Physical Sciences and Mathematics Commons^™

Photoaffinity Labeling Of The Antimycin Binding Site In Rhodopseudomonas Sphaeroides, Emily Wilson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of this study was to identify the site of interaction of antimycin with the ubiquinone-cytochrome b-c1 oxidoreductase in the photosynthetic bacteria, Rhodopseudomonas sphaeroides. To accomplish this goal, three areas of research were undertaken: the synthesis of a radiolabeled, photoaffinity analog of antimycin, identification of the inhibitory characteristics of this analog, and the photoaffinity labeling of the antimycin binding site. All three areas were accomplished.

The major finding of this study was the identification of an 11,000 dalton polypeptide as the predominantly labeled protein. Although this polypeptide was not exclusively labeled, it was consistently labeled and showed competition …

Studies Of Dispersion Energy In Hydrogen‐Bonded Systems. H2o–Hoh, H2o–Hf, H3n–Hf, Hf–Hf, M. M. Szczesniak, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Dispersion energy is calculated in the systems H₂O–HOH, H₂O–HF, H₃N–HF, and HF–HF as a function of the intermolecular separation using a variety of methods. M≂ller–Plesset perturbation theory to second and third orders is applied in conjunction with polarized basis sets of 6‐311G∗∗ type and with an extended basis set including a second set of polarization functions (DZ+2P). These results are compared to a multipole expansion of the dispersion energy, based on the Unsöld approximation, carried out to the inverse tenth power of the intermolecular distance. Pairwise evaluation is also carried out using both atom–atom …

Proton Transfers Between First‐ And Second‐Row Atoms: (H2ohsh2)+ And (H3nhsh2)+, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Ab initio molecular orbital methods are used to study the transfer of the central proton along the hydrogen bonds in (H₂OHSH₂)⁺ and (H₃NHSH₂)⁺. Proton transfer potentials are generated using the 4‐31G∗ basis set at the Hartree–Fock level for various values for the hydrogen bond length R(XS). Full geometry optimizations are carried out at each stage of proton transfer. The barrier to proton transfer increases as the hydrogen bond is lengthened. For a given bond length, the highest barriers are observed for transfer from …

Ab Initio Comparison Of H Bonds And Li Bonds. Complexes Of Lif, Licl, Hf, And Hcl With Nh3, Z. Latajka, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Ab initio calculations are carried out on the complexes H₃N–LiF, H₃N–LiCl and their analogs H₃N–HF and H₃N–HCl as well as the isolated subunits. Double‐zeta basis sets, augmented by two sets of polarization functions, are used in conjunction with second‐order Moller–Plesset perturbation theory (MP2) for evaluation of electron correlation effects. The Li bonds are found to be substantially stronger than their H‐bonding counterparts, due in large measure to the greater dipole moments of the LiX subunits. Correlation has a large effect on the geometry and energetics of …

Theoretical Study Of H2o–Hf And H2o–Hcl: Comparison With Experiment, M. M. Szczesniak, Steve Scheiner, Y. Bouteiller

Chemistry and Biochemistry Faculty Publications

The H bonds in H₂O–HF and H₂O–HCl are studied and compared using ab initio molecular orbital methods and the results compared to experimental data. Basis sets used are: (i) triple valence 6‐311G∗∗ and (ii) double ζ with two sets of polarization functions. Electron correlation, included via second‐ and third‐order Møller–Plesset perturbation theory, is found to have profound effects on both systems, particularly H₂O–HCl. Both H bonds are strengthened substantially with a concomitant reduction in length. H‐bond energies and geometries calculated at correlated levels are in excellent accord with …

Ab Initio Study Of Fh–Ph3 And Clh–Ph3 Including The Effects Of Electron Correlation, Z. Latajka, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Ab initio calculations are carried out for FH–PH₃ and ClH–PH₃ using a basis set including two sets of polarization functions. Electron correlation is incorporated via Møller–Plesset perturbation theory to second and (in part) to third orders. The basis set is tested and found to produce satisfactory treatments of subsystem properties including geometries and dipole moments as well as the proton affinity and inversion barrier of PH₃. Electron correlation is observed to markedly enhance the interaction between PH₃ and the hydrogen halides. Its contribution to the complexation energy is 30% …

Effects Of Basis Set And Electron Correlation On The Calculated Properties Of The Ammonia Dimer, Z. Latajka, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Ab initio calculations are carried out for (NH₃)₂ with a 6‐31G∗∗(1p,2d) basis set containing diffuse polarization functions. Electron correlation is included via second‐order Møller–Plesset perturbation theory (MP2). At the SCF level, the equilibrium R(NN) distance is 3.54 Å and the interaction energy is −2.35 kcal/mol. Inclusion of correlation enhances the attraction substantially, increasing the energy to −4.05 kcal/mol and reducing the intermolecular separation by 0.20 Å. Comparison with previous results at the SCF level demonstrates a variety of errors including exaggerated dipole moments, underestimation of polarization …