Physical Sciences and Mathematics Commons^™

Interactive Data Analysis Of Multi-Run Performance Data, Vanessa Lama

Masters Theses

Multi-dimensional performance data analysis presents challenges for programmers, and users. Developers have to choose library and compiler options for each platform, analyze raw performance data, and keep up with new technologies. Users run codes on different platforms, validate results with collaborators, and analyze performance data as applications scale up. Site operators use multiple profiling tools to optimize performance, requiring the analysis of multiple sources and data types. There is currently no comprehensive tool to support the structured analysis of unstructured data, when holistic performance data analysis can offer actionable insights and improve performance. In this work, we present thicket, a …

Quantum Simulation Using High-Performance Computing, Collin Beaudoin, Christian Trefftz, Zachary Kurmas

Masters Theses

Hermitian matrix multiplication is one of the most common actions that is performed on quantum matrices, for example, it is used to apply observables onto a given state vector/density matrix.

ρ→Hρ

Our goal is to create an algorithm to perform the matrix multiplication within the constraints of QuEST [1], a high-performance simulator for quantum circuits. QuEST provides a system-independent platform for implementing and simulating quantum algorithms without the need for access to quantum machines. The current implementation of QuEST supports CUDA, MPI, and OpenMP, which allows programs to run on a wide variety of systems.

Hsp-Wrap: The Design And Evaluation Of Reusable Parallelism For A Subclass Of Data-Intensive Applications, Paul R. Giblock

Masters Theses

There is an increasing gap between the rate at which data is generated by scientific and non-scientific fields and the rate at which data can be processed by available computing resources. In this paper, we introduce the fields of Bioinformatics and Cheminformatics; two fields where big data has become a problem due to continuing advances in the technologies that drives these fields: such as gene sequencing and small ligand exploration. We introduce high performance computing as a means to process this growing base of data in order to facilitate knowledge discovery. We enumerate goals of the project including reusability, efficiency, …