Physical Sciences and Mathematics Commons^™

Nonparametric Collective Spectral Density Estimation With An Application To Clustering The Brain Signals, Mehdi Maadooliat, Ying Sun, Tianbo Chen

Mathematics, Statistics and Computer Science Faculty Research and Publications

In this paper, we develop a method for the simultaneous estimation of spectral density functions (SDFs) for a collection of stationary time series that share some common features. Due to the similarities among the SDFs, the log‐SDF can be represented using a common set of basis functions. The basis shared by the collection of the log‐SDFs is estimated as a low‐dimensional manifold of a large space spanned by a prespecified rich basis. A collective estimation approach pools information and borrows strength across the SDFs to achieve better estimation efficiency. Moreover, each estimated spectral density has a concise representation using the …

The International Conference On Intelligent Biology And Medicine (Icibm) 2018: Bioinformatics Towards Translational Applications, Xiaoming Liu, Lei Xie, Zhijin Wu, Kai Wang, Zhongming Zhao, Jianhuan Ruan, Degui Zhi

Publications and Research

The 2018 International Conference on Intelligent Biology and Medicine (ICIBM 2018) was held on June 10–12, 2018, in Los Angeles, California, USA. The conference consisted of a total of eleven scientific sessions, four tutorials, one poster session, four keynote talks and four eminent scholar talks, which covered a wild range of aspects of bioinformatics, medical informatics, systems biology and intelligent computing. Here, we summarize nine research articles selected for publishing in BMC Bioinformatics.

Discerning Novel Splice Junctions Derived From Rna-Seq Alignment: A Deep Learning Approach, Yi Zhang, Xinan Liu, James N. Macleod, Jinze Liu

Computer Science Faculty Publications

Background: Exon splicing is a regulated cellular process in the transcription of protein-coding genes. Technological advancements and cost reductions in RNA sequencing have made quantitative and qualitative assessments of the transcriptome both possible and widely available. RNA-seq provides unprecedented resolution to identify gene structures and resolve the diversity of splicing variants. However, currently available ab initio aligners are vulnerable to spurious alignments due to random sequence matches and sample-reference genome discordance. As a consequence, a significant set of false positive exon junction predictions would be introduced, which will further confuse downstream analyses of splice variant discovery and abundance estimation.

Results: …

The Principles Of Course Design In Upgrading College Computer Science Courses With Applications To Prog37721, Alexander Tetervak

Publications and Scholarship

Is it possible to build a framework, based on pedagogical research, for developing and upgrading college Computer Science courses?

• Determine what can be done

• Outline a sustainable framework, as much as possible

• Validate the framework with a representative case of a course upgrade

• Prepare materials for the consideration phase of the course upgrade

Self-Stabilizing Token Distribution With Constant-Space For Trees, Yuichi Sudo, Ajoy K. Datta, Lawrence L. Larmore, Toshimitsu Masuzawa

Computer Science Faculty Research

Self-stabilizing and silent distributed algorithms for token distribution in rooted tree networks are given. Initially, each process of a graph holds at most l tokens. Our goal is to distribute the tokens in the whole network so that every process holds exactly k tokens. In the initial configuration, the total number of tokens in the network may not be equal to nk where n is the number of processes in the network. The root process is given the ability to create a new token or remove a token from the network. We aim to minimize the convergence time, the number …

Loosely-Stabilizing Leader Election With Polylogarithmic Convergence Time, Yuichi Sudo, Fukuhito Ooshita, Hirotsugu Kukugawa, Toshimitsu Masuzawa, Ajoy K. Datta, Lawrence L. Larmore

Computer Science Faculty Research

A loosely-stabilizing leader election protocol with polylogarithmic convergence time in the population protocol model is presented in this paper. In the population protocol model, which is a common abstract model of mobile sensor networks, it is known to be impossible to design a self-stabilizing leader election protocol. Thus, in our prior work, we introduced the concept of loose-stabilization, which is weaker than self-stabilization but has similar advantage as self-stabilization in practice. Following this work, several loosely-stabilizing leader election protocols are presented. The loosely-stabilizing leader election guarantees that, starting from an arbitrary configuration, the system reaches a safe configuration with a …

Pasnet: Pathway-Associated Sparse Deepneural Network For Prognosis Prediction From High-Throughput Data, Jie Hao, Youngsoon Kim, Tae-Kyung Kim, Mingon Kang

Faculty and Research Publications

Background: Predicting prognosis in patients from large-scale genomic data is a fundamentally challenging problem in genomic medicine. However, the prognosis still remains poor in many diseases. The poor prognosis maybe caused by high complexity of biological systems, where multiple biological components and their hierarchical relationships are involved. Moreover, it is challenging to develop robust computational solutions with high-dimension, low-sample size data. Results: In this study, we propose a Pathway-Associated Sparse Deep Neural Network (PASNet) that not only predicts patients’ prognoses but also describes complex biological processes regarding biological pathways for prognosis. PASNet models a multilayered, hierarchical biological system of genes …

Facial Expression Recognition By De-Expression Residue Learning, Huiyuan Yang, Umur Ciftci, Lijun Yin

Computer Science Faculty Research & Creative Works

A facial expression is a combination of an expressive component and a neutral component of a person. In this paper, we propose to recognize facial expressions by extracting information of the expressive component through a de-expression learning procedure, called De-expression Residue Learning (DeRL). First, a generative model is trained by cGAN. This model generates the corresponding neutral face image for any input face image. We call this procedure de-expression because the expressive information is filtered out by the generative model; however, the expressive information is still recorded in the intermediate layers. Given the neutral face image, unlike previous works using …

Mercyhealth Internship: It As A Unit, Frenz Joshua Hayag

Student Scholarship – Computer Science

This is a CSIS 494 Field Experience paper about an internship in a healthcare organization called MercyHealth. My internship would be described as generalized. The paper will be mainly talking about the different aspects of IT and how they all come together to create progress, and cohesiveness in the organization. I had the opportunity to see different aspects of their IT department by sitting down in project meetings. I was able to job shadow multiple staff from admins to PC techs to network engineers. I was able to see first-hand how an organization, and IT respond to disaster, and how …

Marktplatz Zur Koordinierung Und Finanzierung Von Open Source Software, Georg J.P. Link, Malvika Rao, Don Marti, Andy Leak, Rich Bodo

Information Systems and Quantitative Analysis Faculty Publications

Open Source ist ein zunehmend beliebter Kollaborationsmechanismus für die Entwicklung von Software, auch in Unternehmen. Unsere Arbeit schafft die fehlende Verbindung zwischen Open Source Projekten, Unternehmen und Märkten. Ohne diese Verbindung wurden Koordinations- und Finanzierungsprobleme sichtbar, die zu schwerwiegenden Sicherheitslücken führen. In diesem Paper entwickeln wir acht Design Features, die ein Marktplatz für Open Source haben sollte, um diese Probleme zu beseitigen. Wir begründen jedes Design Feature mit den bestehenden Praktiken von Open Source und stellen einen Prototypen vor. Abschließend diskutieren wir, welche Auswirkungen die Einführung eines solchen Marktplatzes haben könnte.

Translation: Marketplace to Coordinate and Finance Open Source Software …

Paul Baran, Network Theory, And The Past, Present, And Future Of Internet, Christopher S. Yoo

All Faculty Scholarship

Paul Baran’s seminal 1964 article “On Distributed Communications Networks” that first proposed packet switching also advanced an underappreciated vision of network architecture: a lattice-like, distributed network, in which each node of the Internet would be homogeneous and equal in status to all other nodes. Scholars who have subsequently embraced the concept of a lattice-like network approach have largely overlooked the extent to which it is both inconsistent with network theory (associated with the work of Duncan Watts and Albert-László Barabási), which emphasizes the importance of short cuts and hubs in enabling networks to scale, and the actual way, the Internet …

Open Source Foundations For Spatial Decision Support Systems, Jochen Albrecht

Publications and Research

Spatial Decision Support Systems (SDSS) were a hot topic in the 1990s, when researchers tried to imbue GIS with additional decision support features. Successful practical developments such as HAZUS or CommunityViz have since been built, based on commercial desktop software and without much heed for theory other than what underlies their process models. Others, like UrbanSim, have been completely overhauled twice but without much external scrutiny. Both the practical and the theoretical foundations of decision support systems have developed considerably over the past 20 years. This article presents an overview of these developments and then looks at what corresponding tools …

Multi-Task Zipping Via Layer-Wise Neuron Sharing, Xiaoxi He, Zimu Zhou, Lothar Thiele

Research Collection School Of Computing and Information Systems

Future mobile devices are anticipated to perceive, understand and react to the world on their own by running multiple correlated deep neural networks on-device. Yet the complexity of these neural networks needs to be trimmed down both within-model and cross-model to fit in mobile storage and memory. Previous studies squeeze the redundancy within a single model. In this work, we aim to reduce the redundancy across multiple models. We propose Multi-Task Zipping (MTZ), a framework to automatically merge correlated, pre-trained deep neural networks for cross-model compression. Central in MTZ is a layer-wise neuron sharing and incoming weight updating scheme that …

College Of Engineering Senior Design Competition Fall 2018, University Of Nevada, Las Vegas

Fred and Harriet Cox Senior Design Competition Projects

Part of every UNLV engineering student’s academic experience, the senior design project stimulates engineering innovation and entrepreneurship. Each student in their senior year chooses, plans, designs, and prototypes a product in this required element of the curriculum. A capstone to the student’s educational career, the senior design project encourages the student to use everything learned in the engineering program to create a practical, real world solution to an engineering challenge. The senior design competition helps focus the senior students in increasing the quality and potential for commercial application for their design projects. Judges from local industry evaluate the projects on …

Historical Effects Of Electronic Interfaces, G James Mitchell

Publications and Research

Electronic interfaces are a primary tool for most professional and personal communication currently happening. Electronics, like the human mind, are limited by the understanding of executing will, or commands. This can be characterized as “interface limitations” of digital technology. Identifying this bottleneck in technological development has been critical in historical changes to both hardware and software technology. Recent medical research examines a novel user interface to reduce task load. I hypothesize, interface developments that take cues from nonverbal human communication enhance and sustain the significance of those technologies in society. By examining pivotal moments of historical technology we can identify …

Tcp Server And Client: Bookstore Enquiry, Fawaz Bukhowa

Student Scholar Symposium Abstracts and Posters

An application called "Bookstore Enquiry", and it is implemented in Java using TCP client-server program. It contains two programs; one program is called "Server" and another one is called "Client". In this application, the 'server' maintains information about books and for each book it stores information like 'BookId', 'BookName', 'BookEdition', 'AvailableStock', 'UnitPrice', 'Discount'. This application works in such a way that, the server runs indefinitely and waits for client requests. The Client will accept the BookId & BookName from console and send it to server. If the server finds any books that matches with sent details, then it shows "BOOK …

Gmaim: An Analytical Pipeline For Microrna Splicing Profiling Using Generative Model, Kan Liu

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

MicroRNAs (miRNAs) are a class of short (~22 nt) single strand RNA molecules predominantly found in eukaryotes. Being involved in many major biological processes, miRNAs can regulate gene expression by targeting mRNAs to facilitate their degradation or translational inhibition. The imprecise splicing of miRNA splicing which introduces severe variability in terms of sequences of miRNA products and their corresponding downstream gene expression regulation. For example, to study biogenesis of miRNAs, usually, biologists can deplete a gene in the miRNA biogenesis pathway and study the change of miRNA sequences, which can cause impression of miRNAs. Although high-throughput sequencing technologies such as …

Facepet: Enhancing Bystanders' Facial Privacy With Smart Wearables/Internet Of Things, Alfredo J. Perez, Sherali Zeadally, Luis Y. Matos Garcia, Jaouad A. Mouloud, Scott Griffith

Information Science Faculty Publications

Given the availability of cameras in mobile phones, drones and Internet-connected devices, facial privacy has become an area of major interest in the last few years, especially when photos are captured and can be used to identify bystanders’ faces who may have not given consent for these photos to be taken and be identified. Some solutions to protect facial privacy in photos currently exist. However, many of these solutions do not give a choice to bystanders because they rely on algorithms that de-identify photos or protocols to deactivate devices and systems not controlled by bystanders, thereby being dependent on the …

Facepet: Enhancing Bystanders’ Facial Privacy With Smart Wearables/Internet Of Things, Alfredo J. Perez, Sherali Zeadally, Luis Y. Matos Garcia, Jason A. Mouloud, Scott Griffith

Computer Science Faculty Publications

Given the availability of cameras in mobile phones, drones and Internet-connected devices, facial privacy has become an area of major interest in the last few years, especially when photos are captured and can be used to identify bystanders’ faces who may have not given consent for these photos to be taken and be identified. Some solutions to protect facial privacy in photos currently exist. However, many of these solutions do not give a choice to bystanders because they rely on algorithms that de-identify photos or protocols to deactivate devices and systems not controlled by bystanders, thereby being dependent on the …

On The Exactitude Of Big Data: La Bêtise And Artificial Intelligence, Noel Fitzpatrick, John D. Kelleher

Articles

This article revisits the question of ‘la bêtise’ or stupidity in the era of Artificial Intelligence driven by Big Data, it extends on the questions posed by Gille Deleuze and more recently by Bernard Stiegler. However, the framework for revisiting the question of la bêtise will be through the lens of contemporary computer science, in particular the development of data science as a mode of analysis, sometimes, misinterpreted as a mode of intelligence. In particular, this article will argue that with the advent of forms of hype (sometimes referred to as the hype cycle) in relation to big data and …

Parallel Sampling-Pipeline For Indefinite Stream Of Heterogeneous Graphs Using Opencl For Fpgas, Muhammad Usman Tariq, Fahad Saeed

School of Computing and Information Sciences

In the field of data science, a huge amount of data, generally represented as graphs, needs to be processed and analyzed. It is of utmost importance that this data be processed swiftly and efficiently to save time and energy. The volume and velocity of data, along with irregular access patterns in graph data structures, pose challenges in terms of analysis and processing. Further, a big chunk of time and energy is spent on analyzing these graphs on large compute clusters and/or data-centers. Filtering and refining of data using graph sampling techniques are one of the most effective ways to speed …

The Rise Of Real-Time Retail Payments, Zhiling Guo

MITB Thought Leadership Series

TRANSACTING for just about anything using our mobile phones has become commonplace, and so many consumers will be intrigued to discover that after making a purchase it can still take longer for payment to reach a vendor’s bank account than it does for the purchased goods to be delivered.

Leveraging Artificial Intelligence To Capture The Singapore Rideshare Market, Pradeep Varakantham

MITB Thought Leadership Series

BIKE-SHARING programmes face many of the issues encountered by their counterparts in the carsharing world. But in Singapore, there are a number of factors that have a unique impact on the industry. These include the regulatory structure and the significant fines for those companies who do not abide by these regulations. When this is combined with the competitive nature of the industry in one of the world's most dynamic cities, it becomes clear that first movers who leverage machine learning and prediction will come to dominate the industry

Credit Assignment For Collective Multiagent Rl With Global Rewards, Duc Thien Nguyen, Akshat Kumar, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

Scaling decision theoretic planning to large multiagent systems is challenging due to uncertainty and partial observability in the environment. We focus on a multiagent planning model subclass, relevant to urban settings, where agent interactions are dependent on their collective influence'' on each other, rather than their identities. Unlike previous work, we address a general setting where system reward is not decomposable among agents. We develop collective actor-critic RL approaches for this setting, and address the problem of multiagent credit assignment, and computing low variance policy gradient estimates that result in faster convergence to high quality solutions. We also develop difference …

Sybmatch: Sybil Detection For Privacy-Preserving Task Matching In Crowdsourcing, Jiangang Shu, Ximeng Liu, Kan Yang, Yinghui Zhang, Xiaohua Jia, Robert H. Deng

Research Collection School Of Computing and Information Systems

The past decade has witnessed the rise of crowdsourcing, and privacy in crowdsourcing has also gained rising concern in the meantime. In this paper, we focus on the privacy leaks and sybil attacks during the task matching, and propose a privacy-preserving task matching scheme, called SybMatch. The SybMatch scheme can simultaneously protect the privacy of publishers and subscribers against semi-honest crowdsourcing service provider, and meanwhile support the sybil detection against greedy subscribers and efficient user revocation. Detailed security analysis and thorough performance evaluation show that the SybMatch scheme is secure and efficient.

Relationships Between Social Network Characteristics, Alcohol Use, And Alcohol-Related Consequences In A Large Network Of First-Year College Students: How Do Peer Drinking Norms Fit In?, Graham T. Diguiseppi, Matthew K. Meisel, Sara G. Balestrieri, Miles Q. Ott, Melissa A. Clark, Nancy P. Barnett

Statistical and Data Sciences: Faculty Publications

A burgeoning area of research is using social network analysis to investigate college students' substance use behaviors. However, little research has incorporated students' perceived peer drinking norms into these analyses. The present study investigated the association between social network characteristics, alcohol use, and alcohol-related consequences among first-year college students (N 1,342; 81% of the first-year class) at one university. The moderating role of descriptive norms was also examined. Network characteristics and descriptive norms were derived from participants' nominations of up to 10 other students who were important to them; individual network characteristics included popularity (indegree), network expansiveness (outdegree), relationship reciprocity, …

An Economic Analysis Of Incentivized Positive Reviews, Jianqing Chen, Zhiling Guo, Jian Huang

Research Collection School Of Computing and Information Systems

It becomes increasingly popular that some large online retailers such as Amazon open their platforms to allow third-party retail competitors to sell on their own platforms. We develop an analytical model to examine this retailer marketplace model and its business impact. We assume that a leading retailer has both valuation advantage that may come from its reputation and information advantage that may come from its brand awareness. We find that the availability of relatively low-cost advertising through social media or search engine can effectively reduce the leading retailer's information advantage, and thus be an important driving force for its strategic …

Integrating Node Embeddings And Biological Annotations For Genes To Predict Disease-Gene Associations, Sezin Kircali Ata, Le Ou-Yang, Yuan Fang, Chee-Keong Kwoh, Min Wu, Xiao-Li Li

Research Collection School Of Computing and Information Systems

Background: Predicting disease causative genes (or simply, disease genes) has played critical roles in understandingthe genetic basis of human diseases and further providing disease treatment guidelines. While various computationalmethods have been proposed for disease gene prediction, with the recent increasing availability of biologicalinformation for genes, it is highly motivated to leverage these valuable data sources and extract useful information foraccurately predicting disease genes. Results: We present an integrative framework called N2VKO to predict disease genes. Firstly, we learn the nodeembeddings from protein-protein interaction (PPI) network for genes by adapting the well-known representationlearning method node2vec. Secondly, we combine the learned node …

Making A Good Thing Better: Enhancing Password/Pin-Based User Authentication With Smartwatch, Bing Chang, Yingjiu Li, Qiongxiao Wang, Wen-Tao Zhu, Robert H. Deng

Research Collection School Of Computing and Information Systems

Wearing smartwatches becomes increasingly popular in people’s lives. This paper shows that a smartwatch can help its bearer authenticate to a login system effectively and securely even if the bearer’s password has already been revealed. This idea is motivated by our observation that a sensor-rich smartwatch is capable of tracking the wrist motions of its bearer typing a password or PIN, which can be used as an authentication factor. The major challenge in this research is that a sophisticated attacker may imitate a user’s typing behavior as shown in previous research on keystroke dynamics based user authentication. We address this …

An Architectural Design And Evaluation Of An Affective Tutoring System For Novice Programmers, Hua Leong Fwa

Research Collection School Of Computing and Information Systems

Affect is prevalent in learning and it influences students’ learning achievement. This paper details the design and evaluation of an Affective Tutoring System (ATS) that tutors student in computer programming. Although most ATSs are purpose built for a specific domain, making adaptation to another domain difficult, this ATS is architected for adaptability and extensibility. This study also addresses a lack of research exploring the theories and methods of integrating affect and learning within the learning process by proposing methods of regulating the negative affect of students. Both quantitative and qualitative techniques were used for evaluation of the effectiveness of the …