammad Reza Moosavi, Reza Boostani

Computer Science Student Research

In this paper, we present an efficient approach to extract local structural color texture features for classifying coral reef images. Two local texture descriptors are derived from this approach. The first one, based on Median Robust Extended Local Binary Pattern (MRELBP), is called Color MRELBP (CMRELBP). CMRELBP is very accurate and can capture the structural information from color texture images. To reduce the dimensionality of the feature vector, the second descriptor, co-occurrence CMRELBP (CCMRELBP) is introduced. It is constructed by applying the Integrative Co-occurrence Matrix (ICM) on the Color MRELBP images. This way we can detect and extract the relative …


Low-Rank Sparse Subspace For Spectral Clustering, Xiaofeng Zhu, Shichao Zhang, Yonggang Li, Jilian Zhang, Lifeng Yang, Yue Fang Aug 2019

Low-Rank Sparse Subspace For Spectral Clustering, Xiaofeng Zhu, Shichao Zhang, Yonggang Li, Jilian Zhang, Lifeng Yang, Yue Fang

Research Collection School Of Computing and Information Systems

The current two-step clustering methods separately learn the similarity matrix and conduct k means clustering. Moreover, the similarity matrix is learnt from the original data, which usually contain noise. As a consequence, these clustering methods cannot achieve good clustering results. To address these issues, this paper proposes a new graph clustering methods (namely Low-rank Sparse Subspace clustering (LSS)) to simultaneously learn the similarity matrix and conduct the clustering from the low-dimensional feature space of the original data. Specifically, the proposed LSS integrates the learning of similarity matrix of the original feature space, the learning of similarity matrix of the low-dimensional …


Transfer Learning Approach To Multiclass Classification Of Child Facial Expressions, Megan A. Witherow, Manar D. Samad, Khan M. Iftekharuddin Jan 2019

Transfer Learning Approach To Multiclass Classification Of Child Facial Expressions, Megan A. Witherow, Manar D. Samad, Khan M. Iftekharuddin

Electrical & Computer Engineering Faculty Publications

The classification of facial expression has been extensively studied using adult facial images which are not appropriate ground truths for classifying facial expressions in children. The state-of-the-art deep learning approaches have been successful in the classification of facial expressions in adults. A deep learning model may be better able to learn the subtle but important features underlying child facial expressions and improve upon the performance of traditional machine learning and feature extraction methods. However, unlike adult data, only a limited number of ground truth images exist for training and validating models for child facial expression classification and there is a …


Analyzing Happiness: Investigation On Happy Moments Using A Bag-Of-Words Approach And Related Ethical Discussions, Riddhiman Adib, Eyad Aldawood, Nathan Lang, Nina Lasswell, Shion Guha Jan 2019

Analyzing Happiness: Investigation On Happy Moments Using A Bag-Of-Words Approach And Related Ethical Discussions, Riddhiman Adib, Eyad Aldawood, Nathan Lang, Nina Lasswell, Shion Guha

Computer Science Faculty Research and Publications

In this research paper, we analyzed what moments and activities make people happy, based on a collection of happy moments. We are focusing on specific happy moments from a collection of text responses that people have shared through the crowd-sourcing platform: Amazon Mechanical Turk (MTurk). Using crowd-sourcing to collect our data allows us to advance our understanding of the cause of happiness, by focusing on words and real human experiences. Workers of MTurk were asked to reflect on what makes them happy in a given period and share three specific moments in complete sentences. Through text-based analysis, we will look …