Physical Sciences and Mathematics Commons^™

Elucidating The Impacts Of Learning Communities On Retention, Student Sense Of Belonging, And Self-Efficacy In Stem, Honour Williams

Master of Science in Chemical Sciences Theses

Student sense of belonging (SoB) and self-efficacy (SE) are necessary aspects of promoting achievement and success in the STEM fields. This study focuses on how learning communities affect students' SoB and SE in relation to STEM as well as demographics, including race, gender, and first-generation status. Students enrolled in either the introductory chemistry lecture or the first-year experience course (students grouped by similar STEM major) were asked to complete a STEM attributes survey (Likert scale) to assess their overall SoB to the university and their chosen major as well as their level of SE in relations to those fields. To …

Investigating The Activity Of Alternative Warheads For Targeted Covalent Inhibition Of The Inhibitor Vertebrate Lysozyme Protein From Pseudomonas Aeruginosa, Katie Hambrick

Master of Science in Chemical Sciences Theses

Pseudomonas aeruginosa (P. aeruginosa) is a Gram-negative bacterium that causes blood and lung infections in hospital environments due to its ability to survive on improperly sterilized medical equipment. P. aeruginosa has developed several multi-drug resistance mechanisms that make it very difficult to treat with current antibiotics.¹ This presents the need for a new class of antibiotics that cannot be overcome by P. aeruginosa’s mechanisms of resistance.

The primary goal of this project was to develop a small library of inhibitors that could later be incorporated into lead compounds for novel antibiotic drug discovery. One of P. …

Azomethine-Containing Moieties For Simple And Degradable Conjugated Polymers, Kimberley Bartlett

Master of Science in Chemical Sciences Theses

Conjugated polymers have been studied for various applications such as electrochromics, organic photovoltaics, organic light-emitting diodes, thin film transistors, biosensors, and energy storage materials. They have received significant attention from many researchers because they are relatively inexpensive and possess a high degree of synthetic tailorability that enables tuning of optical, electrochemical, and physical properties. However, many state-of-the-art polymers require synthetic protocols that use multiple arduous synthetic steps, harmful chemical reagents, and produce toxic byproducts. Additionally, the synthesized polymers are not typically designed to be degradable and will accumulate during waste disposal without end-of-life management strategies. Therefore, there is a need …

Growth Outcomes Of Pseudomonas Aeruginosa Inhibitor Of Vertebrate Lysozyme Knockouts In Conditions Mimicking The Cystic Fibrosis Lung Environment, Amani Gaddy

Master of Science in Chemical Sciences Theses

Pseudomonas aeruginosa (PA) is a Gram-negative bacterium, often found in cystic fibrosis (CF) patients and can lead to the decline of lung functioning and premature death in 80% of infected patients when microcolonies form within the mucin of the lung. Due to its major capacity for antibiotic resistance, an alternative strategy towards defending against the bacterial invasion of PA is by the antibacterial activity of our own innate immune system with use of elements such as lysozyme. Pseudomonas aeruginosa inhibitor of vertebrate lysozyme class 1 (Ivyp1) is a periplasmic protein produced by gram-negative bacteria that inhibits the enzymatic activity of …

The Identification And Quantification Of Organophosphate Flame Retardants In Raw Materials Utilized In Polyurethane Production, Lindsay Tudor

Master of Science in Chemical Sciences Theses

Flame retardant additives are utilized in various polyurethane applications to comply with industry and flammability standards. Federal regulations and restrictive standards continue to tighten controls on certain impurities found in flame retardant blends. These restrictions include the limitation of organophosphates. Extensive research has been conducted to examine the effects of organophosphates in humans. To date, researchers have predominantly focused on the final product, mainly furniture and bedding products, rather than the raw materials utilized in production. Industrial chemists continue to grapple with the development of an effective method for detecting and quantifying organophosphate compounds in various flame retardant mixtures as …

Analyzing The Interactions Of Thermoresponsive Coacervate-Forming Biodegradable Polyester Encapsulation On Model Protein Structure And Activity, Conner Casterline

Master of Science in Chemical Sciences Theses

Protein therapeutics hold high efficacy in treatment for various diseases including cancer and diabetes. However, the treatment cost is generally higher than other therapeutics mainly due to in vivo protein degradation. This drawback creates demand for more efficient delivery methods to preserve the function and integrity of protein therapeutics. Thermoresponsive coacervate-forming biodegradable polyesters (TR-PEs) are a thermoresponsive molecular packaging system used in protein therapeutic research. The term coacervate refers to a phase-separated solution in which a dense polymer phase separates from the aqueous phase to form nanodroplets within solution, capturing bioactive molecules. Limited research demonstrates if TR-PEs can encapsulate and …

Determining The Structure And Activity Of A Pseudomonas Aeruginosa Protein, Ivyp2, Katherine Letsinger

Master of Science in Chemical Sciences Theses

Various biophysical methods were employed to structurally characterize and assess the activity of an important resistance factor (Ivyp2) from the multi-drug resistant Gram-negative bacterium Pseudomonas aeruginosa. This opportunistic pathogen accounts for approximately 10% of all hospital-acquired infections in the United States and contains a number of virulence factors that aid in its ability to infect and colonize immunocompromised individuals and those with cystic fibrosis. One of these factors – inhibitor of vertebrate lysozyme, or Ivy – neutralizes the lytic activity of lysozyme, an antimicrobial enzyme part of the innate immune system that hydrolyzes the linkages between bacterial cell wall subunits. …

Probing Convergence In Orthogonal Conjugated Catalysis By T4 Lysozyme Utilizing Biophysical Characterization, William Turner

Master of Science in Chemical Sciences Theses

Conjugated polymers have become highly attractive as they afford unique material properties that make them promising for a wide range of applications, such as photovoltaics and drug delivery systems. However, these conjugated polymers require extensive synthetic steps involving hazardous organic solvents or metal-based catalysts yielding toxic waste streams. To remedy this, enzymes have emerged as a highly valuable alternative to synthesizing these polymers as they are able to be produced in environmentally benign conditions and have played a pivotal role in various biosynthetic strategies in recent years. Serving as model systems, lysozymes have been shown to polymerize 2-ethynylpyridine (2-EP) via …

Synthesis, Characterization, And Thermal Investigation Of Metal Phosphites And Potential Implications For Astrobiology, Kimberly Faye Meyberg

Master of Science in Chemical Sciences Theses

The role of phosphorus in biochemistry is well understood. However, the route by which phosphorus was incorporated into early biomolecules on the prebiotic Earth is uncertain. Phosphate, the most prevalent species of phosphorus found in Earth’s geological record, is insoluble and unreactive with organics in aqueous environments. While the most abundant biogenic elements (C, N, H, O, and S) can be found in a volatile phase under terrestrial conditions, phosphorus cannot, suggesting that minerals must have been the main sources of phosphorus on the early Earth. One possible explanation is that phosphite was a major source of reduced, reactive phosphorus …

Simplified Synthesis Of Conjugated Polymers Enabled Via 1,4-Dihydropyrrolo[3,2-B]Pyrrole, Kenneth-John Jack Bell

Master of Science in Chemical Sciences Theses

Conjugated polymers have attracted significant attention as the active layer material in organic electronics, such as organic photovoltaics and light-emitting diodes, partly due to the ability to influence a broad range of properties through structural design motifs. However, high performance conjugated polymers suffer from numerous synthetic steps, generation of toxic waste, and harsh reaction conditions all of which impart additional costs that inhibit their widespread utilization. Therefore, an emphasis on reducing synthetic complexity and utilizing abundant, commercially available starting materials is needed for organic electronics to reach their full potential. Dihydropyrrolo[3,2-b]pyrrole (H₂DPP) chromophores offer a simple one-pot synthesis …

Method Development Of Standard Dilution Analysis On Molecules And Dissolution Studies Of Ibuprofen Tablets Along With Common Beverage Constituents, Scott Richardson

Master of Science in Chemical Sciences Theses

The United States Pharmacopeia sets the standards for the manufacturing, storage, and analysis of medicinal formulations. One analysis, dissolution testing evaluates the rate at which the medicinal formulation forms a solution to predict in vivo drug release. Dissolution testing on ibuprofen tablets alone and in the presence of ascorbic acid or caffeine was performed to mimic the administration using orange juice or caffeinated soft drinks to assess their impact on the dissolution rate of ibuprofen. Results using the external calibration method produced a dissolution rate of ibuprofen that decreased 4% in the presence of ascorbic acid and increased 1% in …

Desorption Of Non-Exchangeable Radiocesium In Soil From Fukushima Prefecture, Japan, Grayson Phillips

Master of Science in Chemical Sciences Theses

The Fukushima Daiichi Nuclear Powerplant was struck by an earthquake and a tsunami resulting in the meltdown of four of the six reactor cores operating at the plant. As a result, nuclear waste was released from the plant, contaminating the soil in the region. Most of the contamination was sequestered within the few inches of the soil but unluckily the contamination, radiocesium formed a non-exchangeable bond. The Japanese government bagged this soil and has stored it in fields surrounding the exclusion zone. Long-term storage facilities have not been determined. This is a study of the available resources to determine if, …

Binding Affinity Of Flavins To The Dehydrogenase Domain Of Spnox, Quinesha Williams

Master of Science in Chemical Sciences Theses

NADPH oxidases (NOX’s) are enzymes that catalyze the production of superoxide through single electron transfer. This superoxide production leads to the production of other reactive oxygen species (ROS). ROS affect many metabolic processes throughout the body that can cause several different diseases, making this an ideal target for drug discovery. The general structure of NOX contains a transmembrane (TM) domain and a dehydrogenase (DH) domain connected by a linker. The DH domain contains binding sites for FAD and NADPH/NADH that both participate in the electron transfer necessary for producing superoxide. Structural information of NOX’s is still relatively new to the …

Explorations Of Thermus Thermophilus Hb8 Transcription Factors Ttha1437 And Ttha1719 Using The Combinatorial Selection Method Repsa, Sarah Claire Sneed

Master of Science in Chemical Sciences Theses

In all organisms, genes exist that encode for regulatory proteins, called transcription factors (TFs) that can activate or repress transcription of specific genes depending on their biological function. Thermus thermophilus HB8 is speculated to contain 2,245 genes, of which 70 are postulated to be transcription factors. However, but for very few, little is known regarding the genes they regulate and their biological functions. The novel combinatorial method Restriction Endonuclease Protection, Selection, and Amplification (REPSA) has been successful for identifying and validating consensus binding sequences in T. thermophilus HB8 with previously studied TFs. Here REPSA was explored as a technique and …

Designing A Reactive Warhead To Bind And Inhibit Pseudomonas Aeruginosa’S Periplasmic Protein, Inhibitor Of Vertebrate Lysozyme, Leah Greinke

Master of Science in Chemical Sciences Theses

Pseudomonas aeruginosa is a Gram-negative bacterium commonly found throughout the environment. It is a significant cause of disease and mortality in immunodeficient patients such as those suffering from cystic fibrosis (CF). Due to the emerging antibiotic resistance of P. aeruginosa, it is becoming increasingly more challenging to treat an infection by traditional means. Further complicating treatment, P. aeruginosa secretes a protein known as Inhibitor of Vertebrate Lysozyme (PaIVY) that binds to and inhibits C-type lysozyme, thus preventing the degradation of the bacterium. A reactive chemical warhead was synthesized from a rhenium(I) tricarbonyl derivative inorder to bind to and irreversibly …

Synthesis Of The Natural Alkaloids Angustureine, Cuspareine, Galipeine, Galipinine Using Α-Aminocycloalkyl Copper Reagents, Zane Bertoli

Master of Science in Chemical Sciences Theses

Tetrahydroquinolines (THQs) are a group of N-heterocyclic molecules derived from natural sources. They show a wide range of interesting biological activity and have been the basis for a variety of different medications including antibacterial and antiparasitic drugs. The Hancock alkaloids, Galipinine, Galipeine, Cuspareine and Angustureine, are natural 1,2,3,4- tetrahydroquinoline compounds that are found in the South American Angostura tree. Extracts containing these alkaloids have been used to treat fever, dysentery and other ailments. Interestingly, These compounds have shows in vitro antimalarial activity. However, it does not appear in the literature that they have been evaluated for their potential antibiotic activity. …

Discovery Of A Dna-Binding Consensus And Potential Genomic Regulatory Binding Sites For The Thermus Thermophilus Hb8 Transcriptional Regulator Ttha1359, Josiah Teague

Master of Science in Chemical Sciences Theses

Transcription factor (TF) proteins act as molecular mechanisms that modulate the initiation of the first step in the expression of genes, gene transcription. Currently, knowledge of the DNA-binding specificities and genes regulated by many TFs, including those of well-studied model organisms such as Escherichia coli and Thermus thermophilus, remains incomplete or lacking which renders gaps in the understanding of the regulatory networks and systems biology of many organisms. Cyclic-AMP receptor protein (CRP) regulators and fumarate and nitrate reduction regulator (FNR) proteins compose the CRP/FNR superfamily of TFs, a diverse subgroup of TFs in bacteria which regulate various gene expression programs. …

Mineral-Surface Chemistry Of Hydroxyapatite And Urea-Rich Solutions, Estefania Garcia

Master of Science in Chemical Sciences Theses

On this planet the development of life requires six essential elements: C, H, O, N, P, and S. These elements are present in gaseous form, with the exception of phosphorus, which is primarily found in solid mineral sources. Phosphorus in biological systems is significant through its involvement in metabolic functions (e.g., Coenzyme A), cell structure (i.e., phospholipid membranes), and genetic storage/transfer (i.e., phosphodiester bonds in DNA and RNA). However, an ambiguity remains with the assimilation of phosphorus in biological systems, caused by its habitual presence in insoluble phosphate mineral sources. Recent research has found that insoluble phosphate …

Small Angle X-Ray Scattering Study Of Conformational Changes In Steroid Responsive Activator (Sra) Rna Upon Binding With Suppressor Protein Sharp, Diane Diatta

Master of Science in Chemical Sciences Theses

ABSTRACT

Differentiation and proliferation are known to be influenced by steroid stimulation. The steroid receptor activator (SRA) RNA is a large RNA transcript indicated to be an epigenetic regulatory component in the steroid receptor coactivator-1 (SRC-1) acetyltransferase complex. It is needed for a response to steroid hormones by tumor cells. However, this activity is hindered by suppressive RNA binding proteins like the SMRT/HDAC1-associated repressor protein (SHARP), which binds the STR7 domain of SRA RNA through its four RNA recognition motifs (RRMs); it is not fully understood how SHARP executes this role as there are no SRA RNA-SHARP structures available for …

Use Of Pope Engagement Index To Measure Cognitive Load Of Physical Modeling Activities In Organic Chemistry, Jenifer Calvert

Master of Science in Chemical Sciences Theses

Understanding how students learn and process information is critical to developing physical modeling activities that facilitate student learning by decreasing cognitive load in the working memory. Optimizing cognitive load during physical modeling activities in organic chemistry is the key to effective and efficient learning. Using EEG (electroencephalogram) and eye tracking technologies, researchers measured and recorded the cognitive processing of participants while they completed a chiral physical modeling activity. Analysis of the data using the Engagement Index developed by Pope et al provided information necessary to develop curriculum that does not undermine student learning due to excessive cognitive load.

A More Efficient Method For Extracting And Analyzing Pesticides In Baby Foods, Oluwatobi Fabunmi

Master of Science in Chemical Sciences Theses

Pesticides that are used to control pests such as insects, rodents, bacteria, mold, and fungus in food production end up in the fruits and vegetables that we consume. Clearly, concentration levels of pesticides must be carefully monitored. Successful monitoring of the concentrations is critically dependent upon pesticide extraction efficiency, the pesticide structure and the matrix (food product) in which the pesticide is found. Variables such as polarity, solubility, and pH must be investigated. A common approach to develop analysis methods involves spiking food products with pesticides and evaluating method efficiency by calculating percent recoveries from the foods. Sample results from …

Design Of Cotton Fabric-Based Binary And Ternary Composite Materials Containing Nanostructured Zno, Tio2, And Plasmonic Nanoparticles: Photocatalytic Applications, Latanya Downer

Master of Science in Chemical Sciences Theses

Nanostructure metals and metal oxides can be used for surface functionalization and combined with different materials to increase functionality. Recently, surface functionality has been of interest due to its multi-component and its ability to generate new material properties. One of its main application is the creation of nanomaterials because of its novel physical properties which contribute towards stabilization, strength, and catalytic properties. Nanomaterials makes it possible to fabricate objects in the nanoscale size range which offers beneficial physical properties. The nanomaterial distinctiveness allows for the creation of materials with unique characteristics for different applications such as photocatalytic coatings. Semiconductor and …

Cerberus-Type Trisanionic Trisnhc And Its Zwitterionic Gold And Silver Complexes, Maleek Montgomery, Daniela Tapu

Master of Science in Chemical Sciences Theses

While early efforts have been made to explore the chemistry of neutral multitopic nonchelating N-heterocyclic carbenes (NHCs), limited progress has been made in the development of their anionic counterparts. This thesis describes the synthesis and characterization of a novel trianionic NHC. The corresponding thione was generated through an NMR experiment of the free carbenes with an excess of sulfur. The utility of this novel triscarbene as a ligand in organometallic chemistry has been proven by the construction of homotrimetallic systems. The resulting zwitterionic metal complexes of type [(MPPh)₃(NHC)] (M = Au or Ag) have been fully characterized by …

Use Of Biometrics To Determine Biochemistry Knowledge Level Differences In Reading And Processing Metabolic Pathways, Kim Kammerdiener

Master of Science in Chemical Sciences Theses

The areas of chemistry and biochemistry commonly use external representations to enhance learning for students. The use of schematics and representations for illustrating metabolic pathways is a familiar image in most biochemistry textbooks. These external representations can be the key to student understanding. To date, there has not been any previous research specifically focused on the areas of interest that are predominant for an individual viewing a metabolic pathway commonly found in a biochemistry textbook. Therefore, this thesis study set out to 1) investigate what individuals look at in a metabolic pathway based on their level of expertise in metabolism …

Fast Identification Of Components Commonly Used In Homemade Explosives By Spectroscopic And Chemometric Methods, Deidre Day Vandenbos, Huggins Msimanga, Christopher Dockery

Master of Science in Chemical Sciences Theses

Homemade explosives (HMEs) have become a global pandemic. This forensic research focuses on developing identification methods that can provide quick, cost effective, non-destructive analysis using portable instrumentation. These capabilities would be invaluable to first responders, military, and security officials to establish an evidentiary link between a suspect and a reference in cases of HMEs, IEDs, arson and environmental contamination.

Modern methods for quick identification of the fuels and oxidant sources used in manufacturing HMEs, include Fourier Transform Infrared (FT-IR) and Raman spectroscopy. Visual confirmation alone, however, is not strong enough to discriminate chemicals with nearly identical spectra, which occurs when …

The Study Of Zirconium Hydroxide And Zirconium (Iv) Metal-Organic Frameworks As Reactive Substrates For The Decomposition Of Chemical Warfare Agents, James W. Kollar

Master of Science in Chemical Sciences Theses

Nerve agents have been described by the Center for Disease Control and Prevention to be the most toxic and rapidly acting of chemical warfare agents. The present study investigates the efficacy of zirconium hydroxide, Zr(OH)₄, and Zr(IV) Metal-Organic Frameworks (MOFs) in the uptake and decomposition of the gas phase nerve agent simulant dimethyl methylphosphonate, DMMP. This investigation was carried out using two different methods: 1) with the use of Diffuse Reflectance Infrared Fourier Transform Spectroscopy (DRIFTS) to examine the surface reaction between DMMP and the solid; and 2) using a flow reactor system that monitored gas phase reaction …

Synthesis Of Α, Β-Substituted Alkenylphosphonates From Α-Phosphonovinyl Triflates: I) Palladium Catalyzed Suzuki-Miyaura Cross-Coupling With Aryl Boronic Acids Ii) Palladium Catalyzed Reduction, Ronald Laryea Mensah

Master of Science in Chemical Sciences Theses

Alkenylphosphonates (vinylphosphonates) are important targets for R & D because they have interesting chemical, biological and pharmacological properties. Vinylphosphonates are used in synthesis, polymer applications, and have demonstrated potential as anticancer and antimicrobial agents.

Vinyl triflates are useful in organic synthesis and are referred to as pseudo-halides because they react in a manner similar to halides. Vinyl triflates have a broad range of synthetic utility because they undergo nucleophilic substitutions and transition metal-mediated reactions. There is a growing interest in using α-phosphonovinyl pseudo-halides in transition metal-mediated cross-coupling reactions as a means to synthesize α, β-substituted alkenylphosphonates. Over the past three …

The Direct Dissociation Of Methanol On V(100) Surfaces, John Allred

Master of Science in Chemical Sciences Theses

The study of dissociating methanol on vanadium surfaces was investigated in order to provide insight into reaction pathways for methane dissociation and partial oxidation into other feedstock chemicals. The construction of a custom-designed ultrahigh vacuum chamber was done to permit surface analysis to a greater extent than was previously available in the lab. Prior to experimentation, the clean vanadium surface was characterized through use of X-ray photoelectron spectroscopy, scanning electron microscopy, and energy dispersive X-ray spectroscopy. This surface characterization revealed significant oxidation of the vanadium surface from atmospheric oxygen, water and carbon dioxide. The direct dissociation and partial oxidation of …

Design Of 3d Macroporous Inverse Opal Tio2 Binary And Ternary Composites Sensitized With Gold Nanoparticles And Cds Quantum Dots For Photocatalysis, Daniel A. Corella

Master of Science in Chemical Sciences Theses

Materials composed of titanium (IV) oxide (TiO₂) have received enormous scientific interest due to titania’s abundance, non-toxicity, and photocatalytic proficiency, however its large band gap limits its applicability under ambient conditions. Various attempts have been made to incorporate titania into composite systems to sensitize it for activity under a broader range of wavelengths. One such method includes utilizing narrow band gap semiconductors to form an electron transfer process analogous to photosynthesis referred to as a Z-scheme. Z-scheme systems can catalyze the decomposition of aqueous pollutants via generation of reactive oxygen species after input of sunlight. This work reports …

Hydrogen Peroxide Inhibition And Inactivation Of Bicupin Oxalate Oxidase, John M. Goodwin Vii

Master of Science in Chemical Sciences Theses

Oxalate oxidase is a manganese containing enzyme that catalyzes the oxygen dependent oxidation of oxalate to carbon dioxide and hydrogen peroxide. Oxalate oxidase from Ceriporiopsis subvermispora (CsOxOx) is the first characterized bicupin oxalate oxidase. Potential applications of oxalate oxidase in cancer treatment, paper pulping, and biofuel cells highlight the need to study the effects of hydrogen peroxide on the CsOxOx catalyzed oxidation of oxalate. Membrane inlet mass spectrometry (MIMS) was used to directly measure initial rates of carbon dioxide formation and oxygen consumption in varying initial concentrations of hydrogen peroxide. This work demonstrates that hydrogen peroxide is both a reversible …