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Full-Text Articles in Physical Sciences and Mathematics

Protein Secondary Structure Prediction Using Parallelized Rule Induction From Coverings, Leong Lee, Cyriac Kandoth, Jennifer Leopold, Ronald L. Frank Dec 2009

Protein Secondary Structure Prediction Using Parallelized Rule Induction From Coverings, Leong Lee, Cyriac Kandoth, Jennifer Leopold, Ronald L. Frank

Computer Science Faculty Research & Creative Works

Protein 3D structure prediction has always been an important research area in bioinformatics. In particular, the prediction of secondary structure has been a well-studied research topic. Despite the recent breakthrough of combining multiple sequence alignment information and artificial intelligence algorithms to predict protein secondary structure, the Q3 accuracy of various computational prediction algorithms rarely has exceeded 75%. In a previous paper [1], this research team presented a rule-based method called RT-RICO (Relaxed Threshold Rule Induction from Coverings) to predict protein secondary structure. The average Q3 accuracy on the sample datasets using RT-RICO was 80.3%, an improvement over comparable computational methods. …


Learning Image‐Text Associations, Tao Jiang, Ah-Hwee Tan Feb 2009

Learning Image‐Text Associations, Tao Jiang, Ah-Hwee Tan

Research Collection School Of Computing and Information Systems

Web information fusion can be defined as the problem of collating and tracking information related to specific topics on the World Wide Web. Whereas most existing work on Web information fusion has focused on text-based multidocument summarization, this paper concerns the topic of image and text association, a cornerstone of cross-media Web information fusion. Specifically, we present two learning methods for discovering the underlying associations between images and texts based on small training data sets. The first method based on vague transformation measures the information similarity between the visual features and the textual features through a set of predefined domain-specific …