Physical Sciences and Mathematics Commons^™

Visualizing Digital Collections At Archive-It, Michele C. Weigle, Michael L. Nelson

Computer Science Presentations

PDF of a powerpoint presentation from a Archive-It Partners Meeting in Annapolis, Maryland, December 3, 2012. Also available on Slideshare.

Communications And Energy-Harvesting In Nanosensor Networks, Michele C. Weigle

Computer Science Presentations

PDF of a powerpoint presentation from the National Science Foundation (NSF) Workshop on Biological Computations and Communications in Boston, Massachusetts, November 9, 2012. Also available on Slideshare.

The Factors Behind A Successful Implementation Of Electronic Health Records Systems, Anjee Gorkhali

Engineering Management & Systems Engineering Theses & Dissertations

This research explores the role that budget for Information System (IS) and technical expertise of healthcare service provider staff play on the successful leap from a partial to exhaustive implementation of Electronic Health Records (EHR) Systems. Technical expertise in Information Systems might not be easily measurable directly, but there are a number of indicators that could be used as a proxy, such as: Information System (IS) Department Budget, number of IS staff and the extent of technical trainings provided by the IS department to the clinical staff. This research study hypothesizes that quality technical trainings conducted by an IS department …

Semi-Automatic Simulation Initialization By Mining Structured And Unstructured Data Formats From Local And Web Data Sources, Olcay Sahin

Computational Modeling & Simulation Engineering Theses & Dissertations

Initialization is one of the most important processes for obtaining successful results from a simulation. However, initialization is a challenge when 1) a simulation requires hundreds or even thousands of input parameters or 2) re-initializing the simulation due to different initial conditions or runtime errors. These challenges lead to the modeler spending more time initializing a simulation and may lead to errors due to poor input data.

This thesis proposes two semi-automatic simulation initialization approaches that provide initialization using data mining from structured and unstructured data formats from local and web data sources. First, the System Initialization with Retrieval (SIR) …

Visualizing Digital Collections At Archive-It, Kalpesh Padia

Computer Science Theses & Dissertations

Archive-It, a subscription service from the Internet Archive, allows users to create,maintain, and view digital collections of web resources. The current interface of Archive-It is largely text-based, supporting drill-down navigation using lists of URIs.While this interface provides good searching capabilities, it is not efficient for browsing. In the absence of keywords, a user has to spend large amount of time trying to locate a web page of interest. In order to provide a better visual experience to the user, we have studied the underlying characteristics of Archive-It collections and implemented six different visualizations (treemap, time cloud, bubble chart, image plot, …

An Extensible Framework For Creating Personal Archives Of Web Resources Requiring Authentication, Matthew Ryan Kelly

Computer Science Theses & Dissertations

The key factors for the success of the World Wide Web are its large size and the lack of a centralized control over its contents. In recent years, many advances have been made in preserving web content but much of this content (namely, social media content) was not archived, or still to this day is not being archived,for various reasons. Tools built to accomplish this frequently break because of the dynamic structure of social media websites. Because many social media websites exhibit a commonality in hierarchy of the content, it would be worthwhile to setup a means to reference this …

Incorporating Memory And Learning Mechanisms Into Meta-Raps, Arif Arin

Engineering Management & Systems Engineering Theses & Dissertations

Due to the rapid increase of dimensions and complexity of real life problems, it has become more difficult to find optimal solutions using only exact mathematical methods. The need to find near-optimal solutions in an acceptable amount of time is a challenge when developing more sophisticated approaches. A proper answer to this challenge can be through the implementation of metaheuristic approaches. However, a more powerful answer might be reached by incorporating intelligence into metaheuristics.

Meta-RaPS (Metaheuristic for Randomized Priority Search) is a metaheuristic that creates high quality solutions for discrete optimization problems. It is proposed that incorporating memory and learning …

De Novo Protein Structure Modeling From Cryoem Data Through A Dynamic Programming Algorithm In The Secondary Structure Topology Graph, Kamal H. Al Nasr

Computer Science Theses & Dissertations

Proteins are the molecules carry out the vital functions and make more than the half of dry weight in every cell. Protein in nature folds into a unique and energetically favorable 3-Dimensional (3-D) structure which is critical and unique to its biological function. In contrast to other methods for protein structure determination, Electron Cryorricroscopy (CryoEM) is able to produce volumetric maps of proteins that are poorly soluble, large and hard to crystallize. Furthermore, it studies the proteins in their native environment. Unfortunately, the volumetric maps generated by current advances in CryoEM technique produces protein maps at medium resolution about (~5 …

Friend: A Cyber-Physical System For Traffic Flow Related Information Aggregation And Dissemination, Samy S. El-Tawab

Computer Science Theses & Dissertations

The major contribution of this thesis is to lay the theoretical foundations of FRIEND — A cyber-physical system for traffic Flow-Related Information aggrEgatioN and Dissemination. By integrating resources and capabilities at the nexus between the cyber and physical worlds, FRIEND will contribute to aggregating traffic flow data collected by the huge fleet of vehicles on our roads into a comprehensive, near real-time synopsis of traffic flow conditions. We anticipate providing drivers with a meaningful, color-coded, at-a-glance view of flow conditions ahead, alerting them to congested traffic.

FRIEND can be used to provide accurate information about traffic flow and can be …

Serious Game Design Principles: The Impact Of Game Design On Learning Outcomes, Michael W. Martin

Computational Modeling & Simulation Engineering Theses & Dissertations

This dissertation examines the research question "How do video game design principles affect learning outcomes in serious games?" This research first develops a theoretical foundation concerning the meaning of the terms "game" and "serious game". This conceptual clarification is broken down into analytic propositions, which state that games have participants, rules, goals and challenges, and synthetic propositions, which state that the games should be intrinsically compelling, provide meaningful choices, and be self encapsulated. Based on these synthetic propositions, three hypotheses were developed. The hypotheses are that games with an enhanced aesthetic presentation, more meaningful choices, or provide player competition will …

Section Abstracts: Computer Science

Virginia Journal of Science

Abstracts of the Computer Science Section for the 90th Annual Meeting of the Virginia Academy of Science, May 23-25, 2012, Norfolk State University, Norfolk, Virginia.

Image-Guided Robotic Dental Implantation With Natural-Root-Formed Implants, Xiaoyan Sun

Electrical & Computer Engineering Theses & Dissertations

Dental implantation is now recognized as the standard of the care for tooth replacement. Although many studies show high short term survival rates greater than 95%, long term studies (> 5 years) have shown success rates as low as 41.9%. Reasons affecting the long term success rates might include surgical factors such as limited accuracy of implant placement, lack of spacing controls, and overheating during the placement.

In this dissertation, a comprehensive solution for improving the outcome of current dental implantation is presented, which includes computer-aided preoperative planning for better visualization of patient-specific information and automated robotic site-preparation for superior …

An Efficient Boosted Classifier Tree-Based Feature Point Tracking System For Facial Expression Analysis, Adam Redd Livingston

Electrical & Computer Engineering Theses & Dissertations

The study of facial movement and expression has been a prominent area of research since the early work of Charles Darwin. The Facial Action Coding System (FACS), developed by Paul Ekman, introduced the first universal method of coding and measuring facial movement. Human-Computer Interaction seeks to make human interaction with computer systems more effective, easier, safer, and more seamless. Facial expression recognition can be broken down into three distinctive subsections: Facial Feature Localization, Facial Action Recognition, and Facial Expression Classification. The first and most important stage in any facial expression analysis system is the localization of key facial features. Localization …

A Vision-Based Automatic Safe Landing-Site Detection System, Yufei Shen

Electrical & Computer Engineering Theses & Dissertations

An automatic safe landing-site detection system is proposed for aircraft emergency landing, based on visible information acquired by aircraft-mounted cameras. Emergency landing is an unplanned event in response to emergency situations. If, as is unfortunately usually the case, there is no airstrip or airfield that can be reached by the un-powered aircraft, a crash landing or ditching has to be carried out. Identifying a safe landing-site is critical to the survival of passengers and crew. Conventionally, the pilot chooses the landing-site visually by looking at the terrain through the cockpit. The success of this vital decision greatly depends on the …

Health Nexus: A Serious Game Prototype For Prevention And Treatment Of Obesity And Diabetes, Joseph C. Miller

Computational Modeling & Simulation Engineering Theses & Dissertations

Electronic games are a prevalent phenomenon of American culture and entertainment. Serious games are video games that take advantage of games' intrinsic entertaining and challenging characteristics for serious purposes, such as education, training, advertisement, and political campaigns. A significant number of serious games have been developed for a variety of diverse purposes. The last few years have witnessed the inception and growth of motion sensing technologies for games, including Nintendo Wii, Sony PlayStation Move, and Microsoft Kinect. These motion sensing technologies usually require game players' physical body movement in order to perform and achieve in the games, such as playing …

Exploring The Components Of Dynamic Modeling Techniques, Charles Daniel Turnitsa

Computational Modeling & Simulation Engineering Theses & Dissertations

Upon defining the terms modeling and simulation, it becomes apparent that there is a wide variety of different models, using different techniques, appropriate for different levels of representation for any one system to be modeled. Selecting an appropriate conceptual modeling technique from those available is an open question for the practitioner. Existing methods for describing techniques do not capture enough information about the expressive potential of those techniques such that an appropriate selection decision can be made. A formal method to describe conceptual modeling techniques that captures enough about the technique to distinguish it from others is identified as a …

Why Care About The Past?, Michael L. Nelson, Michele C. Weigle

Computer Science Presentations

A set of slides used in various presentations by the authors to show that replaying an experience via archived web pages is more compelling than reading a summary of the event. Also available on Slideshare.

Implementation And Assessment Of A Virtual Reality Experiment In The Undergraduate Themo-Fluids Laboratory, Sushil Chaturvedi, Jaewan Yoon, Rick Mckenzie, Petros J. Katsioloudis, Hector M. Garcia, Shuo Ren

Mechanical & Aerospace Engineering Faculty Publications

Results are presented from an NSF supported project that is geared towards advancing the development and use of virtual reality (VR) laboratories, designed to emulate the learning environment of physical laboratories. As part of this project, an experiment in the undergraduate thermo-fluids laboratory course titled "Jet Impact Force" was transformed into a 3-D virtual reality experiment using the widely used MAYA R and VIRTOOLS R software. In order to facilitate students' interactions with the newly created 3-D interactive, immersive and stereoscopic virtual laboratory environment, the human computer interfaces (HCI) were programmed and incorporated in the simulation software. Two immersion levels …

A Perspective On Resource Synchronization, Herbert Van De Sompel, Robert Sanderson, Martin Klein, Michael L. Nelson, Bernhard Haslhofer, Simeon Warner, Carl Lagoze

Computer Science Faculty Publications

Web applications frequently leverage resources made available by remote web servers. As resources are created, updated, deleted, or moved, these applications face challenges to remain in lockstep with changes on the server. Several approaches exist to help meet this challenge for use cases where "good enough" synchronization is acceptable. But when strict resource coverage or low synchronization latency is required, commonly accepted Web-based solutions remain illusive. This paper provides a perspective on the resource synchronization problem that results from inspiration gained from prior work, and initial insights resulting from the recently launched NISO/OAI ResourceSync effort.

Cooperation As A Service In Vanet: Implementation And Simulation Results, Hajar Mousannif, Ismail Khalil, Stephan Olariu

Computer Science Faculty Publications

The past decade has witnessed the emergence of Vehicular Ad-hoc Networks (VANET), specializing from the well-known Mobile Ad Hoc Networks (MANET) to Vehicle-to-Vehicle (V2V) and Vehicle-to-Infrastructure (V2I) wireless communications. While the original motivation for Vehicular Networks was to promote traffic safety, recently it has become increasingly obvious that Vehicular Networks open new vistas for Internet access, providing weather or road condition, parking availability, distributed gaming, and advertisement. In previous papers [27,28], we introduced Cooperation as a Service (CaaS); a new service-oriented solution which enables improved and new services for the road users and an optimized use of the road network …

Learning Sparse Representations For Fruit Fly Gene Expression Pattern Image Annotation And Retreival, Lei Yuan, Alexander Woodard, Shuiwang Ji, Yuan Jiang, Zhi-Hua Zhou, Sudhir Kumar, Jieping Ye

Computer Science Faculty Publications

Background: Fruit fly embryogenesis is one of the best understood animal development systems, and the spatiotemporal gene expression dynamics in this process are captured by digital images. Analysis of these high-throughput images will provide novel insights into the functions, interactions, and networks of animal genes governing development. To facilitate comparative analysis, web-based interfaces have been developed to conduct image retrieval based on body part keywords and images. Currently, the keyword annotation of spatiotemporal gene expression patterns is conducted manually. However, this manual practice does not scale with the continuously expanding collection of images. In addition, existing image retrieval systems based …

Generalized Insertion Region Guides For Delaunay Mesh Refinement, Andrey Chernikov, Nikos Chrisochoides

Computer Science Faculty Publications

Mesh generation by Delaunay refinement is a widely used technique for constructing guaranteed quality triangular and tetrahedral meshes. The quality guarantees are usually provided in terms of the bounds on circumradius-to-shortest-edge ratio and on the grading of the resulting mesh. Traditionally circumcenters of skinny elements and middle points of boundary faces and edges are used for the positions of inserted points. However, recently variations of the traditional algorithms are being proposed that are designed to achieve certain optimization objectives by inserting new points in neighborhoods of the center points. In this paper we propose a general approach to the selection …

On A Versatile Stochastic Growth Model, Samiur Arif, Ismail Khalil, Stephan Olariu

Computer Science Faculty Publications

Growth phenomena are ubiquitous and pervasive not only in biology and the medical sciences, but also in economics, marketing and the computer and social sciences. We introduce a three-parameter version of the classic pure-birth process growth model when suitably instantiated, can be used to model growth phenomena in many seemingly unrelated application domains. We point out that the model is computationally attractive since it admits of conceptually simple, closed form solutions for the time-dependent probabilities.

Momcmc: An Efficient Monte Carlo Method For Multi-Objective Sampling Over Real Parameter Space, Yaohang Li

Computer Science Faculty Publications

In this paper, we present a new population-based Monte Carlo method, so-called MOMCMC (Multi-Objective Markov Chain Monte Carlo). for sampling in the presence of multiple objective functions in real parameter space. The MOMCMC method is designed to address the "multi-objective sampling" problem, which is not only of interest in exploring diversified solutions at the Pareto optimal front in the function space of multiple objective functions, but also those near the front. MOMCMC integrates Differential Evolution (DE) style crossover into Markov Chain Monte Carlo (MCMC) to adaptively propose new solutions from the current population. The significance of dominance is taken into …

Warcreate: Create Wayback-Consumable Warc Files From Any Webpage, Mat Kelly, Michele C. Weigle

Computer Science Faculty Publications

The Internet Archive's Wayback Machine is the most common way that typical users interact with web archives. The Internet Archive uses the Heritrix web crawler to transform pages on the publicly available web into Web ARChive (WARC) files, which can then be accessed using the Wayback Machine. Because Heritrix can only access the publicly available web, many personal pages (e.g. password-protected pages, social media pages) cannot be easily archived into the standard WARC format. We have created a Google Chrome extension, WARCreate, that allows a user to create a WARC file from any webpage. Using this tool, content that might …

Demographic Prediction Of Mobile User From Phone Usage, Shahram Mohrehkesh, Shuiwang Ji, Tamer Nadeem, Michele C. Weigle

Computer Science Faculty Publications

In this paper, we describe how we use the mobile phone usage of users to predict their demographic attributes. Using call log, visited GSM cells information, visited Bluetooth devices, visited Wireless LAN devices, accelerometer data, and so on, we predict the gender, age, marital status, job and number of people in household of users. The accuracy of developed classifiers for these classification problems ranges from 45-87% depending upon the particular classification problem.

Warcreate - Create Wayback-Consumable Warc Files From Any Webpage, Mat Kelly, Michele C. Weigle, Michael L. Nelson

Computer Science Faculty Publications

[First Slide]

What is WARCreate?

• Google Chrome extension
• Creates WARC files
• Enables preservation by users from their browser
• First steps in bringing Institutional Archiving facilities to the PC

How Is M&S Interoperability Different From Other Interoperability Domains?, Andreas Tolk, Saikou Y. Diallo, Jose J. Padilla, Charles D. Turnitsa

Computational Modeling & Simulation Engineering Faculty Publications

During every standard workshop or event, the examples of working interoperability solutions are used to motivate for 'plug and play' standards for M&S as well, like standardized batteries for electronics, or the use of XML to exchange data between heterogeneous systems. While these are successful applications of standards, they are off the mark regarding M&S interoperability. The challenge of M&S is that the product that needs to be made interoperable is not the service or the system alone, but the model behind it as well. The paper shows that the alignment of conceptualizations is the real problem that is not …

Semantic Inference On Heterogeneous E-Marketplace Activities, Jingzhi Guo, Lida Xu, Zhiguo Gong, Chin-Pang Che, Sohail S. Chaudry

Information Technology & Decision Sciences Faculty Publications

An electronic marketplace (e-marketplace) is a common business information space populated with many entities of different system types. Each of them has its own context of how to process activities. This leads to heterogeneous e-marketplace activities, which are difficult to make interoperable and inferred from one entity to another. This study solves this problem by proposing a concept of separation strategy and implementing it through providing a semantic inference engine with a novel inference algorithm. The solution, called the RuleXPM approach, enables one to semantically infer a next e-marketplace activity across multiple contexts/domains. Experiments show that the cross-context/cross-domain semantic inference …

Real-Time Anomaly Detection In Full Motion Video, Glenn Konowicz,, Jiang Li, Donnie Self (Ed.)

Electrical & Computer Engineering Faculty Publications

Improvement in sensor technology such as charge-coupled devices (CCD) as well as constant incremental improvements in storage space has enabled the recording and storage of video more prevalent and lower cost than ever before. However, the improvements in the ability to capture and store a wide array of video have required additional manpower to translate these raw data sources into useful information. We propose an algorithm for automatically detecting anomalous movement patterns within full motion video thus reducing the amount of human intervention required to make use of these new data sources. The proposed algorithm tracks all of the objects …