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Full-Text Articles in Physical Sciences and Mathematics
Determining Protease Substrate Selectivity And Inhibition By Label-Free Supramolecular Tandem Enzyme Assays, Garima Ghale, Vijayakumar Ramalingam, Adam R. Urbach, Werner M. Nau
Determining Protease Substrate Selectivity And Inhibition By Label-Free Supramolecular Tandem Enzyme Assays, Garima Ghale, Vijayakumar Ramalingam, Adam R. Urbach, Werner M. Nau
Adam R Urbach
An analytical method has been developed for the continuous monitoring of protease activity on unlabeled peptides in real time by fluorescence spectroscopy. The assay is enabled by a reporter pair comprising the macrocycle cucurbit[7]uril (CB7) and the fluorescent dye acridine orange (AO). CB7 functions by selectively recognizing N-terminal phenylalanine residues as they are produced during the enzymatic cleavage of enkephalin-type peptides by the metalloendopeptidase thermolysin. The substrate peptides (e.g., Thr-Gly-Ala-Phe-Met-NH2) bind to CB7 with moderately high affinity (K ≈ 104 M–1), while their cleavage products (e.g., Phe-Met-NH2) bind very tightly (K …
Molecular Recognition Of Insulin By A Synthetic Receptor, Jordan Chinai, Alexander Taylor, Lisa Ryno, Nicholas Hargreaves, Christopher Morris, P Hart, Adam Urbach
Molecular Recognition Of Insulin By A Synthetic Receptor, Jordan Chinai, Alexander Taylor, Lisa Ryno, Nicholas Hargreaves, Christopher Morris, P Hart, Adam Urbach
Adam R Urbach
The discovery of molecules that bind tightly and selectively to desired proteins continues to drive innovation at the interface of chemistry and biology. This paper describes the binding of human insulin by the synthetic receptor cucurbit[7]uril (Q7) in vitro. Isothermal titration calorimetry and fluorescence spectroscopy experiments show that Q7 binds to insulin with an equilibrium association constant of 1.5 × 106 M−1 and with 50−100-fold selectivity versus proteins that are much larger but lack an N-terminal aromatic residue, and with >1000-fold selectivity versus an insulin variant lacking the N-terminal phenylalanine (Phe) residue. The crystal structure of the Q7·insulin complex shows …
Sequence-Specific Inhibition Of A Nonspecific Protease, Leigh Logsdon, Adam Urbach
Sequence-Specific Inhibition Of A Nonspecific Protease, Leigh Logsdon, Adam Urbach
Adam R Urbach
A nonspecific exopeptidase, aminopeptidase N (APN), is inhibited sequence-specifically by a synthetic host, cucurbit[7]uril (Q7), which binds with high affinity and specificity to N-terminal phenylalanine (Phe) and 4-(aminomethyl)phenylalanine (AMPhe) and prevents their removal from the peptide. Liquid chromatography experiments demonstrated that in the presence of excess Q7, APN quantitatively converts the pentapeptides Thr-Gly-Ala-X-Met into the dipeptides X-Met (X = Phe, AMPhe). The resulting Q7-bound products are completely stable to proteolytic digestion for at least 24 h. Structure–activity studies revealed a direct correlation between the extent of protection of an N-terminal amino acid and its affinity for Q7. Therefore, Q7 provides …
Effects Of The Number And Placement Of Positive Charges On Viologen–Cucurbit[N]Uril Interactions, Gretchen Vincil, Adam Urbach
Effects Of The Number And Placement Of Positive Charges On Viologen–Cucurbit[N]Uril Interactions, Gretchen Vincil, Adam Urbach
Adam R Urbach
Recent developments in the synthesis and applications of the cucurbit[n]uril family of synthetic hosts has led to an increasing interest in the detailed studies of their interactions with a wide variety of guests. This paper describes a quantitative study of the effects of the number and placement of positive charges on the binding of viologen guests to cucurbit[7]uril and cucurbit[8]uril. A series of viologen derivatives with one to four charges was characterised by isothermal titration calorimetry, 1H NMR spectroscopy and mass spectrometry to determine the stoichiometry, affinity and mode of binding. These data show that stoichiometry can be controlled by …